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398 | <div class="file-info"> |
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399 | 157 lines (141 sloc) |
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400 | <span class="file-info-divider"></span> |
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401 | 5.04 KB |
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402 | </div> |
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403 | </div> |
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404 | |
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405 | |
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406 | |
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407 | <div class="blob-wrapper data type-python"> |
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408 | <table class="highlight tab-size js-file-line-container" data-tab-size="8"> |
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409 | <tr> |
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410 | <td id="L1" class="blob-num js-line-number" data-line-number="1"></td> |
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411 | <td id="LC1" class="blob-code blob-code-inner js-file-line"><span class="pl-s"><span class="pl-pds">"""</span></span></td> |
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412 | </tr> |
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413 | <tr> |
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414 | <td id="L2" class="blob-num js-line-number" data-line-number="2"></td> |
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415 | <td id="LC2" class="blob-code blob-code-inner js-file-line"><span class="pl-s">Convert models to and from sasview.</span></td> |
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416 | </tr> |
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417 | <tr> |
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418 | <td id="L3" class="blob-num js-line-number" data-line-number="3"></td> |
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419 | <td id="LC3" class="blob-code blob-code-inner js-file-line"><span class="pl-s"><span class="pl-pds">"""</span></span></td> |
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420 | </tr> |
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421 | <tr> |
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422 | <td id="L4" class="blob-num js-line-number" data-line-number="4"></td> |
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423 | <td id="LC4" class="blob-code blob-code-inner js-file-line"><span class="pl-k">import</span> warnings</td> |
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424 | </tr> |
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425 | <tr> |
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426 | <td id="L5" class="blob-num js-line-number" data-line-number="5"></td> |
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427 | <td id="LC5" class="blob-code blob-code-inner js-file-line"> |
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428 | </td> |
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429 | </tr> |
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430 | <tr> |
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431 | <td id="L6" class="blob-num js-line-number" data-line-number="6"></td> |
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432 | <td id="LC6" class="blob-code blob-code-inner js-file-line"><span class="pl-c"># List of models which SasView versions don't contain the explicit 'scale' argument.</span></td> |
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433 | </tr> |
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434 | <tr> |
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435 | <td id="L7" class="blob-num js-line-number" data-line-number="7"></td> |
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436 | <td id="LC7" class="blob-code blob-code-inner js-file-line"><span class="pl-c"># When converting such a model, please update this list.</span></td> |
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437 | </tr> |
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438 | <tr> |
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439 | <td id="L8" class="blob-num js-line-number" data-line-number="8"></td> |
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440 | <td id="LC8" class="blob-code blob-code-inner js-file-line"><span class="pl-c1">MODELS_WITHOUT_SCALE</span> <span class="pl-k">=</span> [</td> |
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441 | </tr> |
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442 | <tr> |
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443 | <td id="L9" class="blob-num js-line-number" data-line-number="9"></td> |
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444 | <td id="LC9" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">'</span>teubner_strey<span class="pl-pds">'</span></span>,</td> |
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445 | </tr> |
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446 | <tr> |
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447 | <td id="L10" class="blob-num js-line-number" data-line-number="10"></td> |
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448 | <td id="LC10" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">'</span>broad_peak<span class="pl-pds">'</span></span>,</td> |
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449 | </tr> |
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450 | <tr> |
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451 | <td id="L11" class="blob-num js-line-number" data-line-number="11"></td> |
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452 | <td id="LC11" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">'</span>two_lorentzian<span class="pl-pds">'</span></span>,</td> |
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453 | </tr> |
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454 | <tr> |
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455 | <td id="L12" class="blob-num js-line-number" data-line-number="12"></td> |
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456 | <td id="LC12" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">'</span>gel_fit<span class="pl-pds">'</span></span>,</td> |
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457 | </tr> |
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458 | <tr> |
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459 | <td id="L13" class="blob-num js-line-number" data-line-number="13"></td> |
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460 | <td id="LC13" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">'</span>gauss_lorentz_gel<span class="pl-pds">'</span></span>,</td> |
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461 | </tr> |
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462 | <tr> |
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463 | <td id="L14" class="blob-num js-line-number" data-line-number="14"></td> |
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464 | <td id="LC14" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">'</span>be_polyelectrolyte<span class="pl-pds">'</span></span>,</td> |
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465 | </tr> |
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466 | <tr> |
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467 | <td id="L15" class="blob-num js-line-number" data-line-number="15"></td> |
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468 | <td id="LC15" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">'</span>correlation_length<span class="pl-pds">'</span></span>,</td> |
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469 | </tr> |
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470 | <tr> |
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471 | <td id="L16" class="blob-num js-line-number" data-line-number="16"></td> |
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472 | <td id="LC16" class="blob-code blob-code-inner js-file-line">]</td> |
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473 | </tr> |
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474 | <tr> |
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475 | <td id="L17" class="blob-num js-line-number" data-line-number="17"></td> |
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476 | <td id="LC17" class="blob-code blob-code-inner js-file-line"> |
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477 | </td> |
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478 | </tr> |
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479 | <tr> |
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480 | <td id="L18" class="blob-num js-line-number" data-line-number="18"></td> |
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481 | <td id="LC18" class="blob-code blob-code-inner js-file-line"><span class="pl-c"># List of models which SasView versions don't contain the explicit 'background' argument.</span></td> |
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482 | </tr> |
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483 | <tr> |
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484 | <td id="L19" class="blob-num js-line-number" data-line-number="19"></td> |
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485 | <td id="LC19" class="blob-code blob-code-inner js-file-line"><span class="pl-c"># When converting such a model, please update this list.</span></td> |
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486 | </tr> |
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487 | <tr> |
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488 | <td id="L20" class="blob-num js-line-number" data-line-number="20"></td> |
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489 | <td id="LC20" class="blob-code blob-code-inner js-file-line"><span class="pl-c1">MODELS_WITHOUT_BACKGROUND</span> <span class="pl-k">=</span> [</td> |
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490 | </tr> |
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491 | <tr> |
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492 | <td id="L21" class="blob-num js-line-number" data-line-number="21"></td> |
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493 | <td id="LC21" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">'</span>guinier<span class="pl-pds">'</span></span>,</td> |
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494 | </tr> |
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495 | <tr> |
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496 | <td id="L22" class="blob-num js-line-number" data-line-number="22"></td> |
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497 | <td id="LC22" class="blob-code blob-code-inner js-file-line">]</td> |
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498 | </tr> |
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499 | <tr> |
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500 | <td id="L23" class="blob-num js-line-number" data-line-number="23"></td> |
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501 | <td id="LC23" class="blob-code blob-code-inner js-file-line"> |
---|
502 | </td> |
---|
503 | </tr> |
---|
504 | <tr> |
---|
505 | <td id="L24" class="blob-num js-line-number" data-line-number="24"></td> |
---|
506 | <td id="LC24" class="blob-code blob-code-inner js-file-line"><span class="pl-c1">PD_DOT</span> <span class="pl-k">=</span> [</td> |
---|
507 | </tr> |
---|
508 | <tr> |
---|
509 | <td id="L25" class="blob-num js-line-number" data-line-number="25"></td> |
---|
510 | <td id="LC25" class="blob-code blob-code-inner js-file-line"> (<span class="pl-s"><span class="pl-pds">"</span><span class="pl-pds">"</span></span>, <span class="pl-s"><span class="pl-pds">"</span><span class="pl-pds">"</span></span>),</td> |
---|
511 | </tr> |
---|
512 | <tr> |
---|
513 | <td id="L26" class="blob-num js-line-number" data-line-number="26"></td> |
---|
514 | <td id="LC26" class="blob-code blob-code-inner js-file-line"> (<span class="pl-s"><span class="pl-pds">"</span>_pd<span class="pl-pds">"</span></span>, <span class="pl-s"><span class="pl-pds">"</span>.width<span class="pl-pds">"</span></span>),</td> |
---|
515 | </tr> |
---|
516 | <tr> |
---|
517 | <td id="L27" class="blob-num js-line-number" data-line-number="27"></td> |
---|
518 | <td id="LC27" class="blob-code blob-code-inner js-file-line"> (<span class="pl-s"><span class="pl-pds">"</span>_pd_n<span class="pl-pds">"</span></span>, <span class="pl-s"><span class="pl-pds">"</span>.npts<span class="pl-pds">"</span></span>),</td> |
---|
519 | </tr> |
---|
520 | <tr> |
---|
521 | <td id="L28" class="blob-num js-line-number" data-line-number="28"></td> |
---|
522 | <td id="LC28" class="blob-code blob-code-inner js-file-line"> (<span class="pl-s"><span class="pl-pds">"</span>_pd_nsigma<span class="pl-pds">"</span></span>, <span class="pl-s"><span class="pl-pds">"</span>.nsigmas<span class="pl-pds">"</span></span>),</td> |
---|
523 | </tr> |
---|
524 | <tr> |
---|
525 | <td id="L29" class="blob-num js-line-number" data-line-number="29"></td> |
---|
526 | <td id="LC29" class="blob-code blob-code-inner js-file-line"> (<span class="pl-s"><span class="pl-pds">"</span>_pd_type<span class="pl-pds">"</span></span>, <span class="pl-s"><span class="pl-pds">"</span>.type<span class="pl-pds">"</span></span>),</td> |
---|
527 | </tr> |
---|
528 | <tr> |
---|
529 | <td id="L30" class="blob-num js-line-number" data-line-number="30"></td> |
---|
530 | <td id="LC30" class="blob-code blob-code-inner js-file-line"> ]</td> |
---|
531 | </tr> |
---|
532 | <tr> |
---|
533 | <td id="L31" class="blob-num js-line-number" data-line-number="31"></td> |
---|
534 | <td id="LC31" class="blob-code blob-code-inner js-file-line"><span class="pl-k">def</span> <span class="pl-en">_convert_pars</span>(<span class="pl-smi">pars</span>, <span class="pl-smi">mapping</span>):</td> |
---|
535 | </tr> |
---|
536 | <tr> |
---|
537 | <td id="L32" class="blob-num js-line-number" data-line-number="32"></td> |
---|
538 | <td id="LC32" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">"""</span></span></td> |
---|
539 | </tr> |
---|
540 | <tr> |
---|
541 | <td id="L33" class="blob-num js-line-number" data-line-number="33"></td> |
---|
542 | <td id="LC33" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> Rename the parameters and any associated polydispersity attributes.</span></td> |
---|
543 | </tr> |
---|
544 | <tr> |
---|
545 | <td id="L34" class="blob-num js-line-number" data-line-number="34"></td> |
---|
546 | <td id="LC34" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> <span class="pl-pds">"""</span></span></td> |
---|
547 | </tr> |
---|
548 | <tr> |
---|
549 | <td id="L35" class="blob-num js-line-number" data-line-number="35"></td> |
---|
550 | <td id="LC35" class="blob-code blob-code-inner js-file-line"> newpars <span class="pl-k">=</span> pars.copy()</td> |
---|
551 | </tr> |
---|
552 | <tr> |
---|
553 | <td id="L36" class="blob-num js-line-number" data-line-number="36"></td> |
---|
554 | <td id="LC36" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">for</span> new, old <span class="pl-k">in</span> mapping.items():</td> |
---|
555 | </tr> |
---|
556 | <tr> |
---|
557 | <td id="L37" class="blob-num js-line-number" data-line-number="37"></td> |
---|
558 | <td id="LC37" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> old <span class="pl-k">==</span> new: <span class="pl-k">continue</span></td> |
---|
559 | </tr> |
---|
560 | <tr> |
---|
561 | <td id="L38" class="blob-num js-line-number" data-line-number="38"></td> |
---|
562 | <td id="LC38" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">for</span> pd, dot <span class="pl-k">in</span> <span class="pl-c1">PD_DOT</span>:</td> |
---|
563 | </tr> |
---|
564 | <tr> |
---|
565 | <td id="L39" class="blob-num js-line-number" data-line-number="39"></td> |
---|
566 | <td id="LC39" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> old<span class="pl-k">+</span>dot <span class="pl-k">in</span> newpars:</td> |
---|
567 | </tr> |
---|
568 | <tr> |
---|
569 | <td id="L40" class="blob-num js-line-number" data-line-number="40"></td> |
---|
570 | <td id="LC40" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> new <span class="pl-k">is</span> <span class="pl-k">not</span> <span class="pl-c1">None</span>:</td> |
---|
571 | </tr> |
---|
572 | <tr> |
---|
573 | <td id="L41" class="blob-num js-line-number" data-line-number="41"></td> |
---|
574 | <td id="LC41" class="blob-code blob-code-inner js-file-line"> newpars[new<span class="pl-k">+</span>pd] <span class="pl-k">=</span> pars[old<span class="pl-k">+</span>dot]</td> |
---|
575 | </tr> |
---|
576 | <tr> |
---|
577 | <td id="L42" class="blob-num js-line-number" data-line-number="42"></td> |
---|
578 | <td id="LC42" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">del</span> newpars[old<span class="pl-k">+</span>dot]</td> |
---|
579 | </tr> |
---|
580 | <tr> |
---|
581 | <td id="L43" class="blob-num js-line-number" data-line-number="43"></td> |
---|
582 | <td id="LC43" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">return</span> newpars</td> |
---|
583 | </tr> |
---|
584 | <tr> |
---|
585 | <td id="L44" class="blob-num js-line-number" data-line-number="44"></td> |
---|
586 | <td id="LC44" class="blob-code blob-code-inner js-file-line"> |
---|
587 | </td> |
---|
588 | </tr> |
---|
589 | <tr> |
---|
590 | <td id="L45" class="blob-num js-line-number" data-line-number="45"></td> |
---|
591 | <td id="LC45" class="blob-code blob-code-inner js-file-line"><span class="pl-k">def</span> <span class="pl-en">_rescale_sld</span>(<span class="pl-smi">pars</span>):</td> |
---|
592 | </tr> |
---|
593 | <tr> |
---|
594 | <td id="L46" class="blob-num js-line-number" data-line-number="46"></td> |
---|
595 | <td id="LC46" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">"""</span></span></td> |
---|
596 | </tr> |
---|
597 | <tr> |
---|
598 | <td id="L47" class="blob-num js-line-number" data-line-number="47"></td> |
---|
599 | <td id="LC47" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> rescale all sld parameters in the new model definition by 1e6 so the</span></td> |
---|
600 | </tr> |
---|
601 | <tr> |
---|
602 | <td id="L48" class="blob-num js-line-number" data-line-number="48"></td> |
---|
603 | <td id="LC48" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> numbers are nicer. Relies on the fact that all sld parameters in the</span></td> |
---|
604 | </tr> |
---|
605 | <tr> |
---|
606 | <td id="L49" class="blob-num js-line-number" data-line-number="49"></td> |
---|
607 | <td id="LC49" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> new model definition end with sld.</span></td> |
---|
608 | </tr> |
---|
609 | <tr> |
---|
610 | <td id="L50" class="blob-num js-line-number" data-line-number="50"></td> |
---|
611 | <td id="LC50" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> <span class="pl-pds">"""</span></span></td> |
---|
612 | </tr> |
---|
613 | <tr> |
---|
614 | <td id="L51" class="blob-num js-line-number" data-line-number="51"></td> |
---|
615 | <td id="LC51" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">return</span> <span class="pl-c1">dict</span>((p, (v<span class="pl-k">*</span><span class="pl-c1">1e6</span> <span class="pl-k">if</span> p.endswith(<span class="pl-s"><span class="pl-pds">'</span>sld<span class="pl-pds">'</span></span>) <span class="pl-k">else</span> v))</td> |
---|
616 | </tr> |
---|
617 | <tr> |
---|
618 | <td id="L52" class="blob-num js-line-number" data-line-number="52"></td> |
---|
619 | <td id="LC52" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">for</span> p, v <span class="pl-k">in</span> pars.items())</td> |
---|
620 | </tr> |
---|
621 | <tr> |
---|
622 | <td id="L53" class="blob-num js-line-number" data-line-number="53"></td> |
---|
623 | <td id="LC53" class="blob-code blob-code-inner js-file-line"> |
---|
624 | </td> |
---|
625 | </tr> |
---|
626 | <tr> |
---|
627 | <td id="L54" class="blob-num js-line-number" data-line-number="54"></td> |
---|
628 | <td id="LC54" class="blob-code blob-code-inner js-file-line"><span class="pl-k">def</span> <span class="pl-en">convert_model</span>(<span class="pl-smi">name</span>, <span class="pl-smi">pars</span>):</td> |
---|
629 | </tr> |
---|
630 | <tr> |
---|
631 | <td id="L55" class="blob-num js-line-number" data-line-number="55"></td> |
---|
632 | <td id="LC55" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">"""</span></span></td> |
---|
633 | </tr> |
---|
634 | <tr> |
---|
635 | <td id="L56" class="blob-num js-line-number" data-line-number="56"></td> |
---|
636 | <td id="LC56" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> Convert model from old style parameter names to new style.</span></td> |
---|
637 | </tr> |
---|
638 | <tr> |
---|
639 | <td id="L57" class="blob-num js-line-number" data-line-number="57"></td> |
---|
640 | <td id="LC57" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> <span class="pl-pds">"""</span></span></td> |
---|
641 | </tr> |
---|
642 | <tr> |
---|
643 | <td id="L58" class="blob-num js-line-number" data-line-number="58"></td> |
---|
644 | <td id="LC58" class="blob-code blob-code-inner js-file-line"> _, _ <span class="pl-k">=</span> name, pars <span class="pl-c"># lint</span></td> |
---|
645 | </tr> |
---|
646 | <tr> |
---|
647 | <td id="L59" class="blob-num js-line-number" data-line-number="59"></td> |
---|
648 | <td id="LC59" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">raise</span> <span class="pl-c1">NotImplementedError</span></td> |
---|
649 | </tr> |
---|
650 | <tr> |
---|
651 | <td id="L60" class="blob-num js-line-number" data-line-number="60"></td> |
---|
652 | <td id="LC60" class="blob-code blob-code-inner js-file-line"> <span class="pl-c"># need to load all new models in order to determine old=>new</span></td> |
---|
653 | </tr> |
---|
654 | <tr> |
---|
655 | <td id="L61" class="blob-num js-line-number" data-line-number="61"></td> |
---|
656 | <td id="LC61" class="blob-code blob-code-inner js-file-line"> <span class="pl-c"># model name mapping</span></td> |
---|
657 | </tr> |
---|
658 | <tr> |
---|
659 | <td id="L62" class="blob-num js-line-number" data-line-number="62"></td> |
---|
660 | <td id="LC62" class="blob-code blob-code-inner js-file-line"> |
---|
661 | </td> |
---|
662 | </tr> |
---|
663 | <tr> |
---|
664 | <td id="L63" class="blob-num js-line-number" data-line-number="63"></td> |
---|
665 | <td id="LC63" class="blob-code blob-code-inner js-file-line"><span class="pl-k">def</span> <span class="pl-en">_unscale_sld</span>(<span class="pl-smi">pars</span>):</td> |
---|
666 | </tr> |
---|
667 | <tr> |
---|
668 | <td id="L64" class="blob-num js-line-number" data-line-number="64"></td> |
---|
669 | <td id="LC64" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">"""</span></span></td> |
---|
670 | </tr> |
---|
671 | <tr> |
---|
672 | <td id="L65" class="blob-num js-line-number" data-line-number="65"></td> |
---|
673 | <td id="LC65" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> rescale all sld parameters in the new model definition by 1e6 so the</span></td> |
---|
674 | </tr> |
---|
675 | <tr> |
---|
676 | <td id="L66" class="blob-num js-line-number" data-line-number="66"></td> |
---|
677 | <td id="LC66" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> numbers are nicer. Relies on the fact that all sld parameters in the</span></td> |
---|
678 | </tr> |
---|
679 | <tr> |
---|
680 | <td id="L67" class="blob-num js-line-number" data-line-number="67"></td> |
---|
681 | <td id="LC67" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> new model definition end with sld.</span></td> |
---|
682 | </tr> |
---|
683 | <tr> |
---|
684 | <td id="L68" class="blob-num js-line-number" data-line-number="68"></td> |
---|
685 | <td id="LC68" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> <span class="pl-pds">"""</span></span></td> |
---|
686 | </tr> |
---|
687 | <tr> |
---|
688 | <td id="L69" class="blob-num js-line-number" data-line-number="69"></td> |
---|
689 | <td id="LC69" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">return</span> <span class="pl-c1">dict</span>((p, (v<span class="pl-k">*</span><span class="pl-c1">1e-6</span> <span class="pl-k">if</span> p.endswith(<span class="pl-s"><span class="pl-pds">'</span>sld<span class="pl-pds">'</span></span>) <span class="pl-k">else</span> v))</td> |
---|
690 | </tr> |
---|
691 | <tr> |
---|
692 | <td id="L70" class="blob-num js-line-number" data-line-number="70"></td> |
---|
693 | <td id="LC70" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">for</span> p, v <span class="pl-k">in</span> pars.items())</td> |
---|
694 | </tr> |
---|
695 | <tr> |
---|
696 | <td id="L71" class="blob-num js-line-number" data-line-number="71"></td> |
---|
697 | <td id="LC71" class="blob-code blob-code-inner js-file-line"> |
---|
698 | </td> |
---|
699 | </tr> |
---|
700 | <tr> |
---|
701 | <td id="L72" class="blob-num js-line-number" data-line-number="72"></td> |
---|
702 | <td id="LC72" class="blob-code blob-code-inner js-file-line"><span class="pl-k">def</span> <span class="pl-en">_remove_pd</span>(<span class="pl-smi">pars</span>, <span class="pl-smi">key</span>, <span class="pl-smi">name</span>):</td> |
---|
703 | </tr> |
---|
704 | <tr> |
---|
705 | <td id="L73" class="blob-num js-line-number" data-line-number="73"></td> |
---|
706 | <td id="LC73" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">"""</span></span></td> |
---|
707 | </tr> |
---|
708 | <tr> |
---|
709 | <td id="L74" class="blob-num js-line-number" data-line-number="74"></td> |
---|
710 | <td id="LC74" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> Remove polydispersity from the parameter list.</span></td> |
---|
711 | </tr> |
---|
712 | <tr> |
---|
713 | <td id="L75" class="blob-num js-line-number" data-line-number="75"></td> |
---|
714 | <td id="LC75" class="blob-code blob-code-inner js-file-line"><span class="pl-s"></span></td> |
---|
715 | </tr> |
---|
716 | <tr> |
---|
717 | <td id="L76" class="blob-num js-line-number" data-line-number="76"></td> |
---|
718 | <td id="LC76" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> Note: operates in place</span></td> |
---|
719 | </tr> |
---|
720 | <tr> |
---|
721 | <td id="L77" class="blob-num js-line-number" data-line-number="77"></td> |
---|
722 | <td id="LC77" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> <span class="pl-pds">"""</span></span></td> |
---|
723 | </tr> |
---|
724 | <tr> |
---|
725 | <td id="L78" class="blob-num js-line-number" data-line-number="78"></td> |
---|
726 | <td id="LC78" class="blob-code blob-code-inner js-file-line"> <span class="pl-c"># Bumps style parameter names</span></td> |
---|
727 | </tr> |
---|
728 | <tr> |
---|
729 | <td id="L79" class="blob-num js-line-number" data-line-number="79"></td> |
---|
730 | <td id="LC79" class="blob-code blob-code-inner js-file-line"> pd <span class="pl-k">=</span> pars.pop(key<span class="pl-k">+</span><span class="pl-s"><span class="pl-pds">"</span>.width<span class="pl-pds">"</span></span>, <span class="pl-c1">0.0</span>)</td> |
---|
731 | </tr> |
---|
732 | <tr> |
---|
733 | <td id="L80" class="blob-num js-line-number" data-line-number="80"></td> |
---|
734 | <td id="LC80" class="blob-code blob-code-inner js-file-line"> pd_n <span class="pl-k">=</span> pars.pop(key<span class="pl-k">+</span><span class="pl-s"><span class="pl-pds">"</span>.npts<span class="pl-pds">"</span></span>, <span class="pl-c1">0</span>)</td> |
---|
735 | </tr> |
---|
736 | <tr> |
---|
737 | <td id="L81" class="blob-num js-line-number" data-line-number="81"></td> |
---|
738 | <td id="LC81" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> pd <span class="pl-k">!=</span> <span class="pl-c1">0.0</span> <span class="pl-k">and</span> pd_n <span class="pl-k">!=</span> <span class="pl-c1">0</span>:</td> |
---|
739 | </tr> |
---|
740 | <tr> |
---|
741 | <td id="L82" class="blob-num js-line-number" data-line-number="82"></td> |
---|
742 | <td id="LC82" class="blob-code blob-code-inner js-file-line"> warnings.warn(<span class="pl-s"><span class="pl-pds">"</span>parameter <span class="pl-c1">%s</span> not polydisperse in sasview <span class="pl-c1">%s</span><span class="pl-pds">"</span></span><span class="pl-k">%</span>(key, name))</td> |
---|
743 | </tr> |
---|
744 | <tr> |
---|
745 | <td id="L83" class="blob-num js-line-number" data-line-number="83"></td> |
---|
746 | <td id="LC83" class="blob-code blob-code-inner js-file-line"> pars.pop(key<span class="pl-k">+</span><span class="pl-s"><span class="pl-pds">"</span>.nsigmas<span class="pl-pds">"</span></span>, <span class="pl-c1">None</span>)</td> |
---|
747 | </tr> |
---|
748 | <tr> |
---|
749 | <td id="L84" class="blob-num js-line-number" data-line-number="84"></td> |
---|
750 | <td id="LC84" class="blob-code blob-code-inner js-file-line"> pars.pop(key<span class="pl-k">+</span><span class="pl-s"><span class="pl-pds">"</span>.type<span class="pl-pds">"</span></span>, <span class="pl-c1">None</span>)</td> |
---|
751 | </tr> |
---|
752 | <tr> |
---|
753 | <td id="L85" class="blob-num js-line-number" data-line-number="85"></td> |
---|
754 | <td id="LC85" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">return</span> pars</td> |
---|
755 | </tr> |
---|
756 | <tr> |
---|
757 | <td id="L86" class="blob-num js-line-number" data-line-number="86"></td> |
---|
758 | <td id="LC86" class="blob-code blob-code-inner js-file-line"> |
---|
759 | </td> |
---|
760 | </tr> |
---|
761 | <tr> |
---|
762 | <td id="L87" class="blob-num js-line-number" data-line-number="87"></td> |
---|
763 | <td id="LC87" class="blob-code blob-code-inner js-file-line"><span class="pl-k">def</span> <span class="pl-en">_revert_pars</span>(<span class="pl-smi">pars</span>, <span class="pl-smi">mapping</span>):</td> |
---|
764 | </tr> |
---|
765 | <tr> |
---|
766 | <td id="L88" class="blob-num js-line-number" data-line-number="88"></td> |
---|
767 | <td id="LC88" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">"""</span></span></td> |
---|
768 | </tr> |
---|
769 | <tr> |
---|
770 | <td id="L89" class="blob-num js-line-number" data-line-number="89"></td> |
---|
771 | <td id="LC89" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> Rename the parameters and any associated polydispersity attributes.</span></td> |
---|
772 | </tr> |
---|
773 | <tr> |
---|
774 | <td id="L90" class="blob-num js-line-number" data-line-number="90"></td> |
---|
775 | <td id="LC90" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> <span class="pl-pds">"""</span></span></td> |
---|
776 | </tr> |
---|
777 | <tr> |
---|
778 | <td id="L91" class="blob-num js-line-number" data-line-number="91"></td> |
---|
779 | <td id="LC91" class="blob-code blob-code-inner js-file-line"> newpars <span class="pl-k">=</span> pars.copy()</td> |
---|
780 | </tr> |
---|
781 | <tr> |
---|
782 | <td id="L92" class="blob-num js-line-number" data-line-number="92"></td> |
---|
783 | <td id="LC92" class="blob-code blob-code-inner js-file-line"> |
---|
784 | </td> |
---|
785 | </tr> |
---|
786 | <tr> |
---|
787 | <td id="L93" class="blob-num js-line-number" data-line-number="93"></td> |
---|
788 | <td id="LC93" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">for</span> new, old <span class="pl-k">in</span> mapping.items():</td> |
---|
789 | </tr> |
---|
790 | <tr> |
---|
791 | <td id="L94" class="blob-num js-line-number" data-line-number="94"></td> |
---|
792 | <td id="LC94" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">for</span> pd, dot <span class="pl-k">in</span> <span class="pl-c1">PD_DOT</span>:</td> |
---|
793 | </tr> |
---|
794 | <tr> |
---|
795 | <td id="L95" class="blob-num js-line-number" data-line-number="95"></td> |
---|
796 | <td id="LC95" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> old <span class="pl-k">and</span> old<span class="pl-k">+</span>pd <span class="pl-k">==</span> new<span class="pl-k">+</span>dot:</td> |
---|
797 | </tr> |
---|
798 | <tr> |
---|
799 | <td id="L96" class="blob-num js-line-number" data-line-number="96"></td> |
---|
800 | <td id="LC96" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">continue</span></td> |
---|
801 | </tr> |
---|
802 | <tr> |
---|
803 | <td id="L97" class="blob-num js-line-number" data-line-number="97"></td> |
---|
804 | <td id="LC97" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> new<span class="pl-k">+</span>pd <span class="pl-k">in</span> newpars:</td> |
---|
805 | </tr> |
---|
806 | <tr> |
---|
807 | <td id="L98" class="blob-num js-line-number" data-line-number="98"></td> |
---|
808 | <td id="LC98" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> old <span class="pl-k">is</span> <span class="pl-k">not</span> <span class="pl-c1">None</span>:</td> |
---|
809 | </tr> |
---|
810 | <tr> |
---|
811 | <td id="L99" class="blob-num js-line-number" data-line-number="99"></td> |
---|
812 | <td id="LC99" class="blob-code blob-code-inner js-file-line"> newpars[old<span class="pl-k">+</span>dot] <span class="pl-k">=</span> pars[new<span class="pl-k">+</span>pd]</td> |
---|
813 | </tr> |
---|
814 | <tr> |
---|
815 | <td id="L100" class="blob-num js-line-number" data-line-number="100"></td> |
---|
816 | <td id="LC100" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">del</span> newpars[new<span class="pl-k">+</span>pd]</td> |
---|
817 | </tr> |
---|
818 | <tr> |
---|
819 | <td id="L101" class="blob-num js-line-number" data-line-number="101"></td> |
---|
820 | <td id="LC101" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">for</span> k <span class="pl-k">in</span> <span class="pl-c1">list</span>(newpars.keys()):</td> |
---|
821 | </tr> |
---|
822 | <tr> |
---|
823 | <td id="L102" class="blob-num js-line-number" data-line-number="102"></td> |
---|
824 | <td id="LC102" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">for</span> pd, dot <span class="pl-k">in</span> <span class="pl-c1">PD_DOT</span>[<span class="pl-c1">1</span>:]: <span class="pl-c"># skip "" => ""</span></td> |
---|
825 | </tr> |
---|
826 | <tr> |
---|
827 | <td id="L103" class="blob-num js-line-number" data-line-number="103"></td> |
---|
828 | <td id="LC103" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> k.endswith(pd):</td> |
---|
829 | </tr> |
---|
830 | <tr> |
---|
831 | <td id="L104" class="blob-num js-line-number" data-line-number="104"></td> |
---|
832 | <td id="LC104" class="blob-code blob-code-inner js-file-line"> newpars[k[:<span class="pl-k">-</span><span class="pl-c1">len</span>(pd)]<span class="pl-k">+</span>dot] <span class="pl-k">=</span> newpars[k]</td> |
---|
833 | </tr> |
---|
834 | <tr> |
---|
835 | <td id="L105" class="blob-num js-line-number" data-line-number="105"></td> |
---|
836 | <td id="LC105" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">del</span> newpars[k]</td> |
---|
837 | </tr> |
---|
838 | <tr> |
---|
839 | <td id="L106" class="blob-num js-line-number" data-line-number="106"></td> |
---|
840 | <td id="LC106" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">return</span> newpars</td> |
---|
841 | </tr> |
---|
842 | <tr> |
---|
843 | <td id="L107" class="blob-num js-line-number" data-line-number="107"></td> |
---|
844 | <td id="LC107" class="blob-code blob-code-inner js-file-line"> |
---|
845 | </td> |
---|
846 | </tr> |
---|
847 | <tr> |
---|
848 | <td id="L108" class="blob-num js-line-number" data-line-number="108"></td> |
---|
849 | <td id="LC108" class="blob-code blob-code-inner js-file-line"><span class="pl-k">def</span> <span class="pl-en">revert_model</span>(<span class="pl-smi">model_definition</span>, <span class="pl-smi">pars</span>):</td> |
---|
850 | </tr> |
---|
851 | <tr> |
---|
852 | <td id="L109" class="blob-num js-line-number" data-line-number="109"></td> |
---|
853 | <td id="LC109" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">"""</span></span></td> |
---|
854 | </tr> |
---|
855 | <tr> |
---|
856 | <td id="L110" class="blob-num js-line-number" data-line-number="110"></td> |
---|
857 | <td id="LC110" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> Convert model from new style parameter names to old style.</span></td> |
---|
858 | </tr> |
---|
859 | <tr> |
---|
860 | <td id="L111" class="blob-num js-line-number" data-line-number="111"></td> |
---|
861 | <td id="LC111" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> <span class="pl-pds">"""</span></span></td> |
---|
862 | </tr> |
---|
863 | <tr> |
---|
864 | <td id="L112" class="blob-num js-line-number" data-line-number="112"></td> |
---|
865 | <td id="LC112" class="blob-code blob-code-inner js-file-line"> mapping <span class="pl-k">=</span> model_definition.oldpars</td> |
---|
866 | </tr> |
---|
867 | <tr> |
---|
868 | <td id="L113" class="blob-num js-line-number" data-line-number="113"></td> |
---|
869 | <td id="LC113" class="blob-code blob-code-inner js-file-line"> oldname <span class="pl-k">=</span> model_definition.oldname</td> |
---|
870 | </tr> |
---|
871 | <tr> |
---|
872 | <td id="L114" class="blob-num js-line-number" data-line-number="114"></td> |
---|
873 | <td id="LC114" class="blob-code blob-code-inner js-file-line"> oldpars <span class="pl-k">=</span> _revert_pars(_unscale_sld(pars), mapping)</td> |
---|
874 | </tr> |
---|
875 | <tr> |
---|
876 | <td id="L115" class="blob-num js-line-number" data-line-number="115"></td> |
---|
877 | <td id="LC115" class="blob-code blob-code-inner js-file-line"> |
---|
878 | </td> |
---|
879 | </tr> |
---|
880 | <tr> |
---|
881 | <td id="L116" class="blob-num js-line-number" data-line-number="116"></td> |
---|
882 | <td id="LC116" class="blob-code blob-code-inner js-file-line"> <span class="pl-c"># Note: update compare.constrain_pars to match</span></td> |
---|
883 | </tr> |
---|
884 | <tr> |
---|
885 | <td id="L117" class="blob-num js-line-number" data-line-number="117"></td> |
---|
886 | <td id="LC117" class="blob-code blob-code-inner js-file-line"> name <span class="pl-k">=</span> model_definition.name</td> |
---|
887 | </tr> |
---|
888 | <tr> |
---|
889 | <td id="L118" class="blob-num js-line-number" data-line-number="118"></td> |
---|
890 | <td id="LC118" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> name <span class="pl-k">in</span> <span class="pl-c1">MODELS_WITHOUT_SCALE</span>:</td> |
---|
891 | </tr> |
---|
892 | <tr> |
---|
893 | <td id="L119" class="blob-num js-line-number" data-line-number="119"></td> |
---|
894 | <td id="LC119" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> oldpars.pop(<span class="pl-s"><span class="pl-pds">'</span>scale<span class="pl-pds">'</span></span>, <span class="pl-c1">1.0</span>) <span class="pl-k">!=</span> <span class="pl-c1">1.0</span>:</td> |
---|
895 | </tr> |
---|
896 | <tr> |
---|
897 | <td id="L120" class="blob-num js-line-number" data-line-number="120"></td> |
---|
898 | <td id="LC120" class="blob-code blob-code-inner js-file-line"> warnings.warn(<span class="pl-s"><span class="pl-pds">"</span>parameter scale not used in sasview <span class="pl-c1">%s</span><span class="pl-pds">"</span></span><span class="pl-k">%</span>name)</td> |
---|
899 | </tr> |
---|
900 | <tr> |
---|
901 | <td id="L121" class="blob-num js-line-number" data-line-number="121"></td> |
---|
902 | <td id="LC121" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">elif</span> name <span class="pl-k">in</span> <span class="pl-c1">MODELS_WITHOUT_BACKGROUND</span>:</td> |
---|
903 | </tr> |
---|
904 | <tr> |
---|
905 | <td id="L122" class="blob-num js-line-number" data-line-number="122"></td> |
---|
906 | <td id="LC122" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> oldpars.pop(<span class="pl-s"><span class="pl-pds">'</span>background<span class="pl-pds">'</span></span>, <span class="pl-c1">0.0</span>) <span class="pl-k">!=</span> <span class="pl-c1">0.0</span>:</td> |
---|
907 | </tr> |
---|
908 | <tr> |
---|
909 | <td id="L123" class="blob-num js-line-number" data-line-number="123"></td> |
---|
910 | <td id="LC123" class="blob-code blob-code-inner js-file-line"> warnings.warn(<span class="pl-s"><span class="pl-pds">"</span>parameter background not used in sasview <span class="pl-c1">%s</span><span class="pl-pds">"</span></span><span class="pl-k">%</span>name)</td> |
---|
911 | </tr> |
---|
912 | <tr> |
---|
913 | <td id="L124" class="blob-num js-line-number" data-line-number="124"></td> |
---|
914 | <td id="LC124" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">elif</span> <span class="pl-c1">getattr</span>(model_definition, <span class="pl-s"><span class="pl-pds">'</span>category<span class="pl-pds">'</span></span>, <span class="pl-c1">None</span>) <span class="pl-k">==</span> <span class="pl-s"><span class="pl-pds">'</span>structure-factor<span class="pl-pds">'</span></span>:</td> |
---|
915 | </tr> |
---|
916 | <tr> |
---|
917 | <td id="L125" class="blob-num js-line-number" data-line-number="125"></td> |
---|
918 | <td id="LC125" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> oldpars.pop(<span class="pl-s"><span class="pl-pds">'</span>scale<span class="pl-pds">'</span></span>, <span class="pl-c1">1.0</span>) <span class="pl-k">!=</span> <span class="pl-c1">1.0</span>:</td> |
---|
919 | </tr> |
---|
920 | <tr> |
---|
921 | <td id="L126" class="blob-num js-line-number" data-line-number="126"></td> |
---|
922 | <td id="LC126" class="blob-code blob-code-inner js-file-line"> warnings.warn(<span class="pl-s"><span class="pl-pds">"</span>parameter scale not used in sasview <span class="pl-c1">%s</span><span class="pl-pds">"</span></span><span class="pl-k">%</span>name)</td> |
---|
923 | </tr> |
---|
924 | <tr> |
---|
925 | <td id="L127" class="blob-num js-line-number" data-line-number="127"></td> |
---|
926 | <td id="LC127" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> oldpars.pop(<span class="pl-s"><span class="pl-pds">'</span>background<span class="pl-pds">'</span></span>, <span class="pl-c1">0.0</span>) <span class="pl-k">!=</span> <span class="pl-c1">0.0</span>:</td> |
---|
927 | </tr> |
---|
928 | <tr> |
---|
929 | <td id="L128" class="blob-num js-line-number" data-line-number="128"></td> |
---|
930 | <td id="LC128" class="blob-code blob-code-inner js-file-line"> warnings.warn(<span class="pl-s"><span class="pl-pds">"</span>parameter background not used in sasview <span class="pl-c1">%s</span><span class="pl-pds">"</span></span><span class="pl-k">%</span>name)</td> |
---|
931 | </tr> |
---|
932 | <tr> |
---|
933 | <td id="L129" class="blob-num js-line-number" data-line-number="129"></td> |
---|
934 | <td id="LC129" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">elif</span> name <span class="pl-k">==</span> <span class="pl-s"><span class="pl-pds">'</span>pearl_necklace<span class="pl-pds">'</span></span>:</td> |
---|
935 | </tr> |
---|
936 | <tr> |
---|
937 | <td id="L130" class="blob-num js-line-number" data-line-number="130"></td> |
---|
938 | <td id="LC130" class="blob-code blob-code-inner js-file-line"> _remove_pd(oldpars, <span class="pl-s"><span class="pl-pds">'</span>num_pearls<span class="pl-pds">'</span></span>, name)</td> |
---|
939 | </tr> |
---|
940 | <tr> |
---|
941 | <td id="L131" class="blob-num js-line-number" data-line-number="131"></td> |
---|
942 | <td id="LC131" class="blob-code blob-code-inner js-file-line"> _remove_pd(oldpars, <span class="pl-s"><span class="pl-pds">'</span>thick_string<span class="pl-pds">'</span></span>, name)</td> |
---|
943 | </tr> |
---|
944 | <tr> |
---|
945 | <td id="L132" class="blob-num js-line-number" data-line-number="132"></td> |
---|
946 | <td id="LC132" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">elif</span> name <span class="pl-k">==</span> <span class="pl-s"><span class="pl-pds">'</span>rpa<span class="pl-pds">'</span></span>:</td> |
---|
947 | </tr> |
---|
948 | <tr> |
---|
949 | <td id="L133" class="blob-num js-line-number" data-line-number="133"></td> |
---|
950 | <td id="LC133" class="blob-code blob-code-inner js-file-line"> <span class="pl-c"># convert scattering lengths from femtometers to centimeters</span></td> |
---|
951 | </tr> |
---|
952 | <tr> |
---|
953 | <td id="L134" class="blob-num js-line-number" data-line-number="134"></td> |
---|
954 | <td id="LC134" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">for</span> p <span class="pl-k">in</span> <span class="pl-s"><span class="pl-pds">"</span>La<span class="pl-pds">"</span></span>, <span class="pl-s"><span class="pl-pds">"</span>Lb<span class="pl-pds">"</span></span>, <span class="pl-s"><span class="pl-pds">"</span>Lc<span class="pl-pds">"</span></span>, <span class="pl-s"><span class="pl-pds">"</span>Ld<span class="pl-pds">"</span></span>:</td> |
---|
955 | </tr> |
---|
956 | <tr> |
---|
957 | <td id="L135" class="blob-num js-line-number" data-line-number="135"></td> |
---|
958 | <td id="LC135" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> p <span class="pl-k">in</span> oldpars: oldpars[p] <span class="pl-k">*=</span> <span class="pl-c1">1e-13</span></td> |
---|
959 | </tr> |
---|
960 | <tr> |
---|
961 | <td id="L136" class="blob-num js-line-number" data-line-number="136"></td> |
---|
962 | <td id="LC136" class="blob-code blob-code-inner js-file-line"> |
---|
963 | </td> |
---|
964 | </tr> |
---|
965 | <tr> |
---|
966 | <td id="L137" class="blob-num js-line-number" data-line-number="137"></td> |
---|
967 | <td id="LC137" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">return</span> oldname, oldpars</td> |
---|
968 | </tr> |
---|
969 | <tr> |
---|
970 | <td id="L138" class="blob-num js-line-number" data-line-number="138"></td> |
---|
971 | <td id="LC138" class="blob-code blob-code-inner js-file-line"> |
---|
972 | </td> |
---|
973 | </tr> |
---|
974 | <tr> |
---|
975 | <td id="L139" class="blob-num js-line-number" data-line-number="139"></td> |
---|
976 | <td id="LC139" class="blob-code blob-code-inner js-file-line"><span class="pl-k">def</span> <span class="pl-en">constrain_new_to_old</span>(<span class="pl-smi">model_definition</span>, <span class="pl-smi">pars</span>):</td> |
---|
977 | </tr> |
---|
978 | <tr> |
---|
979 | <td id="L140" class="blob-num js-line-number" data-line-number="140"></td> |
---|
980 | <td id="LC140" class="blob-code blob-code-inner js-file-line"> <span class="pl-s"><span class="pl-pds">"""</span></span></td> |
---|
981 | </tr> |
---|
982 | <tr> |
---|
983 | <td id="L141" class="blob-num js-line-number" data-line-number="141"></td> |
---|
984 | <td id="LC141" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> Restrict parameter values to those that will match sasview.</span></td> |
---|
985 | </tr> |
---|
986 | <tr> |
---|
987 | <td id="L142" class="blob-num js-line-number" data-line-number="142"></td> |
---|
988 | <td id="LC142" class="blob-code blob-code-inner js-file-line"><span class="pl-s"> <span class="pl-pds">"""</span></span></td> |
---|
989 | </tr> |
---|
990 | <tr> |
---|
991 | <td id="L143" class="blob-num js-line-number" data-line-number="143"></td> |
---|
992 | <td id="LC143" class="blob-code blob-code-inner js-file-line"> <span class="pl-c"># Note: update convert.revert_model to match</span></td> |
---|
993 | </tr> |
---|
994 | <tr> |
---|
995 | <td id="L144" class="blob-num js-line-number" data-line-number="144"></td> |
---|
996 | <td id="LC144" class="blob-code blob-code-inner js-file-line"> name <span class="pl-k">=</span> model_definition.name</td> |
---|
997 | </tr> |
---|
998 | <tr> |
---|
999 | <td id="L145" class="blob-num js-line-number" data-line-number="145"></td> |
---|
1000 | <td id="LC145" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> name <span class="pl-k">in</span> <span class="pl-c1">MODELS_WITHOUT_SCALE</span>:</td> |
---|
1001 | </tr> |
---|
1002 | <tr> |
---|
1003 | <td id="L146" class="blob-num js-line-number" data-line-number="146"></td> |
---|
1004 | <td id="LC146" class="blob-code blob-code-inner js-file-line"> pars[<span class="pl-s"><span class="pl-pds">'</span>scale<span class="pl-pds">'</span></span>] <span class="pl-k">=</span> <span class="pl-c1">1</span></td> |
---|
1005 | </tr> |
---|
1006 | <tr> |
---|
1007 | <td id="L147" class="blob-num js-line-number" data-line-number="147"></td> |
---|
1008 | <td id="LC147" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">elif</span> name <span class="pl-k">in</span> <span class="pl-c1">MODELS_WITHOUT_BACKGROUND</span>:</td> |
---|
1009 | </tr> |
---|
1010 | <tr> |
---|
1011 | <td id="L148" class="blob-num js-line-number" data-line-number="148"></td> |
---|
1012 | <td id="LC148" class="blob-code blob-code-inner js-file-line"> pars[<span class="pl-s"><span class="pl-pds">'</span>background<span class="pl-pds">'</span></span>] <span class="pl-k">=</span> <span class="pl-c1">0</span></td> |
---|
1013 | </tr> |
---|
1014 | <tr> |
---|
1015 | <td id="L149" class="blob-num js-line-number" data-line-number="149"></td> |
---|
1016 | <td id="LC149" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">elif</span> name <span class="pl-k">==</span> <span class="pl-s"><span class="pl-pds">'</span>pearl_necklace<span class="pl-pds">'</span></span>:</td> |
---|
1017 | </tr> |
---|
1018 | <tr> |
---|
1019 | <td id="L150" class="blob-num js-line-number" data-line-number="150"></td> |
---|
1020 | <td id="LC150" class="blob-code blob-code-inner js-file-line"> pars[<span class="pl-s"><span class="pl-pds">'</span>string_thickness_pd_n<span class="pl-pds">'</span></span>] <span class="pl-k">=</span> <span class="pl-c1">0</span></td> |
---|
1021 | </tr> |
---|
1022 | <tr> |
---|
1023 | <td id="L151" class="blob-num js-line-number" data-line-number="151"></td> |
---|
1024 | <td id="LC151" class="blob-code blob-code-inner js-file-line"> pars[<span class="pl-s"><span class="pl-pds">'</span>number_of_pearls_pd_n<span class="pl-pds">'</span></span>] <span class="pl-k">=</span> <span class="pl-c1">0</span></td> |
---|
1025 | </tr> |
---|
1026 | <tr> |
---|
1027 | <td id="L152" class="blob-num js-line-number" data-line-number="152"></td> |
---|
1028 | <td id="LC152" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">elif</span> name <span class="pl-k">==</span> <span class="pl-s"><span class="pl-pds">'</span>rpa<span class="pl-pds">'</span></span>:</td> |
---|
1029 | </tr> |
---|
1030 | <tr> |
---|
1031 | <td id="L153" class="blob-num js-line-number" data-line-number="153"></td> |
---|
1032 | <td id="LC153" class="blob-code blob-code-inner js-file-line"> pars[<span class="pl-s"><span class="pl-pds">'</span>case_num<span class="pl-pds">'</span></span>] <span class="pl-k">=</span> <span class="pl-c1">int</span>(pars[<span class="pl-s"><span class="pl-pds">'</span>case_num<span class="pl-pds">'</span></span>])</td> |
---|
1033 | </tr> |
---|
1034 | <tr> |
---|
1035 | <td id="L154" class="blob-num js-line-number" data-line-number="154"></td> |
---|
1036 | <td id="LC154" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">elif</span> <span class="pl-c1">getattr</span>(model_definition, <span class="pl-s"><span class="pl-pds">'</span>category<span class="pl-pds">'</span></span>, <span class="pl-c1">None</span>) <span class="pl-k">==</span> <span class="pl-s"><span class="pl-pds">'</span>structure-factor<span class="pl-pds">'</span></span>:</td> |
---|
1037 | </tr> |
---|
1038 | <tr> |
---|
1039 | <td id="L155" class="blob-num js-line-number" data-line-number="155"></td> |
---|
1040 | <td id="LC155" class="blob-code blob-code-inner js-file-line"> pars[<span class="pl-s"><span class="pl-pds">'</span>scale<span class="pl-pds">'</span></span>], pars[<span class="pl-s"><span class="pl-pds">'</span>background<span class="pl-pds">'</span></span>] <span class="pl-k">=</span> <span class="pl-c1">1</span>, <span class="pl-c1">0</span></td> |
---|
1041 | </tr> |
---|
1042 | <tr> |
---|
1043 | <td id="L156" class="blob-num js-line-number" data-line-number="156"></td> |
---|
1044 | <td id="LC156" class="blob-code blob-code-inner js-file-line"> |
---|
1045 | </td> |
---|
1046 | </tr> |
---|
1047 | </table> |
---|
1048 | |
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1049 | </div> |
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1050 | |
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1051 | </div> |
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1055 | <!-- </textarea> --><!-- '"` --><form accept-charset="UTF-8" action="" class="js-jump-to-line-form" method="get"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /></div> |
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1056 | <input class="linejump-input js-jump-to-line-field" type="text" placeholder="Jump to line…" aria-label="Jump to line" autofocus> |
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1057 | <button type="submit" class="btn">Go</button> |
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1083 | <svg aria-hidden="true" class="octicon octicon-mark-github" height="24" role="img" title="GitHub " version="1.1" viewBox="0 0 16 16" width="24"><path d="M8 0C3.58 0 0 3.58 0 8c0 3.54 2.29 6.53 5.47 7.59 0.4 0.07 0.55-0.17 0.55-0.38 0-0.19-0.01-0.82-0.01-1.49-2.01 0.37-2.53-0.49-2.69-0.94-0.09-0.23-0.48-0.94-0.82-1.13-0.28-0.15-0.68-0.52-0.01-0.53 0.63-0.01 1.08 0.58 1.23 0.82 0.72 1.21 1.87 0.87 2.33 0.66 0.07-0.52 0.28-0.87 0.51-1.07-1.78-0.2-3.64-0.89-3.64-3.95 0-0.87 0.31-1.59 0.82-2.15-0.08-0.2-0.36-1.02 0.08-2.12 0 0 0.67-0.21 2.2 0.82 0.64-0.18 1.32-0.27 2-0.27 0.68 0 1.36 0.09 2 0.27 1.53-1.04 2.2-0.82 2.2-0.82 0.44 1.1 0.16 1.92 0.08 2.12 0.51 0.56 0.82 1.27 0.82 2.15 0 3.07-1.87 3.75-3.65 3.95 0.29 0.25 0.54 0.73 0.54 1.48 0 1.07-0.01 1.93-0.01 2.2 0 0.21 0.15 0.46 0.55 0.38C13.71 14.53 16 11.53 16 8 16 3.58 12.42 0 8 0z"></path></svg> |
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1094 | </div> |
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1095 | |
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1096 | |
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1097 | |
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1098 | |
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1099 | |
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1100 | |
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1101 | |
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1102 | <div id="ajax-error-message" class="flash flash-error"> |
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1103 | <svg aria-hidden="true" class="octicon octicon-alert" height="16" role="img" version="1.1" viewBox="0 0 16 16" width="16"><path d="M15.72 12.5l-6.85-11.98C8.69 0.21 8.36 0.02 8 0.02s-0.69 0.19-0.87 0.5l-6.85 11.98c-0.18 0.31-0.18 0.69 0 1C0.47 13.81 0.8 14 1.15 14h13.7c0.36 0 0.69-0.19 0.86-0.5S15.89 12.81 15.72 12.5zM9 12H7V10h2V12zM9 9H7V5h2V9z"></path></svg> |
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1104 | <button type="button" class="flash-close js-flash-close js-ajax-error-dismiss" aria-label="Dismiss error"> |
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1105 | <svg aria-hidden="true" class="octicon octicon-x" height="16" role="img" version="1.1" viewBox="0 0 12 16" width="12"><path d="M7.48 8l3.75 3.75-1.48 1.48-3.75-3.75-3.75 3.75-1.48-1.48 3.75-3.75L0.77 4.25l1.48-1.48 3.75 3.75 3.75-3.75 1.48 1.48-3.75 3.75z"></path></svg> |
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1106 | </button> |
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1107 | Something went wrong with that request. Please try again. |
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1108 | </div> |
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1109 | |
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1110 | |
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1111 | |
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1112 | <script crossorigin="anonymous" integrity="sha256-7lIbjp+srGj/J+k/w64PjtgR17+eQ06E9LnqIneAsIQ=" src="https://assets-cdn.github.com/assets/frameworks-ee521b8e9facac68ff27e93fc3ae0f8ed811d7bf9e434e84f4b9ea227780b084.js"></script> |
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1114 | |
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1115 | |
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1116 | |
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1117 | <div class="js-stale-session-flash stale-session-flash flash flash-warn flash-banner hidden"> |
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1118 | <svg aria-hidden="true" class="octicon octicon-alert" height="16" role="img" version="1.1" viewBox="0 0 16 16" width="16"><path d="M15.72 12.5l-6.85-11.98C8.69 0.21 8.36 0.02 8 0.02s-0.69 0.19-0.87 0.5l-6.85 11.98c-0.18 0.31-0.18 0.69 0 1C0.47 13.81 0.8 14 1.15 14h13.7c0.36 0 0.69-0.19 0.86-0.5S15.89 12.81 15.72 12.5zM9 12H7V10h2V12zM9 9H7V5h2V9z"></path></svg> |
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1122 | <div class="facebox" id="facebox" style="display:none;"> |
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1123 | <div class="facebox-popup"> |
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1124 | <div class="facebox-content" role="dialog" aria-labelledby="facebox-header" aria-describedby="facebox-description"> |
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1125 | </div> |
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1126 | <button type="button" class="facebox-close js-facebox-close" aria-label="Close modal"> |
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1127 | <svg aria-hidden="true" class="octicon octicon-x" height="16" role="img" version="1.1" viewBox="0 0 12 16" width="12"><path d="M7.48 8l3.75 3.75-1.48 1.48-3.75-3.75-3.75 3.75-1.48-1.48 3.75-3.75L0.77 4.25l1.48-1.48 3.75 3.75 3.75-3.75 1.48 1.48-3.75 3.75z"></path></svg> |
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1128 | </button> |
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1130 | </div> |
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1132 | </body> |
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