source:
sasmodels/doc/guide/resolution.rst
@
e077231
| Last change on this file since e077231 was 0db85af, checked in by Paul Kienzle <pkienzle@…>, 7 years ago | |
|---|---|
|
|
| File size: 9.0 KB | |
Resolution Functions
Sometimes the instrumental geometry used to acquire the experimental data has an impact on the clarity of features in the reduced scattering curve. For example, peaks or fringes might be slightly broadened. This is known as Q resolution smearing. To compensate for this effect one can either try and remove the resolution contribution - a process called desmearing - or add the resolution contribution into a model calculation/simulation (which by definition will be exact) to make it more representative of what has been measured experimentally - a process called smearing. Sasmodels does the latter.
Both smearing and desmearing rely on functions to describe the resolution effect. Sasmodels provides three smearing algorithms:
- Slit Smearing
- Pinhole Smearing
- 2D Smearing
The $Q$ resolution values should be determined by the data reduction software for the instrument and stored with the data file. If not, they will need to be set manually before fitting.
Slit Smearing
This type of smearing is normally only encountered with data from X-ray Kratky cameras or X-ray/neutron Bonse-Hart USAXS/USANS instruments.
The slit-smeared scattering intensity is defined by
where Norm is given by
[Equation 1]
The functions $W_v(v)$ and $W_u(u)$ refer to the slit width weighting function and the slit height weighting determined at the given $q$ point, respectively. It is assumed that the weighting function is described by a rectangular function, such that
[Equation 2]
and
[Equation 3]
so that $Delta q_alpha = int_0^infty dalpha, W_alpha(alpha)$ for $alpha$ as $v$ and $u$.
Here $Delta q_u$ and $Delta q_v$ stand for the the slit height (FWHM/2) and the slit width (FWHM/2) in $q$ space.
This simplifies the integral in Equation 1 to
[Equation 4]
which may be solved numerically, depending on the nature of $Delta q_u$ and $Delta q_v$.
Solution 1
For $Delta q_v = 0$ and $Delta q_u = text{constant}$
For discrete $q$ values, at the $q$ values of the data points and at the $q$ values extended up to $q_N = q_i + Delta q_u$ the smeared intensity can be approximately calculated as
[Equation 5]
where $W_{ij} = 0$ for $I_s$ when $j < i$ or $j > N-1$.
Solution 2
For $Delta q_v = text{constant}$ and $Delta q_u = 0$
Similar to Case 1
for $q_p = q_i - Delta q_v$ and $q_N = q_i + Delta q_v$
[Equation 6]
where $W_{ij} = 0$ for $I_s$ when $j < p$ or $j > N-1$.
Solution 3
For $Delta q_v = text{constant}$ and $Delta q_u = text{constant}$
In this case, the best way is to perform the integration of Equation 1 numerically for both slit height and slit width. However, the numerical integration is imperfect unless a large number of iterations, say, at least 10000 by 10000 for each element of the matrix $W$, is performed. This is usually too slow for routine use.
An alternative approach is used in sasmodels which assumes slit width << slit height. This method combines Solution 1 with the numerical integration for the slit width. Then
[Equation 7]
for $q_p = q_i - Delta q_v$ and $q_N = q_i + Delta q_v$
where $W_{ij} = 0$ for $I_s$ when $j < p$ or $j > N-1$.
Pinhole Smearing
This is the type of smearing normally encountered with data from synchrotron SAXS cameras and SANS instruments.
The pinhole smearing computation is performed in a similar fashion to the slit-smeared case above except that the weight function used is a Gaussian. Thus Equation 6 becomes
[Equation 8]
2D Smearing
The 2D smearing computation is performed in a similar fashion to the 1D pinhole smearing above except that the weight function used is a 2D elliptical Gaussian. Thus
[Equation 9]
In Equation 9, $x_0 = q cos(theta)$, $y_0 = q sin(theta)$, and the primed axes are all in the coordinate rotated by an angle $theta$ about the $z$-axis (see the figure below) so that $x'_0 = x_0 cos(theta) + y_0 sin(theta)$ and $y'_0 = -x_0 sin(theta) + y_0 cos(theta)$. Note that the rotation angle is zero for a $x$-$y$ symmetric elliptical Gaussian distribution. The $A$ is a normalization factor.
Coordinate axis rotation for 2D resolution calculation.
Now we consider a numerical integration where each of the bins in $theta$ and $R$ are evenly (this is to simplify the equation below) distributed by $Delta theta$ and $Delta R$ respectively, and it is further assumed that $I(x',y')$ is constant within the bins. Then
[Equation 10]
Since the weighting factor on each of the bins is known, it is convenient to transform $x'$-$y'$ back to $x$-$y$ coordinates (by rotating it by $-theta$ around the $z$-axis).
Then, for a polar symmetric smear
[Equation 11]
where
while for a $x$-$y$ symmetric smear
[Equation 12]
where
The current version of sasmodels uses Equation 11 for 2D smearing, assuming that all the Gaussian weighting functions are aligned in the polar coordinate.
Weighting & Normalization
In all the cases above, the weighting matrix $W$ is calculated on the first call to a smearing function, and includes ~60 $q$ values (finely and evenly binned) below (>0) and above the $q$ range of data in order to smear all data points for a given model and slit/pinhole size. The Norm factor is found numerically with the weighting matrix and applied on the computation of $I_s$.
Document History
