[0076d6e] | 1 | close all |
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| 2 | clear all |
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| 3 | |
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| 4 | R0=20; %mean radius. unit: Angstroms |
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[cdd676e] | 5 | PDI=0.1; %unit: relative polydispersity |
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[0076d6e] | 6 | volF=0.1; |
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| 7 | contrast=6e-6; %contrast,angstrom^-1, scattering length density difference |
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| 8 | |
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[cdd676e] | 9 | Filename='testPolydisperseGaussianSphere.dat'; |
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[0076d6e] | 10 | |
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| 11 | Q=[0.001:0.001:0.8]; |
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| 12 | |
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| 13 | N=10; |
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| 14 | |
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| 15 | deltaR=R0*PDI; |
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| 16 | SplitN=100; |
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| 17 | R=[R0/N:deltaR/SplitN:R0+5*deltaR]; |
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| 18 | |
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| 19 | FGaussian=1/sqrt(2*pi*deltaR^2)*exp(-(R-R0).^2/2/deltaR^2); |
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| 20 | |
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| 21 | Ni=FGaussian*deltaR/SplitN; |
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| 22 | %trapz(R,FGaussian) |
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| 23 | %sum(FGaussian*deltaR/SplitN) |
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| 24 | sum(Ni) |
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| 25 | |
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| 26 | |
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| 27 | Vi=4*pi*R.^3/3; |
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| 28 | AverageVolume=sum(Ni.*Vi); |
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| 29 | |
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| 30 | |
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| 31 | IQN=zeros(size(Q)); |
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| 32 | %IQ=sphereFormFactor(Q,R0); |
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| 33 | |
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| 34 | for i=1:length(R) |
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| 35 | IQN=IQN+Ni(i)*Vi(i)^2*contrast^2*sphereFormFactor(Q,R(i)); |
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| 36 | %IQ=1*AverageVolume^2*contrast^2*sphereFormFactor(Q,R0); |
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| 37 | %IQ=sphereFormFactor(Q,R(500)); |
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| 38 | end |
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| 39 | |
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| 40 | IQ=volF/AverageVolume*IQN; |
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| 41 | |
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| 42 | IQ=IQ*1e8; %convert from A^-1 to cm^-1 |
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| 43 | loglog(Q,IQ,'b.-') |
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| 44 | |
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| 45 | FQ=zeros(size(Q)); |
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| 46 | |
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| 47 | for i=1:length(R) |
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| 48 | FQ=FQ+Ni(i)*Vi(i)*contrast*3*(sin(Q*R(i)) - Q*R(i).*cos(Q*R(i))) ./ (Q*R(i)).^3; |
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| 49 | end |
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| 50 | |
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| 51 | beta=FQ.^2./IQN; |
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| 52 | figure |
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| 53 | semilogx(Q,beta,'g*-'); |
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| 54 | |
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| 55 | %stop |
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| 56 | |
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| 57 | NormIQN=IQN/IQN(1); |
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| 58 | |
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| 59 | FQ2=beta.*IQ; |
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| 60 | |
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| 61 | normQ=Q*R0*2; |
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| 62 | Sq=HSS_SQ(volF,normQ); |
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| 63 | |
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| 64 | figure |
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| 65 | loglog(Q,IQ,'bo-'); |
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| 66 | figure |
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| 67 | plot(Q,beta,'g*-'); |
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| 68 | figure |
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| 69 | plot(Q,Sq,'b.-'); |
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| 70 | figure |
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| 71 | Sq_eff=1+beta.*(Sq-1); |
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| 72 | plot(Q,Sq_eff,'gd-'); |
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| 73 | |
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| 74 | fileID=fopen(Filename,'w'); |
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[cdd676e] | 75 | |
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| 76 | FileString=strcat('Filename:',Filename, '**R0=', num2str(R0),'**PDI=', num2str(PDI),... |
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| 77 | '**contrast',num2str(contrast), '**volF=',num2str(volF)); |
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| 78 | Outputformat='File format : Q, <FQ>, <FQ^2>, PQ, betaQ, SQ, SQ_Eff'; |
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| 79 | fprintf(fileID,'%s\n', FileString); |
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| 80 | fprintf(fileID,'%s\n', Outputformat); |
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[0076d6e] | 81 | for i=1:length(Q) |
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[cdd676e] | 82 | %file format : Q, <FQ>, <FQ^2>, PQ, betaQ, SQ, SQ_Eff |
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| 83 | fprintf(fileID,'%e\t%e\t%e\t%e\t%e\t%e\t%e\n',... |
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| 84 | Q(i),FQ(i),IQN(i),IQ(i),beta(i),Sq(i),Sq_eff(i)); |
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[0076d6e] | 85 | end |
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| 86 | |
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| 87 | fclose(fileID) |
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| 88 | |
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