source: sasmodels/sasmodels/models/broad_peak.py @ eb97b11

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Last change on this file since eb97b11 was 65279d8, checked in by Paul Kienzle <pkienzle@…>, 8 years ago

vectorize poly_gauss_coil

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[636adb6]1r"""
2This model calculates an empirical functional form for SAS data characterized
3by a broad scattering peak. Many SAS spectra are characterized by a broad peak
4even though they are from amorphous soft materials. For example, soft systems
5that show a SAS peak include copolymers, polyelectrolytes, multiphase systems,
6layered structures, etc.
7
[3c56da87]8The d-spacing corresponding to the broad peak is a characteristic distance
9between the scattering inhomogeneities (such as in lamellar, cylindrical, or
[636adb6]10spherical morphologies, or for bicontinuous structures).
11
12Definition
13----------
14
[eb69cce]15The scattering intensity $I(q)$ is calculated as
[636adb6]16
[eb69cce]17.. math::
[f57d123]18
[aad336c]19    I(q) = \frac{A}{q^n} + \frac{C}{1 + (|q - q_0|\xi)^m} + B
[636adb6]20
[eb69cce]21Here the peak position is related to the d-spacing as $q_o = 2\pi / d_o$.
[636adb6]22
[aad336c]23$A$ is the Porod law scale factor, $n$ the Porod exponent, $C$ is the Lorentzian
24scale factor, $m$ the exponent of q, \ |xi|\  the screening length, and $B$ the flat background.
25
[eb69cce]26For 2D data the scattering intensity is calculated in the same way as 1D,
27where the $q$ vector is defined as
[636adb6]28
[eb69cce]29.. math::
[f57d123]30
31    q = \sqrt{q_x^2 + q_y^2}
[636adb6]32
33
[eb69cce]34References
35----------
[636adb6]36
37None.
38
39*2013/09/09 - Description reviewed by King, S and Parker, P.*
40
41"""
42
[3c56da87]43from numpy import inf, sqrt
[636adb6]44
45name = "broad_peak"
46title = "Broad Lorentzian type peak on top of a power law decay"
47description = """\
48      I(q) = scale_p/pow(q,exponent)+scale_l/
49      (1.0 + pow((fabs(q-q_peak)*length_l),exponent_l) )+ background
50
51      List of default parameters:
52      porod_scale = Porod term scaling
53      porod_exp = Porod exponent
54      lorentz_scale = Lorentzian term scaling
55      lorentz_length = Lorentzian screening length [A]
56      peak_pos = peak location [1/A]
57      lorentz_exp = Lorentzian exponent
58      background = Incoherent background"""
[485aee2]59category = "shape-independent"
[636adb6]60
[dcdf29d]61# pylint: disable=bad-whitespace, line-too-long
[485aee2]62#             ["name", "units", default, [lower, upper], "type", "description"],
[dcdf29d]63parameters = [["porod_scale",    "",  1.0e-05, [-inf, inf], "", "Power law scale factor"],
64              ["porod_exp",      "",      3.0, [-inf, inf], "", "Exponent of power law"],
65              ["lorentz_scale",  "",     10.0, [-inf, inf], "", "Scale factor for broad Lorentzian peak"],
66              ["lorentz_length", "Ang",  50.0, [-inf, inf], "", "Lorentzian screening length"],
67              ["peak_pos",       "1/Ang", 0.1, [-inf, inf], "", "Peak position in q"],
68              ["lorentz_exp",    "",      2.0, [-inf, inf], "", "Exponent of Lorentz function"],
[485aee2]69             ]
[dcdf29d]70# pylint: enable=bad-whitespace, line-too-long
71
72def Iq(q,
73       porod_scale=1.0e-5,
74       porod_exp=3.0,
75       lorentz_scale=10.0,
76       lorentz_length=50.0,
77       peak_pos=0.1,
78       lorentz_exp=2.0):
79    """
80    :param q:              Input q-value
81    :param porod_scale:    Power law scale factor
82    :param porod_exp:      Exponent of power law
83    :param lorentz_scale:  Scale factor for broad Lorentzian peak
84    :param lorentz_length: Lorentzian screening length
85    :param peak_pos:       Peak position in q
86    :param lorentz_exp:    Exponent of Lorentz function
87    :return:               Calculated intensity
88    """
[636adb6]89
[485aee2]90    inten = (porod_scale / q ** porod_exp + lorentz_scale
91             / (1.0 + (abs(q - peak_pos) * lorentz_length) ** lorentz_exp))
[3c56da87]92    return inten
[eb69cce]93Iq.vectorized = True  # Iq accepts an array of q values
[636adb6]94
[f734e7d]95def Iqxy(qx, qy, *args):
[dcdf29d]96    """
97    :param qx:   Input q_x-value
98    :param qy:   Input q_y-value
99    :param args: Remaining arguments
100    :return:     2D-Intensity
101    """
[485aee2]102    return Iq(sqrt(qx ** 2 + qy ** 2), *args)
[dcdf29d]103Iqxy.vectorized = True # Iqxy accepts an array of qx, qy values
[636adb6]104
[485aee2]105demo = dict(scale=1, background=0,
106            porod_scale=1.0e-05, porod_exp=3,
107            lorentz_scale=10, lorentz_length=50, peak_pos=0.1, lorentz_exp=2)
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