Index: ild.txt
===================================================================
--- build.txt	(revision 400155bab01bdb35b3cf83069f57cf9f47005bca)
+++ 	(revision )
@@ -1,96 +1,0 @@
-﻿=== Done ===
-Total number of model  wrappers created is 67
-running build
-running build_py
-package init file 'src\sas\dataloader\readers\schema\__init__.py' not found (or not a regular file)
-copying src\sas\perspectives\fitting\fitpage.py -> build\lib.win32-2.7\sas\perspectives\fitting
-copying src\sas\models\BarBellModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\BCCrystalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\BinaryHSModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CappedCylinderModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\Core2ndMomentModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CoreFourShellModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CoreShellBicelleModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CoreShellCylinderModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CoreShellEllipsoidModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CoreShellEllipsoidXTModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CoreShellModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CSParallelepipedModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CylinderModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\DABModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\DiamCylFunc.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\DiamEllipFunc.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\EllipsoidModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\EllipticalCylinderModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\FCCrystalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\FlexCylEllipXModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\FlexibleCylinderModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\FractalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\FractalO_Z.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\FuzzySphereModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\Gaussian.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\GelFitModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\HardsphereStructure.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\HayterMSAStructure.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\HollowCylinderModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LamellarFFHGModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LamellarModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LamellarPCrystalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LamellarPSHGModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LamellarPSModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LinearPearlsModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LogNormal.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\Lorentzian.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\MassFractalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\MassSurfaceFractal.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\MicelleSphCoreModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\MultiShellModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\OnionModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\ParallelepipedModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\PearlNecklaceModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\Poly_GaussCoil.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\PringlesModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\RaspBerryModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\RectangularHollowPrismInfThinWallsModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\RectangularHollowPrismModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\RectangularPrismModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\ReflAdvModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\ReflModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\RPAModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\SCCrystalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\Schulz.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\SLDCalFunc.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\SphereModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\SphereSLDModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\SquareWellStructure.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\StackedDisksModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\StarPolymer.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\StickyHSStructure.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\SurfaceFractalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\TeubnerStreyModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\TriaxialEllipsoidModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\TwoYukawaModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\VesicleModel.py -> build\lib.win32-2.7\sas\models
-running build_ext
-Compiling with mingw32 (64bit=False)
-building 'sas.models.sas_extension.c_models' extension
-C compiler: gcc -O2 -Wall -Wstrict-prototypes
-
-compile options: '-D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c'
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CBinaryHSModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cbinaryhsmodel.o
-Found executable C:\TDM-GCC-32\bin\gcc.exe
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CFlexibleCylinderModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cflexiblecylindermodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\triaxialellipsoid.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\triaxialellipsoid.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\schulz.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\schulz.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\massfractal.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\massfractal.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CSCCrystalModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\csccrystalmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCoreFourShellModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccorefourshellmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\logNormal.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lognormal.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CFractalModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cfractalmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CRaspBerryModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\craspberrymodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\HayterMSA.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\haytermsa.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\coreshellbicelle.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\coreshellbicelle.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\fuzzysphere.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\fuzzysphere.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\hollowcylinder.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\hollowcylinder.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCoreShellModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccoreshellmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCoreShellBicelleModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccoreshellbicellemodel.o
Index: cs/README-BUILD-TIPS.TXT
===================================================================
--- docs/README-BUILD-TIPS.TXT	(revision d09f0ae18fc84c04aebd2d791c2fca44dba326dd)
+++ 	(revision )
@@ -1,47 +1,0 @@
-Quick Intro for Building Sasview
-================================
-
-
-The build works in the usualy pythonic way:
-
-$ python setup.py build      # will build the package underneath 'build/'
-$ python setup.py install    # will install the package
-
-
-
-If you want to check the build without installing:
-
-$ python run.py              # will run the code in place (building the C code once, if required)
-
-
-
-To check all dependencies are met:
-
-$ python deps.py
-$ python check_packages.py 
-
-Both tell you different parts of the story, unfortunately.
-
-
-
-Build scripts that are used on http://build.sasview.org/ are in
-build_tools. Make sure the build is run first obviously.
-
-$ build_tools/jenkins_linux_build.sh
-$ build_tools/jenkins_linux_test.sh
-$ build_tools/jenkins_linux_pylint.sh
-
-The scripts can be customized using environment variables, but 
-should do a reasonable job as is in a sane setup.
-
-
-
-To build just the Sphinx docs:
-build_sphinx.py
-
-
-More information can be found here:
-
-http://www.sasview.org/help.html
-http://www.sasview.org/faq.html
-http://www.sasview.org/trac/wiki/DevNotes
Index: docs/README.TXT
===================================================================
--- docs/README.TXT	(revision 4651383a3535d97080dcb6acae70db5725714d3f)
+++ docs/README.TXT	(revision 4651383a3535d97080dcb6acae70db5725714d3f)
@@ -0,0 +1,43 @@
+Quick Intro for Building Sasview
+================================
+
+
+The build works in the usualy pythonic way:
+
+$ python setup.py build      # will build the package underneath 'build/'
+$ python setup.py install    # will install the package
+
+
+
+If you want to check the build without installing:
+
+$ python run.py              # will run the code in place (building the C code once, if required)
+
+
+
+To check all dependencies are met:
+
+$ python deps.py
+$ python check_packages.py 
+
+Both tell you different parts of the story, unfortunately.
+
+
+
+Build scripts that are used on http://build.sasview.org/ are in
+build_tools. Make sure the build is run first obviously.
+
+$ build_tools/jenkins_linux_build.sh
+$ build_tools/jenkins_linux_test.sh
+$ build_tools/jenkins_linux_pylint.sh
+
+The scripts can be customized using environment variables, but 
+should do a reasonable job as is in a sane setup.
+
+
+
+More information can be found here:
+
+http://www.sasview.org/help.html
+http://www.sasview.org/faq.html
+http://www.sasview.org/trac/wiki/DevNotes
Index: cs/pre-sphinx-docs/Graph_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/Graph_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,122 +1,0 @@
-<html>
-<body>
-
-<h4>Graph Menu</h4>
-<ul>
-<li><a href="#intro">Introduction</a></li>
-<li><a href="#reset">Reset Graph</a></li>
-<li><a href="#hide">Hide/Show/Delete Graph</a></li>
-<li><a href="#info">Data Info</a></li>
-<li><a href="#save">Save plot Image</a></li>
-<li><a href="#savedata">Save Data</a></li>
-<li><a href="#drag">Drag plot</a></li>
-<li><a href="#zoom">Zoom In/Out</a></li>
-<li><a href="#remove">Remove Data</a></li>
-<li><a href="#scale">Change Scale</a></li>
-<li><a href="#linearfit">Linear Fit</a></li>
-<li><a href="#modify">Other Graph Modifications</a></li>
-</ul>
-
-<h5><a name="intro">Introduction</a></h5>
-<p> 
-	Locating the pointer and right-clicking on a data/theory plot will bring a context menu.
-	On the menu, select a menu item. 
-</p>
-
-<h5><a name="reset">Reset Graph</a></h5>
-<p>
-	To reset the graph's axis range, right click on the plot and the context menu pops-up.
-	Select <b>Reset Graph</b> and the plot will take its initial range. 
-	Also the 'home' icon in tool bar will do the same.
-</p>
-
-<h5><a name="hide">Hide/Show/Delete Graph</a></h5>
-<p>
-	To Hide, click the Hide (bar) button in the tool bar.<br>
-	To Show, select the the 'Show' menuitem in the 'Graph' menu in the menu bar.<br>
-	To Delete, click the 'x' button in the title bar.<br>
-	Note: If a residuals graph (in Fitting) is hidden, it will not show up after computation.
-</p>
-
-<h5><a name="save"> Save Plot Image</a></h5>
-<p>
-	Right click on plot. Context menu will pop-up select save image [file name].A dialog
-	window opens and write a the name of the file to save and click on <b>Save Image.</b>
-</p>
-
-<h5><a name="info"> Data Info</a></h5>
-<p>
-	From the context menu, select 'Data Info' to see the data information dialog panel.
-</p>
-
-<h5><a name="savedata"> Save Data</a></h5>
-<p>
-	From the context menu, select 'Save points as a file' for 1D, or 'Save as a file(DAT)'
-	for 2D. Note that two formats, txt and xml, are available in 1D saving.
-</p>
-
-
-<h5><a name="drag"> Drag Plot</a></h5>
-<p>
-Select the <b>crossed arrows</b>  button on the plot panel <b>toolbar </b> to drag the plot.
-To disable dragging mode, unselect the same button on the toolbar.
-</p>
-
-<h5><a name="remove">Remove data from plot</a></h5>
-<p>
-	Highlight the plot and the context menu appears.Select <b>remove [file name]</b>.
-	The plot selected will disappear.
-</p>
-
-<h5><a name="zoom">Zoom In/Out</a></h5>
-<p>
- Select the <b>rectangle</b>  button on the plot panel <b>toolbar </b> to zoom in
- a region of the plot.
-</p>
-<p>
-To disable zoom mode, unselect the same button on the toolbar. 
-After zoom in a region, select <b>left arrow</b> or <b>right arrow</b>button on the toolbar
-to set the graph the the previous size.
-If a mouse wheel button is available, <b>zoom in/out</b> by scrolling the mouse wheel
- ( see 'Key combination' help for details).
-</p>
-<h5><a name="scale">Change Scale</a></h5>
-<p>
-	If the loaded data is a 1-D data.Changing scale or Data Representation will work as
-	followed:<b>right click</b> on the plot window.
-	A context menu pops-up  and select <b>Change Scale</b>. A dialog window titled<b>
-	select the scale of the graph</b> will pop-up then change the <b>x</b>, the <b>y</b>
-	and the <b>view </b> values as wish.
-	The 'view' option includes the axis scale short-cuts such as Linear, Guinier, Cross-sectional (XC)
-	Guinier, and Porod plot scale.  For a proper data set, these axis scales can be used to estimate 
-	Rg, Rod diameter, or Backgroud of neutron scattering data respectively (via 'Linear Fit'; see below).
-	<br>
-	For a 2D image, <b>Right click</b> on the image to pop-up the context
-	menu. Select <Toggle linear/Log scale> to switch from linear to log scale. The scale 
-	selected is printed on the statusbar.
-	
-</p>
-
-<h5><a name="linearfit">Linear Fit</a></h5>
-<p>
-	Linear fit is to perform a line model fitting keeping the scale of the plot. 
-	Highlight data to fit. 
-	From the context menu
-	select <b> Linear Fit</b>.A dialog window appears.
-	Change model initial parameters, data limits
-	and hit <b> fit</b> button. 
-	New parameters values are displayed and the line with the new 
-	parameters is added to the plot.
-	Especially for Guinier, XC Guinier, and Porod plot scale, this 'Linear Fit' will provides Rg, 
-	Rod diameter, and background, respectively.  The following figure shows an example for the Guinier scale. 
-	</p>
-	<br>
-	<img src="guinier_fit.png" /><br>
-	<br>
-
-<h5><a name="modify">Other Graph Modifications</a></h5>
-<p>
-	Some custom modifications of the symbols, text, axis, etc of the graph are provided
-</p>
-</body>
-</html>
Index: cs/pre-sphinx-docs/README-OLD-DOCS.TXT
===================================================================
--- docs/pre-sphinx-docs/README-OLD-DOCS.TXT	(revision 54c24374d9ecba0fd84783b83cd1326aa7a5ab02)
+++ 	(revision )
@@ -1,7 +1,0 @@
-Files *_v0.html are help files distributed with SasView v2.2.1.
-
-NIST_IGOR_SANS_Model_Docs_v4.10.pdf should be used as the primary reference 
-for queries about the model descriptions, NOT model_functions_v0.html.
-
-Steve King
-Feb 2015
Index: cs/pre-sphinx-docs/averaging_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/averaging_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,107 +1,0 @@
-<html>
-<body>
-
-<h4>2D Data Averaging</h4>
-<ul>
-<li><a href="#Description">Description</a></li>
-<li><a href="#How to use">How to Average? </a></li>
-<p> Available averagings: </p>
-<li><a href="#Circular Average">Perform Circular Average</a></li>
-<li><a href="#Masked Average">Masked Circular Average</a></li>
-<li><a href="#Sector"> Sector [Q view]</a></li>
-<li><a href="#Annulus"> Annulus [Phi view]</a></li>
-<li><a href="#Box sum"> Box sum</a></li>
-<li><a href="#Box averaging in Qx"> Box averaging in Qx</a></li>
-<li><a href="#Box averaging in Qy"> Box averaging in Qy</a></li>
-
-</ul>
-<h5><a name="Description">Description</a></h5>
-<p>
- This feature allows you to perform different types of averages on your data,
- and allows you to see what regions of the detector will contribute to 
- the average. 
- The region to be averaged will be drown and can be modified by dragging the lines around. 
-</p>
-
-
-<h5><a name="How to use">How to Average?</a></h5>
-<p>
-Right click on 2D data for the context menu to appear. Select one type of averages
-among <b>"sector [Q view]", "Annulus [Phi view]", "Box sum", "Box averaging in Qx ",
-"box averaging on Qy","Perform circular Average".</b>
-</p> 
-<p>
-A slicer will appear except for <b> "Perform circular Average"</b>
-that you can drag by clicking on a slicer 's marker. 
- When the marker is highlighted in red , it means that the slicer can change size.You can
- also move some of the slicer by simply drag its side when highlighted in red.
- the slicer size will be reset to its previous size if the user try to select a region greater 
- than the size of the data.
- 
-</p>
- <p>The user can also select a region to average when a slicer has been selected already by <b>right 
- clicking </b> on the context menu and selecting <b>Edit Slicer Parameters</b>. The dialog window 
- will appears and the user can enter values to selected a region or selected numbers of points to 
- plot <b>nbins</b>.
-</p>
- 
-<p>
- For <b>Box sum</b> , when the user selects this option, a new panel is created containing 
- the result of average of the sum of every pixels contains on  that data.The user can also enter 
- values to select a region.
-</p>
-
-<h5><a name="Circular Average">Perform Circular Average</a></h5>
-<p>
-It will perform and average in constant q-rings around the (x,y)
- pixel location of the beam center. 
-</p>
-
-
-<h5><a name="Masked Average">Masked Circular Average</a></h5>
-<p>
-This operation is same as 'Perform Circular Average' except that the masked region is excluded if masked.
-</p>
-
-<h5><a name="Sector">Sector [Q view]</a></h5>
-<p>
-It averages in constant q-arcs. The width of the sector
- is specified in degrees (+/- delta phi) each direction from the central angle (phi).
-</p>
-
-<h5><a name="Annulus"> Annulus [Phi view]</a></h5>
-<p>
-It performs an average between two q-values centered in (0,0),
- and averaged over a width of a specified number of pixels.
- The data is returned as a function of angle (phi) in degrees. 
- Moving one circle of this slicer
- to radius of zero corresponding to a circular averaging on radius qmax , 
- the outer circle.
-  The angle zero starts from the positive x-axis direction.
-</p>
-
-<h5><a name="Box sum"> Box sum</a></h5>
-<p>
-Perform the sum of counts in a 2D region of interest.When editing the slicer ,the user can 
-enter the length and the width the rectangle slicer and the coordinates of the center of this
-rectangle. 
-</p>
-<h5><a name="Box averaging in Qx"> Box averaging in Qx</a></h5>
-<p>
-Computes average I(Qx) for a region of interest. When editing the slicer ,the user can 
-control the length and the width the rectangle slicer. 
-The averaged output is calculated from the constant bins with rectangular shape.
-The resultant q values are nominal values, i.e., the central values of each bins on the x-axis.
-
-</p>
-<h5><a name="Box averaging in Qy"> Box averaging in Qy</a></h5>
-<p>
- Computes average I(Qy) for a region of interest.When editing the slicer ,the user can 
-control the length and the width the rectangle slicer. 
-The averaged output is calculated from the constant bins with rectangular shape.
-The resultant q values are nominal values, i.e., the central values of each bins on the y-axis.
-</p>
-
-</body>
-</html>
-
Index: cs/pre-sphinx-docs/batch_help_v0.html
===================================================================
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@@ -1,177 +1,0 @@
-<html>
-<head>
-</head>
-
-
-<body>
-<h4> Batch Fit </h4>
-
-<ul>
-<li><a href="#fitpage">Batch Fit</a></li>
-<li><a href="#batchwindow">Batch Window</a></li>
-</ul>
-
-<h5><font color="blue"><a name="fitpage">Batch Fit</a></font></h5>
-<p>
-Create <b>Batch Page </b> by selecting <b>Batch </b> radio button on 
-Data Explorer<font color="blue"><a href="#batch_button">(see figure below)</a></font>
-and for a new control page select 'New FitPage' in the 'Fitting' menubar.<br />
-</p>
-<br /><img src="batch_button_area.bmp" /><br /><br />
-<a name="figure1"><u>Figure 1: MenuBar</u></a><br />
-<br />
-Load Data to Data Explorer if not loaded. <br/>
-Select one or more data sets by checking the check boxes, and then make sure 
-that "Fitting" is selected in the dropdown menu next to the "Send To" button.
-Once ready, click the 'Send To' button to set data to a BatchPage. If already an empty batch page exists, it will be set there.
-Otherwise it will create a new Batch Page.
-Set up the model and the parameter values as same as a single fitting <font color="blue"><a href="single_fit_help.html">(see single fit help)</a></font>.
-The use 'Fit' button to perform the fitting.
-<br />Unlike a single fit, the results of the fittings will not return to the BatchPage'. Instead, a Grid window will be provided once the fitting is completed. 
-The Grid window is also accessible from the 'View' menu <font color="blue"><a href="#figure2">(see Figure 2)</a></font>. 
-<br /> Note that only one model is used for all the data. 
-The initial parameter values given in the control page will be used all the data fittings. If one wants the FitEngine to use the initial values 
-from the results of the previous data fitting (if any), choose the 'Chain Fitting' in the Fitting menubar, which will speed up the fitting 
-especially when you have lots of, and similar, data sets.
-</p>
-
-<h5><font color="blue"><a name="batchwindow">Batch Window</a></font></h5>
-<p>
-Batch Window provides an easy way to view the fit results, i.e., plot data, fits, and residuals.
-Batch window will be automatically shown after a batch fit is finished. <br />
-Once closed, 
-it can be opened anytime from the "View" menubar item <font color="blue"><a href="#figure2">(see Figure 2)</a></font>.<br />
-</p>
-<br /><br /><img src="restore_batch_window.bmp" /><br /><br />
-<a name="#figure2"><u>Figure 2: Edit Menu</u></a><br />
-<br />
-  <ul>
-	<li> <a href="#edit_grid"> Edit Grid </a></li>
-	<li><a href="#save_grid"> Save Grid </a></li>
-	<li><a href="#load_batch"> Open Batch Results </a></li>
-	<li><a href="#plot"> Plot </a></li>
-	<li><a href="#view"> View Column/Cell(s) </a></li>
-   </ul>
-
-
-
-<h5><font color="blue"><a name="edit_grid"> Edit Grid </a></font></h5>
-<p>
-Once a batch fit is completed, all fitted and fixed model parameters are displayed to the current sheet of
-the batch window except the errors of the parameters. To view the errors, 
-click on a given column then under <b> Edit </b> menubar item, and insert the desired parameter by selecting 
-a menu item with the appropriated label. Empty column can be inserted in the same way.
-A column value can be customized by editing an existing empty column.<br />
-To Remove column from the grid, select it, choose edit menu, and click the <b> 'remove' </b>  menu item.
-Any removed column should reinserted whenever needed.<br />
-All above options are also available when right clicking on a given column label 
-<font color="blue"><a href="#figure3">(see Figure 3)</a></font>.
-<b>Note:</b> A column always needs to be selected in order to remove or insert a column in the grid.<br /><br />
-
-<img src="edit_menu.bmp" /><br /><br />
-<a name="figure3"><u>Figure 3: Edit Menu</u></a><br />
-</p>
-
-
-<h5><font color="blue"><a name="save_grid"> Save Grid </a></font></h5>
-<p>
-To save the current page on the batch window, select the <b> 'File' </b> menubar item 
-<font color="blue"><a href="#figure4">(see Figure 4)</a></font>, then choose the <b> 'Save as' </b>
-menu item to save it as a .csv file. <br />
-<b>Note: </b> The grid doesn't save the data array, fits, and the array residuals. As a result, the 'View (fit) Results' functionality 
-will be lost  when reloading the saved file.<br />
-
-<font color="red">Warning! To ensure accuracy of saved fit results, It is recommended to save the current grid 
-before modifying it . </font>
-</p>
-
-
-<h5><font color="blue"><a name="load_batch"> Open Batch Results </a></font></h5>
-<p>
-Any <b> csv </b> file can be opened in the grid by selecting the <b> 'Open' </b> 
-under the <b> 'File' </b> menu in the Grid Window <font color="blue"><a href="#figure4">(see Figure 4)</a></font>. 
-All columns in the file will be displayed but insertion will not available. 
-Insertion will be available only when at least one column will be
-removed from the grid.
-
-<br /><img src="file_menu.bmp" /><br /><br />
-<a name="figure4"><u>Figure 4: MenuBar</u></a><br />
-</p>
-
-
-<h5><font color="blue"><a name="plot"> Plot </a></font></h5>
-<p>
-To <b> plot </b> a column versus another,
-select one column at the time, click the <b> 'Add' </b> button next to the text control
- of X/Y -axis <b> Selection Range </b>
-to plot the value of this column on the X/Y axis. Alternatively, all available range can be selected by clicking the column letter (eg. B).
-Repeat the same procedure the next axis. Finally, click the <b> 'Plot' </b> button. 
-When clicking on <b> Add </b> button, the grid
-will automatically fill the axis label, but  different labels and units can be 
-entered  in the correct controls before clicking 
-on the plot button.<br />
-<b>X/Y -Axis Selection Range </b> can be edited manually. These text controls 
-allows the following types of expression:<br />
-
-operation can be <font color="#00CC33"><b>+</b></font>,<font color="#00CC33">
-<b> -</b></font>, <font color="#00CC33"><b>*</b></font>, 
-<font color="#00CC33"><b>/</b></font>, or <font color="#00CC33">pow</font>.<br /> <br />
-
-1) if the current axis label range is a function of 1 or more columns,
- write this type of expression: <br />
-constant1  * <font color="#CC9933">column_name1</font>
-<font color="blue">[minimum row index :  maximum  row index]</font> 
-<font color="#00CC33">operator</font>  constant2 <font color="#00CC33">
-<b>*</b></font> <font color="#CC9933">column_name2</font>
-<font color="blue">[minimum row index :  maximum  row index]</font> <br />
-Example : <font color="#CC9933">radius</font>[2 : 5]<font color="#00CC33"><big><
-b> -</b></big></font> 3 <font color="#00CC33"><b>*</b></font>
- <font color="#CC9933">scale</font>[2 : 5] <br /><br />
-
-2) if only some values of a given column are need but the range between 
-the first row and the last row used is not continuous,<br />write
-the following expression in the text control: <br />
-<font color="#CC9933">column_name1</font>
-<font color="blue">[minimum row index1 :  maximum  row index1]</font>
-<font color="#00CC33"><big><b> , </b></big></font> 
-<font color="#CC9933">column_name1</font>
-<font color="blue">[minimum row index2 :  maximum  row index2]</font> <br />
-Example : <font color="#CC9933">radius </font><font color="blue"> [2 : 5] </font>
-<font color="#00CC33"><big><b> , </b></big></font><font color="#CC9933">radius </font>
- <font color="blue">[10 : 25] </font><br /><br />
-
-
-<b>Note: </b>Both text controls ( X and Y-axis Selection Ranges) need to be filled 
-with valid entries for plotting to work (the dY-bar is optional) 
-<font color="blue"><a href="#figure5">(see Figure 5)</a></font>.
-
-<br /><br /><img src="plot_button.bmp" /><br /><br />
-<a name="figure5"><u>Figure 5: Plotting</u></a><br />
-
-</p>
-
-
-<h5><font color="blue"><a name="view"> View Column/Cell(s) </a></font></h5>
-<p>
-Select 1 or more cells from the same column, click the <b> 'View Fits' </b>
-button  to display available curves. <br />
-
-For example, select the cells of the <b> 'Chi2' </b> column, then click the <b> 'View Fits' </b> 
-button. The plots generates will represent the <b>residuals </b> plots. <br />
- 
-
-If you select any cells of the <b> 'Data' </b> column and click the
-<b> 'View Fits' </b> button. It generates both
-<b> data and fits</b> in the graph <font color="blue"><a href="#figure6">(see Figure 6)</a></font>. <br />
-
-<b>Alternatively, just click the column letter (eg. B) 
-to choose all the available Data sets, then simply click the 'View Fits' button to plot the data and fits. 
-</b>
-<br />
-<br /><br /><img src="view_button.bmp" /><br /><br />
-<a name="figure6"><u>Figure 6: View Fits</u></a><br /><br />
-</p>
-
-
-</body>
-</html>
Index: cs/pre-sphinx-docs/category_manager_help_v0.html
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@@ -1,42 +1,0 @@
-<html>
-<body>
-<h4>Model Category Manager</h4>
-<ul>
-<li><a href="#description">Description</a></li>
-
-</ul>
-<h5><a name="description">Description</a></h5>
-<p>
-
-Our SAS models are, by default, classified into 5 categories; shapes, shape-independent, 
-structure factor, and customized models, where these categories (except the customized models) can be reassigned, added, and removed using 'Category Manager'.
-Each models can also be enabled(shown)/disabled(hidden) from the category that they
-belong.
-The Category Manager panel is accessible from the model category 'Modify' button in the fitting panel or the 'View/Category Manager' menu in the menu bar (Fig. 1).
-<br>
-1) Enable/Disable models: Check/uncheck the check boxes to enable/disable the models (Fig. 2).
-<br>
-2) Change category: Highlight a model in the list by left-clicking and click the 'Modify' button. In the 'Change Category' panel, 
-one can create/use a category for the model, then click the 'Add' button. In order to delete a category, select a category name and click the 'Remove Selected' 
-button (Fig. 3). 
-<br>
-3) To apply the changes made, hit the OK button. Otherwise, click the 'Cancel' button (Fig. 2).
-</p>
-<br>
-<img src="cat_fig0.bmp"/>
-<br>
-Fig.1
-<br>
-<br>
-<img src="cat_fig1.bmp"/>
-<br>
-Fig.2
-<br>
-<br>
-<img src="cat_fig2.bmp"/>
-<br>
-Fig.3
-<br>
-</body>
-
-</html>
Index: cs/pre-sphinx-docs/change_scale_help_v0.html
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@@ -1,16 +1,0 @@
-<html>
-<body>
-<h4>Change scale</h4>
-<p>
-	If the loaded data is a 1-D data.Changing scale or Data Representation will work as
-	followed:<b>right click</b> on the plot window.
-	A context menu pops-up  and select <b>Change Scale</b>. A dialog window titled<b>
-	select the scale of the graph</b> will pop-up then change the <b>x</b>, the <b>y</b>
-	and the <b>view </b> values as wish.
-	If the loaded data  is an image.<b>Right click</b> on the image to pop-up the context
-	menu. Select <Toggle linear/Log scale> to switch from linear to log scale. The scale 
-	selected is printed on the statusbar.
-	
-</p>
-</body>
-</html>
Index: cs/pre-sphinx-docs/data_explorer_help_v0.html
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@@ -1,101 +1,0 @@
-<html>
-<body>
-
-<h4>Data Explorer Options</h4>
-<ul>
-<li><a href="#intro">Introduction</a></li>
-<li><a href="#load">Load data</a></li>
-<li><a href="#handy">Handy menu</a></li>
-<li><a href="#active">Activate data</a></li>
-<li><a href="#remove">Remove data</a></li>
-<li><a href="#append">Append plot to graph</a></li>
-<li><a href="#new">Create new plot</a></li>
-<li><a href="#freeze">Freeze theory</a></li>
-<li><a href="#send">Send data to applications</a></li>
-</ul>
-
-<h5><a name="intro"><font color="blue">Introduction</font></a></h5>
-<p> 
-<b>Data Explorer</b> is a panel that allows the user more interactions with
-data. Some functionalities provided by the Data Explorer are also available
-through the context menu of plot panels or other menus of the applications.Under 
-menu <b>View</b> of the menubar, Data explorer can be toggled between Show and Hide 
-by clicking the menu <b>Show/Hide Data Explorer</b>. 
-</p>
-<p><b><font size=2>IMPORTANT!</font></b> When Data explorer is hidden, all the data loaded will
-be sent directly to the current active application, if possible. When data Explorer is shown
-data go first to the Data Explorer for the user to handle them later.
-</p>
-
-<h5><a name="load"><font color="blue">Load data</font></a></h5>
-<p>
-To Load data, click the button <b>Load Data</b>, then select one or more (holding Ctrl key)
-files to load into the application. In
-the list, the <b>Data</b> will be displayed as the name
-of each selected file.
- Expending this data by clicking the <b>+</b> symbol
-will display available information about the data such as data title if exists.
-</p>
-
-
-<h5><a name="handy"><font color="blue">Handy menu</font></a></h5>
-<p>
-For a quick Data-info/Save/Plot/3d-plot(2d only)/Edit-mask(2d only), high-light the data/theory,
- right-click, and select a proper item from the context menu.
- <br>
-<img src="hand_menu.png"/>
-</p>
-
-<h5><a name="active"><font color="blue">Activate data</font></a></h5>
-<p>
-To interact with data, check a data label and click on a button. Checking Data 
-make them active  for the button operation. Unchecking Data labels will
-deactivate them.
-</p>
-<p>
-There is a combo box labeled <b> Selection Options</b> that allows to activate 
-or select multiple data simultaneously. 
-</p>
-
-<h5><a name="remove"><font color="blue">Remove data</font></a></h5>
-<p>
-Remove data button  remove all reference of this data into the application.
-</p>
-<p>
-<font size=2><b>WARNING!</b></font> Remove data will stop any jobs 
-currently using the selected data.
-</p>
-
-<h5><a name="append"><font color="blue">Append plot to graph</font></a></h5>
-<p>
-Click on the button <b>Append To</b> to append selected Data to a plot panel on
-focus. Next to this button is a combo box containing available panels names. 
-Selecting a name from this combo box will set  the corresponding lot panel on 
-focus. If not plot panel is available, the combo box and button will be disable.
-2D Data cannot be appended to any plot panels . This operation can only be 
-performed on 1D data and plot panels currently containing 1D data.
-</p>
-
-<h5><a name="new"><font color="blue">Create new plot</font></a></h5>
-<p>
-Click on <b>New Plot</b> button to create a new plot panel where selected data 
-will be plotted.
-</p>
-
-<h5><a name="freeze"><font color="blue">Freeze theory</font></a></h5>
-<p>
-<b>Freeze Theory</b> button generate Data from selected theory. This operation 
-can only be performed when theory labels are selected. 
-</p>
-
-<h5><a name="send"><font color="blue">Send to application</font></a></h5>
-<p>
-Click on the button <b>Send To</b> to send Data to the current active control page.
-One of the single/batch mode can be selected only for Fitting. The batch mode provides
-serial (batch) fitting with one model, i.e., fitting one data by another data.
-Note that only the Fitting allows more that one data to be sent.
-
-</p>
-
-</body>
-</html>
Index: cs/pre-sphinx-docs/data_operator_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/data_operator_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,35 +1,0 @@
-<html>
-<body>
-<h4>Data Operator</h4>
-<ul>
-<li><a href="#Description">Description</a></li>
-<li><a href="#Howto">Howto?</a></li>
-</ul>
-<h5><a name="Description">Description</a></h5>
-<p>
-This dialog panel provides arithmetic operations between two data sets (the last data set could be a number): <br> 
-When the data1 and data2 are selected, their x (or qx and qy for 2D) values must match with each other.
-</p>
-
-<h5><a name="Howto">Howto?</a></h5>
-<p>
-1) Type the data name resulted from an operation.<br>
-2) Select a data/theory in the drop down menus. When the data2 is set to number,
- type a number in the text control box. <br>
-3) Select an arithmetic operator symbol; + (for addition), - (for subtraction), 
-* (for multiplication), / (for division), and | (for combination of two data sets).
-If two data sets are not match, the operation will fail and the background 
-color of the combo box items will turn to red (WIN only).<br>
-4) If the operation is successful, hit the Apply button to make the new data.
-Then the data name will be shown up in the data box in the data explorer.<br>
-Note: The errors and warnings will be displayed at the bottom of the SasView window. 
-</p> 
-<p>
-<img src="data_oper_pic.png">
-<br>
-Data operation dialog
-</p>
-
-</body>
-
-</html>
Index: cs/pre-sphinx-docs/density_calculator_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/density_calculator_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,33 +1,0 @@
-<html>
-<body>
-<h4>Mass Density Calculator</h4>
-<ul>
-<li><a href="#Description">Description</a></li>
-<li><a href="#HowTo">HowTo?</a></li>
-</ul>
-<h5><a name="Description">Description</a></h5>
-<p>
-This tool is to calculate the mass density from the molar volume or vice versa.
-To calculate the mass density, the chemical formula and molar volume should be
-provided.
-</p>
-
-
-<h5><a name="HowTo">HowTo?</a></h5>
-<p>
-1. Molecular Formula: The chemical formula of ONE molecule or ONE atom. For mixtures,
-the ratio of the each molecules should be used; for example, (H2O)0.5(D2O)0.5.
-</p>
-<p>
-2. Select input (molar volume or mass density) from combobox. Then type in the input value.</p>
-<p>
-3. Click the 'Calculate' button to perform the calculation.
-</p>
-<p>
-4. Outputs also include the molar mass (weight) that depends only on the chemical formula
-</p>
-<p><img src="density_tutor.gif">
-</p>
-</body>
-
-</html>
Index: cs/pre-sphinx-docs/fitting_key_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/fitting_key_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,47 +1,0 @@
-<html>
-<body>
-
-<h4>Key Combination</h4>
-<ul>
-<li><a href="#Copy">Copy & Paste</a></li>
-<li><a href="#Bookmark">Bookmark</a></li>
-<li><a href="#Ftol">FTolerance (Scipy)</a></li>
-</ul>
-<h5><a name="Copy">Copy & Paste</a></h5>
-<p>
-<h6>To copy the parameter values in a Fit(Model)panel to the clipboard:</h6></p>
-<p> <b>Ctrl(Cmd on MAC) + Left(Mouse)Click</b> on the panel.</p>
-<p>
-<h6>To paste the parameter values to a Fit(Model)panel from the clipboard:</h6></p>
-<p> <b>Ctrl(Cmd on MAC) + Shift + Left(Mouse)Click</b> on the panel.</p>
-<p> If this operation is successful, it will say so in the info line 
-at the bottom of the SV window.<p>
-<p>
-
-<p>
-<h5><a name="Bookmark">Bookmark</a></h5>
-<p>
-<h6>Bookmark of a fit-panel or model-panel status:</h6></p>
-<p> <b>(Mouse)Right-Click</b> and select the bookmark in the popup list.</p>
-
-<p>
-<h5><a name="GraphMenu">Graph Context Menu</a></h5>
-<p>
-<h6>To get the graph context menu to print, copy, save data, (2D)average, etc.:</h6></p>
-<p> <b>Locate the mouse point on the plot to highlight and 
-<b>(Mouse) Right Click</b> to bring up the full menu.</p>
-
-
-<h5><a name="Ftol">FTolerance (Scipy)</a></h5>
-<p>
-<h6>To change the ftol value of the Scipy FitEngine (leastsq):</h6></p>
-<p>First, make sure that the Fit panel has data and a model selected.
-<p> <b>Ctrl(Cmd on MAC) +  Shift + Alt + Right(Mouse)Click</b> on the panel.</p>
-<p>Then, set up the value in the dialog panel.</p>
-<p> If this operation is successful, the new ftol value will be displayed 
-in the info line at the bottom of the SV window.<p>
-<p> Note that increasing the ftol value may cause for the fitting to terminate 
-with higher chisqr.</p>
-</body>
-</html>
-
Index: cs/pre-sphinx-docs/glossaryhelp_v0.html
===================================================================
--- docs/pre-sphinx-docs/glossaryhelp_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,19 +1,0 @@
-<html>
-
-<body bgcolor="#ffffff">
-<h4>Table of Contents</h4>
-
-<ul>
-<li><a href="load_data_help.html">Load a File</a></li>
-<li><a href="single_fit_help.html">Single fit</a></li>
-<li><a href="simultaneous_fit_help.html">Simultaneous fit</a></li>
-<li><a href="change_scale_help.html">Change scale</a></li>
-<li><a href="reset_Graph_help.html">Reset graph</a></li>
-<li><a href="save_data_help.html">Save data</a></li>
-<li><a href="model_use_help.html">visualize model</a></li>
-<li><a href="sld_calculator_help.html">SLD Calculator</a></li>
-<li><a href ="doc/averaging_help.html">Data Averaging</a><br></li>
-</ul>
-
-</body>
-</html>
Index: cs/pre-sphinx-docs/graph_key_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/graph_key_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,40 +1,0 @@
-<html>
-<body>
-
-<h4>Key Combination</h4>
-<ul>
-<li><a href="#Float">Floating Panel</a></li>
-<li><a href="#GraphMenu">Graph Context Menu</a></li>
-<li><a href="#Zoom">Zoom In & Out</a></li>
-</ul>
-
-<h5><a name="Float">Floating Panel</a></h5>
-<p>
-<h6>For a graph panel to float on the top of the SV window:</h6></p>
-<p> Press the <b>Ctrl(Cmd on MAC) key</b> on dragging and placing a panel.
-Or if you want to make all plot panels float, select 'Float' from Graph/Preperences
-in the menu bar. Otherwise choose 'Dock'.</p>
-
-<p>
-<h5><a name="GraphMenu">Graph Context Menu</a></h5>
-<p>
-<h6>To get the graph context menu to print, copy, save data, (2D)average, etc.:</h6></p>
-<p> <b>Locate the mouse point on the plot to highlight and 
-<b>(Mouse) Right Click</b> to bring up the full menu.</p>
-
-<p>
-<h5><a name="Zoom">Zoom In and Out</a></h5>
-<p>
-<h6>To Zoom in or out the full plot:</h6></p>
-<p> <b>Locate the mouse point inside the graph which will be the center of the zooming,
-then <b>rotate MouseWheel</b>.</p>
-<p>
-<h6>To Zoom in or out the plot in x or y direction:</h6></p>
-<p> <b>Locate (and click) the mouse point near x (or y) axis just outside of the graph 
-and then <b>rotate MouseWheel</b>.</p>
-<p> Note that this works only on the 1D plots.</p>
-
-
-</body>
-</html>
-
Index: cs/pre-sphinx-docs/help_v0.html
===================================================================
--- docs/pre-sphinx-docs/help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,11 +1,0 @@
-<html>
-
-<frameset cols="120,*">
-
-<frame src="model_use_help.html">
-<frame src="load_data_help.html" name="showframe">
-
-</frameset>
-
-</html>
-
Index: cs/pre-sphinx-docs/invariant_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/invariant_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,395 +1,0 @@
-<html>
-
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
-<meta name=Generator content="Microsoft Word 12 (filtered)">
-<style>
-<!--
- /* Font Definitions */
- @font-face
-	{font-family:Wingdings;
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-	{margin-bottom:10.0pt;
-	line-height:115%;}
-@page Section1
-	{size:8.5in 11.0in;
-	margin:1.0in 1.0in 1.0in 1.0in;}
-div.Section1
-	{page:Section1;}
- /* List Definitions */
- ol
-	{margin-bottom:0in;}
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-	{margin-bottom:0in;}
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-</style>
-
-</head>
-
-<body lang=EN-US link=blue vlink=purple>
-
-<div class=Section1>
-
-<p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;line-height:normal'><span
-style='font-family:Symbol'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><b><span style='font-family:"Times New Roman","serif"'><a
-href="#invariant">Scattering Invariant</a></span></b></p>
-
-<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;line-height:normal'><span
-style='font-family:Symbol'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><a href="#volume"><b><span style='font-family:"Times New Roman","serif"'>Volume
-Fraction</span></b></a></p>
-
-<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;line-height:normal'><span
-style='font-family:Symbol'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><a href="#surface"><b><span style='font-family:"Times New Roman","serif"'>Specific
-Surface Area</span></b></a></p>
-
-<p class=MsoListParagraphCxSpLast style='text-indent:-.25in;line-height:normal'><span
-style='font-family:Symbol'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><a href="#howto"><b><span style='font-family:"Times New Roman","serif"'>How
-to Compute</span></b></a></p>
-
-<p class=MsoNormal style='line-height:normal'><b><span style='font-family:"Times New Roman","serif"'>The
-scattering <a name=invariant>invariant</a> (Q*)</span></b><span
-style='font-family:"Times New Roman","serif"'> </span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>The
-scattering invariant (Q*) is a model-independent quantity that can be easily
-calculated from </span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>scattering
-data. For two phase systems, the scattering invariant, Q*, is defined as the
-integral of</span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'> the
-square of the wave transfer (q) multiplied by the scattering cross section over
-the full range of q. </span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>Q*
-is given by the following equation, </span></p>
-
-<p class=MsoNormal style='line-height:normal'>
-
-<table cellpadding=0 cellspacing=0 align=left>
- <tr>
-  <td width=2 height=4></td>
- </tr>
- <tr>
-  <td></td>
-  <td><img width=127 height=35 src="image001.gif"></td>
- </tr>
-</table>
-
-<span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<p class=MsoNormal style='line-height:150%'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<br clear=ALL>
-
-<p class=MsoNormal style='line-height:150%'><span style='font-family:"Times New Roman","serif"'>This
-model independent quantity (Q*) is calculated from the scattering data that can
-be used to determine the volume fraction and the specific area of the sample
-under consideration. &nbsp;These quantities&nbsp;are useful in their own right
-and can be used in&nbsp;further analysis. With this scattering invariant module
-users will also be able to determine the consistency of those properties
-between data.&nbsp; There is no real data defined from zero to infinity, there
-usually have limited range. Q* is not really computed from zero to infinity.
-Our maximum q range is 1e-5 ~ 10 (1/A). The lower and/or higher q range than
-data given can be extrapolated by fitting some data nearby.</span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>The
-scattering invariant is computed as follow:</span></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;line-height:normal'><span
-style='font-family:"Arial","sans-serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><i><span style='font-family:"Times New Roman","serif"'>I(q)</span></i><span
-style='font-family:"Times New Roman","serif"'> =  <i>I(q)</i> w/o background :
-If the data includes a background, user sets the value to subtract the background
-for the Q* computation.</span></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;line-height:normal'><span
-style='font-family:"Arial","sans-serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'>Reset<i>
-I(q)  </i></span><span style='font-family:"Times New Roman","serif"'>= <i>I(q)*
-scaling factor </i>, delta<i>I(q) =  </i>delta<i>I(q)*scaling factor</i> : If
-non-zero scaling factor is given, it will be considered.</span></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;line-height:normal'><span
-style='font-family:"Arial","sans-serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'> Invariant:</span></p>
-
-<p class=MsoNormal style='margin-left:.25in;line-height:normal'>
-
-<table cellpadding=0 cellspacing=0 align=left>
- <tr>
-  <td width=45 height=12></td>
- </tr>
- <tr>
-  <td></td>
-  <td><img width=127 height=35 src="image001.gif"></td>
- </tr>
-</table>
-
-<span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<br clear=ALL>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'> </span></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
-style='font-family:"Times New Roman","serif"'>            where, <i>g =q</i>
-for the pinhole geometry and <i>g =<sub> </sub>q<sub>v</sub></i>(the slit
-height) for the slit geometry which can be given in data or as a value.</span></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;line-height:normal'><span
-style='font-family:"Arial","sans-serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'>&nbsp;Higher
-q-region (&gt;= qmax in data): </span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>            Power
-law (w/o background term) function = C/q<sup>4</sup> will be used </span></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
-style='font-family:"Times New Roman","serif"'>            where the constant
-C(=2pi(delta(rho))S<sub>v</sub>) is to be found by fitting part of data with
-the range of q<sub>N-m</sub>  to q<sub>N</sub> (m&lt;N).</span></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;line-height:normal'><span
-style='font-family:"Arial","sans-serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'> Lower
-q-region (&lt;= qmin in data): </span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>            Guinier
-function = <i>I<sub>0</sub>exp(-R<sub>g</sub><sup>2</sup>q<sup>2</sup>/3)</i>
-where I<sub>0</sub> and R<sub>g</sub> are obtained by fitting, </span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>            similarly
-to the high q region above.</span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>            Power
-law can also be used.</span></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>&nbsp;</span><b>The
-<a name=volume>volume </a>fraction</b>: </p>
-
-<p class=MsoNormal style='line-height:normal'><span style='position:absolute;
-z-index:3;margin-left:1px;margin-top:9px;width:161px;height:47px'><img
-width=161 height=47 src="image002.gif"></span><span
-style='font-family:"Times New Roman","serif"'> </span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'> </span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>where
-delta(rho) is the SLD contrast of which value is given by users.</span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='position:absolute;
-z-index:4;margin-left:1px;margin-top:29px;width:101px;height:45px'><img
-width=101 height=45 src="image003.gif"></span><span
-style='font-family:"Times New Roman","serif"'>Thus,  </span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'> where
-0 =&lt; <i>A</i> =&lt;1/4 in order for these values to be physically valid.</span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<p class=MsoNormal style='line-height:normal'><b><span style='font-family:"Times New Roman","serif"'>The
-<a name=surface>specific surface area </a>:</span></b></p>
-
-<p class=MsoNormal style='line-height:normal'>
-
-<table cellpadding=0 cellspacing=0 align=left>
- <tr>
-  <td width=1 height=3></td>
- </tr>
- <tr>
-  <td></td>
-  <td><img width=184 height=47 src="image004.gif"></td>
- </tr>
-</table>
-
-<b><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></b></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<br clear=ALL>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'> where
-<i>A</i> and <i>Q<sup>*</sup></i> are obtained from previous sections, and the
-Porod constant <i>C<sub>p</sub></i> is given by users. </span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<p class=MsoNormal style='line-height:normal'><b><span style='font-family:"Times New Roman","serif"'>Definitions:</span></b><span
-style='font-family:"Times New Roman","serif"'> </span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>Q&nbsp;:
-the magnitude of neutron (or X-ray) momentum transfer vector.</span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>I(Q):
-the scattering intensity as a function of the momentum transfer Q.</span></p>
-
-<p class=MsoNormal style='line-height:150%'><span style='font-family:"Times New Roman","serif"'>Invariant
-total is the sum of the invariant calculated from datas q range and the
-invariant resulting from extrapolation at low q range and at high q range if
-considered.</span></p>
-
-<p class=MsoNormal style='line-height:150%'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<p class=MsoNormal style='line-height:normal'><a name=reference><b><span
-style='font-family:"Times New Roman","serif"'>Reference</span></b></a><b><span
-style='font-family:"Times New Roman","serif"'>: </span></b></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>Porod's
-chapter (2) from  O. Glatter and O. Kratky, &quot;Small Angle X-Ray
-Scattering&quot;, Academic Press, New York, 1982</span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>Otto's
-web page: </span><a href="http://physchem.kfunigraz.ac.at/sm/"><span
-style='font-family:"Times New Roman","serif"'>http://physchem.kfunigraz.ac.at/sm/</span></a><span
-style='font-family:"Times New Roman","serif"'> </span></p>
-
-<p class=MsoNormal style='line-height:normal'><a name=howto><b><span
-style='font-family:"Times New Roman","serif"'>HowTo</span></b></a><b><span
-style='font-family:"Times New Roman","serif"'>:</span></b></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
-style='font-family:"Times New Roman","serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>i)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'>Loading data
-to the panel: Open the data file from File in the menu bar. Select loaded data
-from a plot panel by highlighting that it until its color turns yellow. Then
-right click on that the data and selects the option Compute Invariant. The
-application automatically computes the invariant value if the data loaded is
-valid.</span></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
-style='font-family:"Times New Roman","serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>ii)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'>To subtract a
-background or/and to rescale the data, type the values in Customized Input
-box.  </span></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
-style='font-family:"Times New Roman","serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;
-</span>iii)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'>If you want
-to calculate the volume fraction and the specific surface area, type the
-optional inputs in the customized input box, and then press Compute button.</span></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
-style='font-family:"Times New Roman","serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;
-</span>iv)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'>The invariant
-can also be calculated including the outside of the data Q range:  To include
-the lower Q and/or the higher Q range, check in the enable extrapolation check
-box in Extrapolation box. If the power low is chosen, the power (exponent)
-can be either held or fitted by checking the corresponding radio button.  The
-Npts that is being used for the extrapolation can be specified.</span></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
-style='font-family:"Times New Roman","serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span>v)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'>If the
-invariant calculated from the extrapolated region is too large, it will be warn
-in red at the top of the panel, which means that your data is not proper to
-calculate the invariant.</span></p>
-
-<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
-style='font-family:"Times New Roman","serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;
-</span>vi)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'>The details
-of the calculation is available by clicking the Details button in the middle
-of the panel. </span></p>
-
-<p class=MsoNormal align=center style='text-align:center;line-height:normal'><span
-style='font-family:"Times New Roman","serif"'><img border=0 width=572
-height=449 id="Object 4" src="image005.gif"></span></p>
-
-<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-</div>
-
-</body>
-
-</html>
Index: cs/pre-sphinx-docs/kiessig_calculator_help_v0.html
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+++ 	(revision )
@@ -1,27 +1,0 @@
-<html>
-<body>
-<h4>Kiessig Thickness Calculator</h4>
-<ul>
-<li><a href="#Description">Description:</a></li>
-<li><a href="#HowTo">HowTo?</a></li>
-
-</ul>
-<h5><a name="Description">Description</a></h5>
-<p>
-This tool is to approximately estimate the thickness of a layer
- or the diameter of particles from the Kiessig fringe in 
- SAS/NR data, and uses the Kiessig relation;
- thickness = 2*Pi/fringe_width.
-  
-</p>
-
-
-<h5><a name="HowTo">HowTo?</a></h5>
-<p>
-To get a rough thickness or particle size, just type the Kiessig fringe width (in the 1/A unit)
- and click on the 'Compute' button. Then the output value will be show up in the 'Thickness' text box.</p>
-
-
-</body>
-
-</html>
Index: cs/pre-sphinx-docs/load_data_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/load_data_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,13 +1,0 @@
-<html>
-<body>
-
-<p>
-<h4>Loading Data File/Folder</h4>
-From Menu go to <b>Data</b> -><b>Load Data File(or Folder)</b>. Select a file/folder from the menu bar and click
-on Open button.
-Data contained in the file will be displayed. To cancel the loading click on <b>cancel</b>.
-In case a file can not be loaded, an error message will be displayed on the statusbar.
-</p>
-
-</body>
-</html>
Index: cs/pre-sphinx-docs/load_image_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/load_image_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,48 +1,0 @@
-<body>
-<h4>Image Viewer</h4>
-<ul>
-<li><a href="#Description">Description</a></li>
-<li><a href="#HowTo">HowTo?</a></li>
-</ul>
-<h5><a name="Description">Description</a></h5>
-<p>
-This tool is to load image files (in the format of png, bmp, gif, jpg, or tif) 
-and to display it in the x-y coordinate (against the pixel number). The displayed plot then
- can be saved, printed, and copied. 
- The plot can also be resized by dragging the corner of the panel. 
-</p>
-
-
-<h5><a name="HowTo">HowTo?</a></h5>
-<p>
-1. Select 'Image Viewer' under 'Tool' menu in the menubar.
-</p>
-<p>
-2. Select a file type from the drop-box at the bottom of the file dialog panel, 
-choose a file of interest, and then click the 'Open' button (See Picture below).</p>
-<p>
-<img src="load_image.bmp">
-</p>
-<p>
-3. If the loading is successful, the image will be displayed in the x-y coordinate. 
-The file name will be shown in the title bar (See Picture below). 
-</p>
-<p>
-4. Some options such as Saving, printing, and copying are available from the menubar, 
-or in the popup-menu by right-mouse-clicking anywhere in the plot (See Picture below).
-</p>
-<p><img src="pic_plot.bmp">
-</p>
-<p>
-5. If the image is taken from a 2D detector, it can be converted to our 2D data where 
-the z values are computed by the Eq. z = 0.299R + 0.587G + 0.114B unless the picture file
-is formatted in an 8 bit Grey-Scale tif. In the "Convert to Data" dialog, users set 
-the proper values in the text boxes and then click the OK button to close and to send the data generated to the Data
- Explorer in the SasView main window. The "Cancel" button will just close the dialog 
- (See Picture below).
-</p>
-
-<p><img src="pic_convert.bmp">
-</p>
-<br>
-</body>
Index: cs/pre-sphinx-docs/model_editor_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/model_editor_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,58 +1,0 @@
-<html>
-<body>
-<h4>Edit Custom Model</h4>
-<ul>
-<li><a href="#description">Description</a></li>
-<li><a href="#new">New</a></li>
-<li><a href="#sum">Sum|Multi(p1,p2)</a></li>
-<li><a href="#advanced">Advanced</a></li>
-<li><a href="#delete">Delete</a></li>
-
-</ul>
-<h5><a name="description">Description</a></h5>
-<p>
-This menu (Fitting/Edit Custom Model in the menu bar) interface is to provide you an easy way to write your own custom models.
-The changes in a model function are effective after it is re-selected from the combo-box menu. 
-</p>
-<br/>
-<img src="edit_model_menu.bmp"/>
-<br/>
-<br/>
-<h5><a name="new">New</a></h5>
-<p>
-This option is used to make a new model. 
-A model code generated by this option can be viewed and further modified by the 'Advanced' option below.
-</p>
-<br/>
-<img src="new_model.bmp"/>
-<br/>
-<br/>
-<h5><a name="sum">Sum|Multi(p1,p2)</a></h5>
-<p>
-This option create a new sum (or multiplication) model. Fill up the (sum model function) name and the description. 
-The description will show up on details button in the application.
-Then select the p1 or p2 model for the sum/multi model, 
-select an operator as necessary and click the Apply button for activation. 
-Hit the 'Close' button when it's done.
-</p>
-<br/>
-<img src="sum_model.bmp"/>
-<br/>
-<br/>
-<h5><a name="advanced">Advanced</a></h5>
-<p>
-The menu option shows all the files in the plugin_models folder. 
-You can edit, modify, and save it.
-It is recommended to modify only the lines with arrow (## &#60-----). 
-In the end of edit, 'Compile' and 'Run' from the menu bar to activate or to see the model working properly.
-</p>
-
-
-<h5><a name="delete">Delete</a></h5>
-<p>
-The menu option is to delete the custom models. Just select the file name to delete.
-</p>
-
-</body>
-
-</html>
Index: cs/pre-sphinx-docs/model_use_help_v0.html
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+++ 	(revision )
@@ -1,37 +1,0 @@
-<html>
-<body>
-
-<h4>Model Selection</h4>
-<ul>
-<li><a href="#Model type">Model type</a></li>
-<li><a href="#Visualize">Change Model's parameters</a></li>
-<li><a href="#Plugin"> Write your own model</a></li>
-</ul>
-
-<h5><a name="Model types">Model type</a></h5>
-<p> Models are grouped into three classes:
-	<ul>
-	<li><b> Shapes</b>: Regular  geometric shapes</li>
-	<li><b> Shape- Independent</b></li>
-	<li><b> Customized Models</b> : models written by the user</li>
-	<li><b> Structure Factor</b> </li>
-	</ul>
-</p>
-
-<h5><a name="Visualize">Change Model's parameters</a></h5>
-<p>
-	To visualize model in a different window, from menu click on <b>Model</b>.Select
-	a type of model and then the name of your model.A new window will appear with the plot 
-	of your model with default values. Change model's parameters on <b> model view</b> tab
-	and view the plotted model with its new parameters. 
-</p>
-
-<h5><a name="Plugin"> Write your own model</a></h5>
-<p>The custom model editors are provided from 'Fitting' menu in the menu bar. 
-	See 'Custom model editor' in the side menu on left.
-	Advanced users can write your own model and save it (in .py format) into <b>plugin_models</b> directory
-	in .sasview of your home directory (eg., username\.sasview>\plugin_models). You plugin
-	model will be added into "<>Customized Models</>"  on the next model selection.
-</p>
-</body>
-</html>
Index: cs/pre-sphinx-docs/pd_help_v0.html
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--- docs/pre-sphinx-docs/pd_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,182 +1,0 @@
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
-<meta name=Generator content="Microsoft Word 12 (filtered)">
-
-</head>
-
-<body lang=EN-US>
-
-<div class=WordSection1>
-
-<p class=MsoNormal><h3><span style='font-family:"Times New Roman","serif"'>Polydisperisty
-and Angular Distributions</span></h3></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>Calculates
-the form factor for a polydisperse and/or angular population of particles with
-uniform scattering length density. The resultant form factor is normalized by
-the average particle volume such that P(q) = scale*&lt;F*F&gt;/Vol + bkg, where
-F is the scattering amplitude and the &lt; &gt; denote an average over the size
-distribution.  Users should use PD (polydispersity: this definition is different from the typical definition in polymer science) 
-for a size distribution and Sigma for an
-angular distribution (see below).</span></p>
-<p> Note that this computation is very time intensive thus applying polydispersion/angular distrubtion for 
-more than one paramters or increasing Npts values might need extensive patience to complete the computation. Also
-note that even though it is time consuming, it is safer to have larger values of Npts and Nsigmas.</p>
-
-<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt'><span
-style='font-family:"Times New Roman","serif"'>The following five distribution
-functions are provided;</span></p>
-<ul>
-<li><a href="#Rectangular">Rectangular distribution</a></li>
-<li><a href="#Array">Array distribution</a></li>
-<li><a href="#Gaussian">Gaussian distribution</a></li>
-<li><a href="#Lognormal">Lognormal distribution</a></li>
-<li><a href="#Schulz">Schulz distribution</a></li>
-</ul>
-<p>&nbsp;</p>
-<p><a name="Rectangular"><h4>Rectangular distribution</a></h4></p>
-<p><img src="img/pd_image001.png"></p>
-<p>&nbsp;</p>
-<p>The x<sub>mean</sub> is the mean
-of the distribution, w is the half-width, and Norm is a normalization factor
-which is determined during the numerical calculation. Note that the Sigma and
-the half width <i>w</i> are different.</p>
-<p>The standard deviation is </p>
-<p><img src="img/pd_image002.png"></p>
-<p>&nbsp;</p>
-<p>The PD (polydispersity) is </p>
-<p><img src="img/pd_image003.png"></p>
-<p>&nbsp;</p>
-<p><img width=511 height=270
-id="Picture 1" src="img/pd_image004.jpg" alt=flat.gif></p>
-<p>&nbsp;</p>
-<p>&nbsp;</p>
-<p><a name="Array"><h4>Array distribution</h4></a></p>
-
-<p>This distribution is to be given
-by users as a txt file where the array should be defined by two columns in the
-order of x and f(x) values. The f(x) will be normalized by SasView during the
-computation.</p>
-
-<p>Example of an array in the file;</p>
-
-<p>30        0.1</p>
-
-<p>32        0.3</p>
-
-<p>35        0.4</p>
-
-<p>36        0.5</p>
-
-<p>37        0.6</p>
-
-<p>39        0.7</p>
-
-<p>41        0.9</p>
-
-<p'>&nbsp;</p>
-
-<p>We use only these array values in
-the computation, therefore the mean value given in the control panel, for
-example radius = 60, will be ignored.</p>
-<p>&nbsp;</p>
-
-
-<p><a name="Gaussian"><h4>Gaussian distribution</h4></a></p>
-<p>&nbsp;</p>
-
-<p><img src="img/pd_image005.png"></p>
-
-<p>&nbsp;</p>
-
-<p>The x<sub>mean</sub> is the mean
-of the distribution and Norm is a normalization factor which is determined
-during the numerical calculation.</p>
-
-<p>&nbsp;</p>
-
-<p>The PD (polydispersity) is </p>
-
-<p><img src="img/pd_image003.png"></p>
-
-<p>&nbsp;</p>
-
-<p><img width=518 height=275
-id="Picture 2" src="img/pd_image006.jpg" alt=gauss.gif></p>
-
-<p>&nbsp;</p>
-
-<p><a name="Lognormal"><h4>Lognormal distribution</h4></a></p>
-
-<p>&nbsp;</p>
-
-<p><img src="img/pd_image007.png"></p>
-
-<p>&nbsp;</p>
-
-<p>The &#956; = ln(x<sub>med</sub>),  x<sub>med</sub>
-is the median value of the distribution, and Norm is a normalization factor
-which will be determined during the numerical calculation. The median value is
-the value given in the size parameter in the control panel, for example,
-radius = 60.</p>
-
-<p >&nbsp;</p>
-
-<p>The PD (polydispersity) is given
-by &#963;,</p>
-
-<p><img src="img/pd_image008.png"></p>
-
-<p>&nbsp;</p>
-
-<p>For the angular distribution,</p>
-
-<p><img src="img/pd_image009.png"></p>
-
-<p>&nbsp;</p>
-
-<p>The mean value is given by x<sub>mean</sub>
-=exp(&#956;+p<sup>2</sup>/2).</p>
-
-<p>The peak value is given by x<sub>peak</sub>=exp(&#956;-p<sup>2</sup>).</span></p>
-
-<p>&nbsp;</p>
-
-<p><img width=450 height=239
-id="Picture 7" src="img/pd_image010.jpg" alt=lognormal.gif></p>
-
-<p>&nbsp;</p>
-
-<p>This distribution function
-spreads more and the peak shifts to the left as the p increases, requiring
-higher values of Nsigmas and Npts.</p>
-
-<p>&nbsp;</p>
-
-<p><a name="Schulz"><h4>Schulz distribution</h4></a></p>
-
-<p>&nbsp;</p>
-
-<p><img src="img/pd_image011.png"></p>
-
-<p>&nbsp;</p>
-
-<p>The x<sub>mean</sub> is the mean
-of the distribution and Norm is a normalization factor which is determined
-during the numerical calculation. </p>
-
-<p>The z = 1/p<sup>2</sup>  1.</p>
-<p>&nbsp;</p>
-
-<p>The PD (polydispersity) is </p>
-<p'><img src="img/pd_image012.png"></p>
-<p>Note that the higher PD (polydispersity)
- might need higher values of Npts and Nsigmas. For example, at PD = 0.7 and  radisus = 60 A, 
- Npts >= 160, and Nsigmas >= 15 at least.</p>
- <p/>
-<p><img width=438 height=232
-id="Picture 4" src="img/pd_image013.jpg" alt=schulz.gif></p>
-
-</div>
-<br>
-</body>
Index: cs/pre-sphinx-docs/polar_mag_help_v0.html
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@@ -1,102 +1,0 @@
-<body>
-<br>
-<p><a name="magnetic"></a><strong><span style="font-size: 14pt;"> Polarization and Magnetic Scattering</span></strong></p>
-<br>
-<br>
-The magnetic scattering is implemented in five (2D) models, SphereModel, CoreShellModel, 
-CoreMultiShellModel, CylinderModel, and ParallelepipedModel. 
-In general, the scattering length density (SLD) in each regions where the SLD (=&#946;)
- is uniform, is a combination of the nuclear and magnetic SLDs 
-and depends on the spin states of the neutrons as follows:
-<br>
-<br>
-For magnetic scattering, only the magnetization component, <b>M</b><sub>perp</sub>, 
-perpendicular to the scattering vector <b>Q</b> contributes to the the magnetic 
-scattering length. (Figure below).
-<p>
-<img src="img/mag_vector.bmp"/>
-</p>
-<br>
-The magnetic scattering length density is then
-<p>
-<img src="img/dm_eq.gif"/>
-</p>
-<br>
-where &#947; = -1.913 the gyromagnetic ratio,  	&#956;<sub>B</sub> is the Bohr magneton, 
-r<sub>0</sub> is the classical radius of electron, 
-and <b>&#963;</b> is the Pauli spin.
-<br>
-For polarized neutron, the magnetic scattering is depending on the spin states.
-Let's consider that the incident neutrons are polarized parallel (+)/anti-parallel 
-(&#8211;) to the x' axis (See both Figures above).
-The possible out-coming states then are + and - states for both incident states.
-<br>
- - Non-spin-flips:  	(+ +) and  	(- -)
-<br>
- - Spin-flips:  	(+ -) and  	(- +)
-<br>
-<p>
-<img src="img/M_angles_pic.bmp"/>
-</p>
-<br>
-<br>
-Now, let's assume that the angles of the <b>Q</b> vector and the spin-axis (x') against x-axis 
-are &#966; and  &#952;<sub>up</sub>, respectively (See Figure above).
-Then, depending upon the polarization (spin) state of neutrons, the scattering length
-densities , including the nuclear scattering length density (&#946; <sub>N</sub>) are given as, for non-spin-flips,
-<p>
-<img src="img/sld1.gif"/>
-</p>
-<br>
-<br>
-for spin-flips,
-<p>
-<img src="img/sld2.gif"/>
-</p>
-<br>
-<br>
-where
-<p>
-<img src="img/mxp.gif"/>
-</p>
-<p>
-<img src="img/myp.gif"/>
-</p>
-<p>
-<img src="img/mzp.gif"/>
-</p>
-<p>
-<img src="img/mqx.gif"/>
-</p>
-<p>
-<img src="img/mqy.gif"/>
-</p>
-<br>
-<br>
-Here, the M<sub>0x</sub>, M<sub>0y</sub> and M<sub>0z</sub> are the x, y and z 
-components of the magnetization vector given in the xyz lab frame. 
-The angles of the magnetization, &#952;<sub>M</sub> and &#966;<sub>M</sub> as defined in the 
-Figure (above),
-<p>
-<img src="img/m0x_eq.gif"/>
-</p>
-<p>
-<img src="img/m0y_eq.gif"/>
-</p>
-<p>
-<img src="img/m0z_eq.gif"/>
-</p>
-<br>
-<p>
-The user input parameters are M0_sld = D<sub>M</sub>M<sub>0</sub>, Up_theta = &#952;<sub>up</sub>, 
-M_theta = &#952;<sub>M</sub>, and M_phi = &#966;<sub>M</sub>.
-The 'Up_frac_i' and 'Up_frac_f' are the ratio, (spin up) /(spin up + spin down) neutrons 
-before the sample and at the analyzer, respectively.
-</p>
-<br>
-*Note: The values of the 'Up_frac_i' and 'Up_frac_f' must be in the range between 0 and 1.
-</body>
-
-
-
-
Index: cs/pre-sphinx-docs/pycrust_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/pycrust_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,36 +1,0 @@
-<html>
-<body>
-<h4>Python (PyCrust) Shell</h4>
-<ul>
-<li><a href="#description">Description</a></li>
-<li><a href="#example">Example</a></li>
-</ul>
-<h5><a name="description">Description</a></h5>
-<p>
-This is a python shell (PyCrust) provided with WxPython. 
-An editing notebook will show up when a Python file is loaded from the 'New' or 'Open' menu.
-The 'Run' menu is added for the editor to be able to compile and run the python code. 
-</p>
-<br/>
-For the details about the Python, visit the website, http://docs.python.org/tutorial/.
-<br/>
-The numpy, scipy, matplotlib, etc. are shipped with the SanView. 
-<br/>
-However, some functionalities of those packages may or may not work. 
-<br/>
-The PyCrust includes its own Help menu in the shell window.
-<br/>
-Note: Help(), Credits(), ... do not work on MAC.
-<br/>
-
-<p>
-<h5><a name="example">Example</a></h5>
-</p>
-<p>
-An example from the matplotlib gallery: 
-</p> 
-<img src="pycrust_example.bmp"/>
-
-</body>
-
-</html>
Index: cs/pre-sphinx-docs/report_template_v0.html
===================================================================
--- docs/pre-sphinx-docs/report_template_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,201 +1,0 @@
-<html>
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
-<meta name=Generator >
-</head>
-<body lang=EN-US>
-<div class=WordSection1>
-<font size='4'>
-<p class=MsoNormal><b><span >%s</span></b></p>
-<p class=MsoNormal><span >%s</span></p>
-</font>
-<font size='3'>
-<p class=MsoNormal><b><span > Input
-parameters</span></b></p>
-<table class=MsoTableGrid border=1 cellspacing=0 cellpadding=0>
- <tr>
-  <td width=170 valign=top>
-  <p class=MsoNormal > Parameter</p>
-  </td>
-  <td width=213 valign=top >
-  <p class=MsoNormal > Value</p>
-  </td>
-  <td width=170 valign=top >
-  <p class=MsoNormal > Unit</p>
-  </td>
- </tr>
- <tr>
-  <td width=170 valign=top >
-  <p class=MsoNormal > scale</p>
-  </td>
-  <td width=213 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
-  <td width=170 valign=top >&nbsp;</p>
-  </td>
- </tr>
- <tr>
-  <td width=170 valign=top >
-  <p class=MsoNormal > porod constant</p>
-  </td>
-  <td width=213 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
-  <td width=170 valign=top >&nbsp;</p>
-  </td>
- </tr>
- <tr>
-  <td width=170 valign=top>
-  <p class=MsoNormal > background</p>
-  </td>
-  <td width=170 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
-  <td width=170 valign=top ><span > cm<sup>-1</sup></span></p>
-  </td>
- </tr>
- <tr>
-  <td width=170 valign=top >
-  <p class=MsoNormal > contrast</p>
-  </td>
-  <td width=213 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
-  <td width=170 valign=top >
-  <p class=MsoNormal ><span > A<sup>-2</sup></span></p>
-  </td>
- </tr>
-</table>
-<p class=MsoNormal><b><span > Extrapolation</span></b></p>
-<table class=MsoTableGrid border=1 cellspacing=0 cellpadding=0>
- <tr>
-  <td width=213 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
-  <td width=213 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
- </tr>
- <tr>
-  <td width=213 valign=top >
-  <p class=MsoNormal > npts low = %s</p>
-  </td>
-  <td width=213 valign=top > npts high = %s</p>
-  </td>
- </tr>
- <tr>
-  <td width=213 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
-  <td width=213 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
- </tr>
-</table>
-<p class=MsoNormal><b><span > Outputs</span></b></p>
-<table class=MsoTableGrid border=1 cellspacing=0 cellpadding=0>
- <tr>
-  <td width=110 valign=top >
-  <p class=MsoNormal s> Parameter</p>
-  </td>
-  <td width=150 valign=top >
-  <p class=MsoNormal >&nbsp;</p>
-  </td>
-  <td width=255 valign=top >
-  <p class=MsoNormal > Value</p>
-  </td>
-  <td width=65 valign=top >
-  <p class=MsoNormal > Unit</p>
-  </td>
- </tr>
- <tr>
-  <td width=110 rowspan=4 >
-  <p class=MsoNormal > invariant (Q<sup>*</sup>)</p>
-  </td>
-  <td width=150 valign=top >
-  <p class=MsoNormal > low Q extrapolation</p>
-  </td>
-  <td width=230 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
-  <td width=65 valign=top >
-  <p class=MsoNormal > (cmA)<sup>-1</sup></p>
-  </td>
- </tr>
- <tr>
-  <td width=150 valign=top >
-  <p class=MsoNormal > data</p>
-  </td>
-  <td width=230 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
-  <td width=65 valign=top >
-  <p class=MsoNormal > (cmA)<sup>-1</sup></p>
-  </td>
- </tr>
- <tr>
-  <td width=150 valign=top >
-  <p class=MsoNormal > high Q extrapolation</p>
-  </td>
-  <td width=230 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
-  <td width=65 valign=top >
-  <p class=MsoNormal > (cmA)<sup>-1</sup></p>
-  </td>
- </tr>
- <tr>
-  <td width=150 valign=top >
-  <p class=MsoNormal > total</p>
-  </td>
-  <td width=230 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
-  <td width=65 valign=top >
-  <p class=MsoNormal > (cmA)<sup>-1</sup></p>
-  </td>
- </tr>
- <tr>
-  <td width=110 valign=top >
-  <p class=MsoNormal > volume fraction</p>
-  </td>
-  <td width=150 valign=top >
-  <p class=MsoNormal >&nbsp;</p>
-  </td>
-  <td width=230 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
-  <td width=65 valign=top >
-  <p class=MsoNormal >&nbsp;</p>
-  </td>
- </tr>
- <tr>
-  <td width=110 valign=top >
-  <p class=MsoNormal > specific surface</p>
-  </td>
-  <td width=150 valign=top >
-  <p class=MsoNormal >&nbsp;</p>
-  </td>
-  <td width=230 valign=top >
-  <p class=MsoNormal > %s</p>
-  </td>
-  <td width=65 valign=top >
-  <p class=MsoNormal >&nbsp;</p>
-  </td>
- </tr>
-</table>
-</font>
-<p class=MsoNormal>&nbsp;</p>
-<font size=4>
-<br><b><span > Plot</span></b>
-<center>
-<br>Invariant Computation
-<br>Data: "%s"
-<img src="%s" height=400 width=550>
-</center>
-</font>
-</div>
-
-</body>
-
-</html>
Index: cs/pre-sphinx-docs/resolution_calculator_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/resolution_calculator_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,83 +1,0 @@
-<html>
-<body>
-<h4>SAS Q Resolution Estimator</h4>
-<ul>
-<li><a href="#Description">Description</a></li>
-<li><a href="#HowTo">HowTo?</a></li>
-<li><a href="#Theory">Theory</a></li>
-<li><a href="#References">References</a></li>
-</ul>
-<h5><a name="Description">Description</a></h5>
-<p>
-This tool is to approximately estimate the resolution of Q based on the
-SAS instrumental parameter values assuming that the detector is flat 
-and vertical to the incident beam direction.
-</p>
-
-
-<h5><a name="HowTo">HowTo?</a></h5>
-<p>
-1. Select the source and source type (Monochromatic or TOF). 
-Note that the computational difference between the sources is 
-only the gravitational contribution due to the mass.</p>
-<p>
-2. Change the default values of the instrumental parameters as desired.</p>
-<p>
-3. The input formats of wavelength and its spread (=FWHM/wavelength) depend on the source type.
-<li>For monochromatic wave, the inputs are just one values as shown with the defaults.</li>
-<li>For TOF, the min and max values should be separated by "-" to describe the wavelength band range.
-Optionally, the input of the wavelength (NOT of the wavelength spread) 
-could be extended by adding "; ##" where the ## is the number 
-of the bins for the numerical integration.
-Otherwise, the default value "10" bins will be used. 
-The same number of bins will be used for the corresponding wavelength spread in either cases.</li>
-</p>
-<p>4. For TOF, the default wavelength spectrum is flat. 
-The custom spectrum file (with 2 column text: wavelength(A) vs. intensity) 
-can also be loaded by selecting "Add new" in the combobox.</p>
-<p>
-5. Once set all the input values, click the compute button. 
-Depending on computation loads the calculation time will vary.
-</p>
-<p> 
-6. 1D and 2D dQ will be displayed in the text-box at the bottom of 
-the panel. Two dimensional resolution weight distribution 
-(2D elliptical Gaussian function) will also be 
-displayed in the plot panel even if the Q inputs are outside 
-of the detector limit.
-The red lines indicate the limits of the detector (if a green lines appear (for TOF), 
-it indicates the limits of the maximum q range for the largest wavelength 
-due to the size of the detector). Note that the effect from the beam block is ignored, 
-so in the small q region near the beam block [ie., q < 2*pi*(beam block diameter) / (sample to detector distance) / lamda_min] 
-the variance is slightly under estimated.</p>
-<p>7. The summary can be accessed by clicking the 'light-bulb' icon 
-at the bottom of the SasView main window.
-</p>
-<p><img src="resolution_tutor.gif">
-</p>
-<h5><a name="Theory">Theory</a></h5>
-<p>
-The scattering wave transfer vector is by definition,
-<img src="q.gif">
-</p>
-<p>In the limit of the small angle, the variance of q in the first order approximation is</p>
-<p>
-<img src="sigma_q.gif">
-</p>
-In summary, the geometric and gravitational contributions depending on the shape of each factors can be expressed  
-as shown the table.</p>
-<p>
-<img src="sigma_table.gif">
-</p>
-<p>
-Finally, we use a Gaussian function to describe the 2D weighting distribution of the uncertainty in q.
-</p>
-<p/>
-<h5><a name="References">References</a></h5>
-<p>
-D.F.R. Mildner and J.M. Carpenter, J. Appl. Cryst. 17, 249-256 (1984).</p>
-<p>
-D.F.R. Mildner, J.M. Carpenter and D.L. Worcester, J. Appl. Cryst. 19, 311-319 (1986).</p>
-</body>
-
-</html>
Index: cs/pre-sphinx-docs/simultaneous_fit_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/simultaneous_fit_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,38 +1,0 @@
-<html>
-<body>
-
-<h4>Simultaneous Fit</h4>
-<p>
-	This fitting option enables to set a number of the constraints between the parameters of fitting(s).
-	It requires one or more FitPages with a data and a model set for the fitting, 
-	and performs multiple fittings given by the FitPage(s).
-	The Complex (ParkMC) FitEngine will be used automatically.
-</p>
-<ul>
-<li><a href="#noconstraint">Simultaneous Fit without constraint</a></li>
-<li><a href="#constraint">Simultaneous Fit with constraint</a></li>
-</ul>
-
-<h5><a name="noconstraint">Simultaneous Fit without constraint</a></h5>
-<p> 
-	Assuming some FitPages are already set up, check the checkboxes of the model_data rows to fit.
-	And click the 'Fit' button. 
-	The results will return to each FitPages. 
-	<br/>Note that the chi2/Npts returned is the sum of the chi2/Npts of each fits. 
-	If one needs the chi2 value only for a page, click the 'Compute' button in the FitPage to recalculate.
-	
-</p>
-
-<h5><a name="constraint">Simultaneous Fit with constraint</a></h5>
-<p>
-	Enter constraint in the text control next to  <b>constraint fit</b> button.
-	Constraint should be of type model1 parameter name = f(model2 parameter name)for example, M0.radius=2*M1.radius.
-	Many constraints can be entered for a single fit.Each of them should be separated 
-	by a newline charater or ";"
-	The easy setup can generate many constraint inputs easily when the selected two models are the same type.
-	<br/>Note that the chi2/Npts returned is the sum of the chi2/Npts of each fits. 
-	If one needs the chi2 value only for one fit, click the 'Compute' button in the FitPage to recalculate.
-</p>
-
-</body>
-</html>
Index: cs/pre-sphinx-docs/single_fit_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/single_fit_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,27 +1,0 @@
-<html>
-<body>
-
-<h4>Single Fit</h4>
-<ul>
-<li><a href="#fitpage">Single Fit</a></li>
-
-</ul>
-
-<h5><a name="fitpage">Single Fit</a></h5>
-<p> 
-	One of two fit-engines can be chosen from the Fitting menu bar. The Simple Fit-engine uses Scipy's leasqr 
-	and the Complex Fit-Engine is a custom optimizer that provides a better chance 
-	to find the global minimum of the chi2 but that requires longer computation time.
-	In order to set a data to a control panel (FitPage), see the "DataLoader Help".
-	Once a data set to the FiPage, select a model from the combo box. 
-	The default parameters of the model will be display. Set initial parameters if need.
-	Check and uncheck parameters to fit/fix. Click the <b> 'Fit'</b> button.
-	When the fitting is finished, the resultant parameter values will be displayed with the errors. If a error is missing, it generally means 
-	that the corresponding parameter is not very depending on the model. The chisq/Npt_fit and the plot associated
-	with the fit operation will be also updated.
-	
-</p>
-
-
-</body>
-</html>
Index: cs/pre-sphinx-docs/sld_calculator_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/sld_calculator_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,42 +1,0 @@
-<html>
-<body>
-<h4>Scattering Length Density (SLD) Calculator</h4>
-<ul>
-<li><a href="#SLD_calculator">Description</a></li>
-<li><a href="#How to use">How to format the compound name?</a></li>
-</ul>
-<h5><a name="SLD_calculator">Description</a></h5>
-<p>
-The neutron scattering length density is defined as: <br> 
-SLD = (b_c1 +b_c2+...+b_cn )/Vm  <br> where b_ci is the bound coherent scattering length of ith of 
-n atoms in a molecule with the molecular volume Vm
-</p>
-
-
-<h5><a name="How to use">How to format the compound name?</a></h5>
-<p>
-To calculate scattering length densities enter a compound and
-a mass density and click "Calculate". Enter a wavelength value is optional and its default 
-value will be 6.0A.
-</p> 
-<p>
-<ul>
-<li>Formula strings consist of counts and atoms such as "CaCO3+6H2O".</li>
-<li>Groups can be separated by <b>'+'</b> or <b>space</b>, so "CaCO3 6H2O" works as well.</li>
-<li>Groups and be defined using parentheses, such as "CaCO3(H2O)6".</li>
-<li>Parentheses can nest: "(CaCO3(H2O)6)1".</li>
-<li>Isotopes are represented by index, e.g., "CaCO[18]3+6H2O".</li>
-More examples: H[1], H[2].
-<li>Counts can be integer or decimal, e.g. "CaCO3+(3HO0.5)2".</li>
-Other compositions can be calculated as well,<br>
-for example a 70-30 mixture of H2O/D2O can be written as <b>H14O7+ D6O3</b><br>
-or more simply <b>H7D3O5 <\b>(i.e. 7 hydrogens, 3 deuteriums, and 5 oxygens)<br>
-and the mass density calculated based on the percentages of H and D. 
-Type for example "C[13]6 H[2]12 O[18]6" for C(13)6H(2)12O(18)6 (6 Carbon-13 atoms, 12 deuterium atoms, and 6 Oxygen-18 atoms) 
-
-</ul>
-</p>
-
-</body>
-
-</html>
Index: cs/pre-sphinx-docs/slit_calculator_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/slit_calculator_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,33 +1,0 @@
-<html>
-<body>
-<h4>Slit Size Calculator</h4>
-<ul>
-<li><a href="#Description">Description:</a></li>
-<li><a href="#HowTo">HowTo?</a></li>
-<li><a href="#Note">Note</a></li>
-</ul>
-<h5><a name="Description">Description</a></h5>
-<p>
-This tool is for X-ray users to calculate the slit size (FWHM/2) 
-for smearing  based on their half beam profile data (SAXSess). 
-</p>
-
-
-<h5><a name="HowTo">HowTo?</a></h5>
-<p>
-To calculate the slit size (FWHM/2), just load the beam profile data using the browse button. </p>
-<p>
-Once a data is loaded, the slit size will be computed and show up in the text box. </p>
-<p>
-Because the unit is not specified in the data file, we do not convert it into 1/A so that users are responsible for converting the unit.
-</p>
-
-<h5><a name="Note">Note: </a></h5>
-This slit size calculator is working only for a beam profile data produced by 'SAXSess'. 
-
-<p>
-To see the file format, check the file, 'beam profile.DAT', in the 'test' folder of SasView. 
-</p>
-</body>
-
-</html>
Index: cs/pre-sphinx-docs/smear_computation_v0.html
===================================================================
--- docs/pre-sphinx-docs/smear_computation_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,283 +1,0 @@
-
-<head>
-<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
-<meta name=Generator content="Microsoft Word 12 (filtered)">
-
-</head>
-
-<body lang=EN-US>
-
-<div class=WordSection1>
-
-<p class=MsoNormal><span style='font-size:16.0pt;line-height:115%;font-family:
-"Times New Roman","serif"'><h4>Smear Computation </h4></span></p>
-
-
-<ul style='margin-top:0in' type=disc>
- <li class=MsoNormal style='line-height:115%'><a href="#Slit Smear"><b>Slit Smear</b></a>
-     </li>
- <li class=MsoNormal style='line-height:115%'><a href="#Pinhole Smear"><b>Pinhole Smear</b></a>
-	</li>
- <li class=MsoNormal style='line-height:115%'><a href="#2D Smear"><b>2D Smear</b></a> 
-	</li>
-</ul>
-
-<p class=MsoListParagraph><span style='font-size:14.0pt;line-height:115%;
-font-family:"Times New Roman","serif"'><h5><a name="Slit Smear">Slit Smear</a></h5></span></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>The sit
-smeared scattering intensity for SAS is defined by</span></p>
-
-<p class=MsoNormal><img 
-src="img/sm_image002.gif" align=left hspace=12></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>           
-                                 ---- 1)</span><br clear=all>
-<span style='font-family:"Times New Roman","serif"'>where Norm = <span
-style='position:relative;top:15.0pt'><img 
-src="img/sm_image003.gif"></span>.</span></p>
-<br>
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>The
-functions <span style='position:relative;top:6.0pt'><img 
-src="img/sm_image004.gif"></span> and <span style='position:
-relative;top:6.0pt'><img 
-src="img/sm_image005.gif"></span> refer to the slit width weighting
-function and the slit height weighting determined at the q point, respectively.
- Here, we assumes that the weighting function is described by a rectangular
-function, i.e.,</span></p>
-
-<p class=MsoNormal><span style='position:relative;top:7.0pt'><img 
- src="img/sm_image006.gif">                                                                                                       
-  </span><span style='font-family:"Times New Roman","serif";position:relative;
-top:7.0pt'> ---- 2)</span></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>and </span></p>
-
-<p class=MsoNormal><span style='position:relative;top:7.0pt'><img 
- src="img/sm_image007.gif"></span>,                                                                              
-                         <span style='font-family:"Times New Roman","serif"'> ---- 3)</span></p>
-
-<p>so that <img 
-src="img/sm_image008.gif"> <img src="img/sm_image009.gif">  for <img 
-src="img/sm_image010.gif"> and <i>u</i>. The <img src="img/sm_image011.gif"> 
- and <img src="img/sm_image012.gif">  stand for the slit height (FWHM/2) and the slit
-width (FWHM/2) in the q space. Now the integral of Eq. (1) is simplified to</span></p>
-
-<p class=MsoNormal><img 
-src="img/sm_image013.gif" align=left hspace=12><span
-style='font-family:"Times New Roman","serif"'>                                                  
-          ---- 4)</span></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif";
-position:relative;top:20.0pt'>&nbsp;</span></p>
-
-<p class=MsoListParagraphCxSpFirst style='margin-left:0in'><b><span
-style='font-family:"Times New Roman","serif"'>Numerical Implementation of Eq.
-(4) </span></b></p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in;text-indent:-.25in'><span
-style='font-family:"Times New Roman","serif"'>1)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'>For </span><span
-style='position:relative;top:6.0pt'><img 
-src="img/sm_image012.gif"></span>= 0  <span style='font-family:
-"Times New Roman","serif"'>and </span><span style='position:relative;
-top:6.0pt'><img src="img/sm_image011.gif"></span> =
-<span style='font-family:"Times New Roman","serif"'>constant:</span></p>
-
-<p>
-<img src="img/sm_image016.gif"></p>
-
-<p> For discrete q values, at the q
-values from the data points and at the q values extended up to  q<sub>N</sub>=
-q<sub>i</sub> +  <img src="img/sm_image011.gif"> , the smeared intensity can be
-calculated approximately, </p>
-
-<p><img 
-src="img/sm_image017.gif">.                                                           
- ---- 5)</p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
-style='position:relative;top:7.0pt'><img 
-src="img/sm_image018.gif"></span> <span style='font-family:
-"Times New Roman","serif"'>= 0 for <i>I<sub>s</sub></i> in</span> <i><span
-style='font-family:"Times New Roman","serif"'>j &lt; i</span></i><span
-style='font-family:"Times New Roman","serif"'> or<i> j&gt;N-1</i>.</span></p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
-style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in;text-indent:-.25in'><span
-style='font-family:"Times New Roman","serif"'>2)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'>For  </span><span
-style='position:relative;top:6.0pt'><img 
-src="img/sm_image012.gif"></span>= <span style='font-family:
-"Times New Roman","serif"'>constant </span> <span style='font-family:"Times New Roman","serif"'>and
-</span><span style='position:relative;top:6.0pt'><img 
-src="img/sm_image011.gif"></span> = <span style='font-family:
-"Times New Roman","serif"'>0:</span></p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
-style='font-family:"Times New Roman","serif"'>Similarly to 1), we get</span></p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'>
-<img src="img/sm_image019.gif">                                                                                        
-<span style='font-family:"Times New Roman","serif"'> ---- 6)</span></p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
-style='font-family:"Times New Roman","serif"'>for  q<sub>p</sub> = q<sub>i</sub>
-- </span><span style='position:relative;top:6.0pt'><img 
-src="img/sm_image012.gif"></span><span style='font-family:
-"Times New Roman","serif"'> and</span> <span style='font-family:"Times New Roman","serif"'>q<sub>N</sub>
-= q<sub>i</sub> + </span><span style='position:relative;top:6.0pt'><img
- src="img/sm_image012.gif"></span>.  <span
-style='position:relative;top:7.0pt'><img 
-src="img/sm_image018.gif"></span> <span style='font-family:
-"Times New Roman","serif"'>= 0 for <i>I<sub>s</sub></i> in</span> <i><span
-style='font-family:"Times New Roman","serif"'>j &lt; p</span></i><span
-style='font-family:"Times New Roman","serif"'> or<i> j&gt;N-1</i>.</span></p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'>&nbsp;</p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in;text-indent:-.25in'><span
-style='font-family:"Times New Roman","serif"'>3)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-</span></span><span style='font-family:"Times New Roman","serif"'>For  </span><span
-style='position:relative;top:6.0pt'><img 
-src="img/sm_image011.gif"></span>= <span style='font-family:
-"Times New Roman","serif"'>constant </span> <span style='font-family:"Times New Roman","serif"'>and
-</span><span style='position:relative;top:6.0pt'><img 
-src="img/sm_image011.gif"></span> = <span style='font-family:
-"Times New Roman","serif"'>constant:</span></p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
-style='font-family:"Times New Roman","serif"'>This case, the best way is to
-perform the integration, Eq. (1), numerically for both slit height and width.
-However, the numerical integration is not correct enough unless given a large
-number of iteration, say at least 10000 by 10000 for each element of the matrix
-W, which will take minutes and minutes to finish the calculation for a set of
-typical SAS data. An alternative way which is correct for slit width &lt;&lt;
-slit hight, is used in the SASView:  This method is a mixed method that
-combines the method 1) with the numerical integration for the slit width.</span></p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'>
-</p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'>
-<img src="img/sm_image020.gif">    <span style='font-family:
-"Times New Roman","serif"'> ---- (7)</span></p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
-style='font-family:"Times New Roman","serif"'>for  q<sub>p</sub> = q<sub>i</sub>
-- </span><span style='position:relative;top:6.0pt'><img 
-src="img/sm_image012.gif"></span><span style='font-family:
-"Times New Roman","serif"'> and</span> <span style='font-family:"Times New Roman","serif"'>q<sub>N</sub>
-= q<sub>i</sub> + </span><span style='position:relative;top:6.0pt'><img
- src="img/sm_image012.gif"></span>.  <span
-style='position:relative;top:7.0pt'><img 
-src="img/sm_image018.gif"></span> <span style='font-family:
-"Times New Roman","serif"'>= 0 for <i>I<sub>s</sub></i> in</span> <i><span
-style='font-family:"Times New Roman","serif"'>j &lt; p</span></i><span
-style='font-family:"Times New Roman","serif"'> or<i> j&gt;N-1</i>. </span></p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
-style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
-style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<p class=MsoListParagraphCxSpLast><span style='font-size:14.0pt;line-height:
-115%;font-family:"Times New Roman","serif"'><h5><a name="Pinhole Smear">Pinhole Smear</a></h5></span></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>The
-pinhole smearing computation is done similar to the Case 2) above except that
-the weight function used was the Gaussian function, so that the Eq. 6) for this
-case becomes</span></p>
-
-<p class=MsoNormal><img src="img/sm_image021.gif"><span
-style='font-family:"Times New Roman","serif"'>   ---- (8)</span></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>For all
-the cases above, the weighting matrix <i>W</i> is calculated when the smearing
-is called at the first time, and it includes the ~ 60 q values (finely binned
-evenly) below (&gt;0) and above the q range of data in order to cover all data
-points of the smearing computation for a given model and for a given slit size.
- The <i>Norm</i> factor is found numerically with the weighting matrix, and
-considered on <i>I<sub>s</sub></i> computation.</span></p>
-
-<p class=MsoListParagraphCxSpFirst style='margin-left:.25in'><span
-style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<p class=MsoListParagraphCxSpLast><span style='font-size:14.0pt;line-height:
-115%;font-family:"Times New Roman","serif"'><h5><a name="2D Smear">2D Smear</a></h5></span></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>The
-2D smearing computation is done similar to the 1D pinhole smearing above
-except that the weight function used was the 2D elliptical Gaussian function</span></p>
-
-<p class=MsoNormal><img src="img/sm_image022.gif"><span
-style='font-family:"Times New Roman","serif"'>     ---- (9)</span></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>In Eq
-(9), x<sub>0</sub> = qcos&#952;</span><span
-style='font-family:"Times New Roman","serif"'> and y<sub>0</sub> = qsin&#952;</span><span style='font-family:"Times New Roman","serif"'>
-, and the primed axes are in the coordinate rotated by an angle &#952;</span><span style='font-family:"Times New Roman","serif"'>
-around z-axis (below) so that x<sub>0</sub> =  x<sub>0</sub>cos&#952; + </span><span style='font-family:"Times New Roman","serif"'>y<sub>0</sub>
-sin&#952;  </span><span style='font-family:
-"Times New Roman","serif"'>and y<sub>0</sub> =  -x<sub>0</sub>sin&#952; + </span><span style='font-family:"Times New Roman","serif"'>y<sub>0</sub>
-cos&#952;.</span><span style='font-family:
-"Times New Roman","serif"'> Note that the rotation angle is zero for x-y
-symmetric elliptical Gaussian distribution</span>.
-<span style='font-family:"Times New Roman","serif"'>The  A is a
-normalization factor.</span></p>
-
-<p class=MsoNormal align=center style='text-align:center'><span
-style='font-family:"Times New Roman","serif"'><img 
-id="Object 1" src="img/sm_image023.gif"></span></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>Now we
-consider a numerical integration where each bins in </span> &#920; </span><span style='font-family:"Times New Roman","serif"'>
-and R are <b>evenly </b>(this is to simplify the equation below) distributed by
-</span>&#916;&#920; </span><span style='font-family:
-"Times New Roman","serif"'>and </span> &#916;</span><span
-style='font-family:"Times New Roman","serif"'>R, respectively, and it is
-assumed that I(x, y) is constant within the bins which in turn becomes</span></p>
-
-<p class=MsoNormal><img src="img/sm_image024.gif"></p>
-
-<p class=MsoNormal>                                                                                                                                                                                <span
-style='font-family:"Times New Roman","serif"'> ---- (10)</span></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>Since we
-have found the weighting factor on each bin points, it is convenient to
-transform x-y back to x-y coordinate (rotating it by -&#952;</span><span style='font-family:"Times New Roman","serif"'>
-around z axis).  Then, for the polar symmetric smear,</span></p>
-
-<p class=MsoNormal><img src="img/sm_image025.gif"><span
-style='position:relative;top:35.0pt'>      </span> ---- (11)</p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>where,</span></p>
-
-<p class=MsoNormal><img src="img/sm_image026.gif">,</p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>while
-for the x-y symmetric smear,</span></p>
-
-<p class=MsoNormal><img src="img/sm_image027.gif"><span
-style='font-family:"Times New Roman","serif"'>  ---- (12)</span></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>where,</span></p>
-
-<p class=MsoNormal><img src="img/sm_image028.gif"></p>
-
-<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>Here, the
-current version of the SASVIEW uses the Eq. (11) for 2D smearing assuming that
-all the Gaussian weighting functions are aligned in the polar coordinate. </span></p>
-<p> In the control panel, the higher accuracy indicates more and finer binnng points 
-so that it costs more in time. </p>
-
-
-</div>
-
-</body>
-
Index: cs/pre-sphinx-docs/status_bar_help_v0.html
===================================================================
--- docs/pre-sphinx-docs/status_bar_help_v0.html	(revision 54b9ad250e663e6be56b32ad102c67ec8f762b14)
+++ 	(revision )
@@ -1,25 +1,0 @@
-<html>
-<body>
-
-<h4>Status Bar Help</h4>
-<ul>
-<li><a href="#message">Message, Warning, Hint</a></li>
-<li><a href="#console">Console</a></li>
-</ul>
-
-<h5><a name="message">Message, Warning, Hint</a></h5>
-<p> 
-The status bar located at the bottom of the application frame, displays messages,
-hints, warnings and errors.
-</p>
-
-<h5><a name="console">Console</a></h5>
-<p>
-Select <b> light bulb/info icon </b> button in the status bar at the bottom of the application window 
-to display available history.
-During a long task, the console can also help users to understand the status in progressing.
-</p>
-
-
-</body>
-</html>
Index: docs/sphinx-docs/build_sphinx.py
===================================================================
--- docs/sphinx-docs/build_sphinx.py	(revision 7168b8b970d6b5be3f4d1a32aaf5b7d6b8fa240a)
+++ docs/sphinx-docs/build_sphinx.py	(revision 296f290508e54c16160ecf8336c29c445870c846)
@@ -29,7 +29,4 @@
 SPHINX_SOURCE = os.path.join(CURRENT_SCRIPT_DIR, "source")
 SPHINX_SOURCE_API = os.path.join(SPHINX_SOURCE, "dev", "api")
-SPHINX_SOURCE_GUIFRAME = os.path.join(SPHINX_SOURCE, "user", "guiframe")
-SPHINX_SOURCE_MODELS = os.path.join(SPHINX_SOURCE, "user", "models")
-SPHINX_SOURCE_PERSPECTIVES = os.path.join(SPHINX_SOURCE, "user", "perspectives")
 
 def _remove_dir(dir_path):
@@ -46,7 +43,4 @@
     _remove_dir(SASVIEW_DOCS)
     _remove_dir(SPHINX_BUILD)
-    _remove_dir(SPHINX_SOURCE_GUIFRAME)
-    _remove_dir(SPHINX_SOURCE_MODELS)
-    _remove_dir(SPHINX_SOURCE_PERSPECTIVES)
 
 def retrieve_user_docs():
Index: docs/sphinx-docs/source/user/user.rst
===================================================================
--- docs/sphinx-docs/source/user/user.rst	(revision 3702c128bb12c6d717b740063dcc6588cc9a8390)
+++ docs/sphinx-docs/source/user/user.rst	(revision ef325c7bca8320e2f8142296c07b335d9c3a1c4b)
@@ -12,28 +12,26 @@
    Plotting Data/Models <guiframe/graph_help>
    
+   Fitting Perspective <fitting/fitting_help>
    
-   Fitting Perspective <perspectives/fitting/fitting_help>
+   P(r) Inversion Perspective <invariant/pr_help>
    
-   P(r) Inversion Perspective <perspectives/pr/pr_help>
-   
-   Invariant Calculation Perspective <perspectives/invariant/invariant_help>
+   Invariant Calculation Perspective <invariant/invariant_help>
    
   
-   Data Operations Tool <perspectives/calculator/data_operator_help>
-      
-   Density/Volume Calculator Tool <perspectives/calculator/density_calculator_help>
+   Data Operations Tool <data_util/data_operator_help>
    
-   Generic Scattering Calculator Tool <perspectives/calculator/sas_calculator_help>
+   SLD Calculator Tool <calculator/sld_calculator_help>
    
-   Image Viewer Tool <perspectives/calculator/image_viewer_help>
-      
-   Kiessig Thickness Calculator Tool <perspectives/calculator/kiessig_calculator_help>
+   Density/Volume Calculator Tool <calculator/density_calculator_help>
    
-   SLD Calculator Tool <perspectives/calculator/sld_calculator_help>
+   Slit Size Calculator Tool <calculator/slit_calculator_help>
    
-   Slit Size Calculator Tool <perspectives/calculator/slit_calculator_help>
+   Kiessig Thickness Calculator Tool <calculator/kiessig_calculator_help>
    
-   SANS Resolution Estimator Tool <perspectives/calculator/resolution_calculator_help>
+   SANS Resolution Estimator Tool <calculator/resolution_calculator_help>
    
+   Generic Scattering Calculator Tool <calculator/sas_calculator_help>
    
-   Python Shell Tool <perspectives/calculator/python_shell_help>
+   Python Shell Tool
+   
+   Image Viewer Tool
Index: stall.txt
===================================================================
--- install.txt	(revision 400155bab01bdb35b3cf83069f57cf9f47005bca)
+++ 	(revision )
@@ -1,2805 +1,0 @@
-﻿Total number of model  wrappers created is 67
-running install
-running bdist_egg
-running egg_info
-writing requirements to sasview.egg-info\requires.txt
-writing sasview.egg-info\PKG-INFO
-writing top-level names to sasview.egg-info\top_level.txt
-writing dependency_links to sasview.egg-info\dependency_links.txt
-writing entry points to sasview.egg-info\entry_points.txt
-package init file 'src\sas\dataloader\readers\schema\__init__.py' not found (or not a regular file)
-reading manifest file 'sasview.egg-info\SOURCES.txt'
-writing manifest file 'sasview.egg-info\SOURCES.txt'
-installing library code to build\bdist.win32\egg
-running install_lib
-running build_py
-copying src\sas\models\BarBellModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\BCCrystalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\BinaryHSModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CappedCylinderModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\Core2ndMomentModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CoreFourShellModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CoreShellBicelleModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CoreShellCylinderModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CoreShellEllipsoidModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CoreShellEllipsoidXTModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CoreShellModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CSParallelepipedModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\CylinderModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\DABModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\DiamCylFunc.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\DiamEllipFunc.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\EllipsoidModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\EllipticalCylinderModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\FCCrystalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\FlexCylEllipXModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\FlexibleCylinderModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\FractalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\FractalO_Z.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\FuzzySphereModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\Gaussian.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\GelFitModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\HardsphereStructure.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\HayterMSAStructure.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\HollowCylinderModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LamellarFFHGModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LamellarModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LamellarPCrystalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LamellarPSHGModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LamellarPSModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LinearPearlsModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\LogNormal.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\Lorentzian.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\MassFractalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\MassSurfaceFractal.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\MicelleSphCoreModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\MultiShellModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\OnionModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\ParallelepipedModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\PearlNecklaceModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\Poly_GaussCoil.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\PringlesModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\RaspBerryModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\RectangularHollowPrismInfThinWallsModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\RectangularHollowPrismModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\RectangularPrismModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\ReflAdvModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\ReflModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\RPAModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\SCCrystalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\Schulz.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\SLDCalFunc.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\SphereModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\SphereSLDModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\SquareWellStructure.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\StackedDisksModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\StarPolymer.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\StickyHSStructure.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\SurfaceFractalModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\TeubnerStreyModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\TriaxialEllipsoidModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\TwoYukawaModel.py -> build\lib.win32-2.7\sas\models
-copying src\sas\models\VesicleModel.py -> build\lib.win32-2.7\sas\models
-running build_ext
-Compiling with mingw32 (64bit=False)
-building 'sas.models.sas_extension.c_models' extension
-C compiler: gcc -O2 -Wall -Wstrict-prototypes
-
-compile options: '-D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c'
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CBinaryHSModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cbinaryhsmodel.o
-Found executable C:\TDM-GCC-32\bin\gcc.exe
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CFlexibleCylinderModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cflexiblecylindermodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\triaxialellipsoid.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\triaxialellipsoid.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\schulz.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\schulz.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\massfractal.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\massfractal.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CSCCrystalModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\csccrystalmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCoreFourShellModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccorefourshellmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\logNormal.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lognormal.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CFractalModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cfractalmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CRaspBerryModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\craspberrymodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\HayterMSA.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\haytermsa.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\coreshellbicelle.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\coreshellbicelle.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\fuzzysphere.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\fuzzysphere.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\hollowcylinder.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\hollowcylinder.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCoreShellModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccoreshellmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCoreShellBicelleModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccoreshellbicellemodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CGaussian.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cgaussian.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\fcc.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\fcc.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CGelFitModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cgelfitmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CFCCrystalModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cfccrystalmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CPearlNecklaceModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cpearlnecklacemodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CSphereSLDModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cspheresldmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\binaryHS_PSF11.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\binaryhs_psf11.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\flexiblecylinder.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\flexiblecylinder.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\libfunc.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\libfunc.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\rpa.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\rpa.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\sld_cal.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\sld_cal.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\dispersion_visitor.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\dispersion_visitor.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CPoly_GaussCoil.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cpoly_gausscoil.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CRectangularHollowPrismInfThinWallsModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\crectangularhollowprisminfthinwallsmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\barbell.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\barbell.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\libigor\libStructureFactor.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\libstructurefactor.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\lorentzian.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lorentzian.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCSParallelepipedModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccsparallelepipedmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CLamellarPSModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\clamellarpsmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\dabmodel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\dabmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\masssurfacefractal.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\masssurfacefractal.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CMassFractalModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cmassfractalmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CMicelleSphCoreModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cmicellesphcoremodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\multishell.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\multishell.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CReflModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\creflmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\csparallelepiped.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\csparallelepiped.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CBarBellModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cbarbellmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\cylinder.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\cylinder.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\DiamEllip.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\diamellip.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\libigor\GaussWeights.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\gaussweights.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\polygausscoil.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\polygausscoil.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\binaryHS.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\binaryhs.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\StickyHS.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\stickyhs.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CMassSurfaceFractal.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cmasssurfacefractal.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CDABModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cdabmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\lamellarPC.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lamellarpc.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CRectangularHollowPrismModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\crectangularhollowprismmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CBCCrystalModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cbccrystalmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\lamellarFF_HG.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lamellarff_hg.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CTeubnerStreyModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cteubnerstreymodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\ellipticalcylinder.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\ellipticalcylinder.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\libigor\2Y_cpoly.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\2y_cpoly.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\capcyl.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\capcyl.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\GelFit.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\gelfit.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\sc.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\sc.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\raspberry.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\raspberry.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CRectangularPrismModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\crectangularprismmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\refl_adv.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\refl_adv.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\Hardsphere.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\hardsphere.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\libigor\2Y_PairCorrelation.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\2y_paircorrelation.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CSLDCalFunc.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\csldcalfunc.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCoreShellEllipsoidModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccoreshellellipsoidmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CLorentzian.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\clorentzian.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CHardsphereStructure.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\chardspherestructure.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\stackeddisks.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\stackeddisks.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CReflAdvModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\crefladvmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\lamellarPS_HG.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lamellarps_hg.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\libigor\2Y_utility.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\2y_utility.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CFractalO_Z.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cfractalo_z.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\libigor\winFuncs.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\winfuncs.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CLamellarPSHGModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\clamellarpshgmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\sphere.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\sphere.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\parameters.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\parameters.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\libigor\libCylinder.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\libcylinder.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\RectangularHollowPrism.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\rectangularhollowprism.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\pringles.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\pringles.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\libigor\libSphere.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\libsphere.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CSchulz.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cschulz.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CSquareWellStructure.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\csquarewellstructure.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CLinearPearlsModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\clinearpearlsmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CEllipticalCylinderModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cellipticalcylindermodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CHayterMSAStructure.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\chaytermsastructure.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\lamellar.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lamellar.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\SquareWell.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\squarewell.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\spheroidXT.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\spheroidxt.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CDiamCylFunc.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cdiamcylfunc.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CStackedDisksModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cstackeddisksmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\refl.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\refl.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CLogNormal.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\clognormal.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CMultiShellModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cmultishellmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CLamellarPCrystalModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\clamellarpcrystalmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CSphereModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cspheremodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\starpolymer.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\starpolymer.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\gaussian.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\gaussian.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\micelleSphCore.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\micellesphcore.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CFlexCylEllipXModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cflexcylellipxmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CDiamEllipFunc.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cdiamellipfunc.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CStickyHSStructure.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cstickyhsstructure.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\teubner_strey.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\teubner_strey.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\libigor\2Y_TwoYukawa.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\2y_twoyukawa.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CParallelepipedModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cparallelepipedmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\fractal.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\fractal.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CFuzzySphereModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cfuzzyspheremodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCylinderModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccylindermodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\bcc.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\bcc.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CTwoYukawaModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ctwoyukawamodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\onion.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\onion.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\surfacefractal.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\surfacefractal.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\linearpearls.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\linearpearls.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCoreShellCylinderModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccoreshellcylindermodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\ellipsoid.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\ellipsoid.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CLamellarModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\clamellarmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CSurfaceFractalModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\csurfacefractalmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\spheroid.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\spheroid.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CTriaxialEllipsoidModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ctriaxialellipsoidmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\RectangularHollowPrismInfThinWalls.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\rectangularhollowprisminfthinwalls.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\libigor\libTwoPhase.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\libtwophase.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CEllipsoidModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cellipsoidmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CStarPolymer.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cstarpolymer.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\coreshellsphere.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\coreshellsphere.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\vesicle.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\vesicle.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CRPAModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\crpamodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CVesicleModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cvesiclemodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\spheresld.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\spheresld.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CHollowCylinderModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\chollowcylindermodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\RectangularPrism.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\rectangularprism.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\FractalQtoN.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\fractalqton.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\TwoYukawa.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\twoyukawa.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CLamellarFFHGModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\clamellarffhgmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCappedCylinderModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccappedcylindermodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\gamma_win.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\gamma_win.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\coreshellcylinder.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\coreshellcylinder.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCoreShellEllipsoidXTModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccoreshellellipsoidxtmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CPringlesModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\cpringlesmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\corefourshell.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\corefourshell.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\flexcyl_ellipX.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\flexcyl_ellipx.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\CCore2ndMomentModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\ccore2ndmomentmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\libigor\2Y_OneYukawa.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\2y_oneyukawa.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\c_models.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\c_models.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\coresecondmoment.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\coresecondmoment.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\python_wrapper\generated\COnionModel.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\python_wrapper\generated\conionmodel.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\DiamCyl.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\diamcyl.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\disperser.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\disperser.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\lamellarPS.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lamellarps.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\parallelepiped.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\parallelepiped.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\librefl.c -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\librefl.o
-gcc -O2 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x0900 -Isrc\sas\models\c_extension\libigor -Isrc\sas\models\include -Isrc\sas\models\c_extension\c_models -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include\numpy -Isrc\sas\models\c_extension\cephes -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\include -IC:\Users\gonzalezm\AppData\Local\Continuum\Anaconda\PC -c src\sas\models\c_extension\c_models\pearlnecklace.cpp -o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\pearlnecklace.o
-g++ -shared build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\2y_cpoly.o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\2y_oneyukawa.o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\2y_paircorrelation.o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\2y_twoyukawa.o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\2y_utility.o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\gaussweights.o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\libcylinder.o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\libsphere.o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\libstructurefactor.o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\libtwophase.o build\temp.win32-2.7\Release\src\sas\models\c_extension\libigor\winfuncs.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\barbell.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\bcc.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\binaryhs.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\binaryhs_psf11.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\capcyl.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\corefourshell.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\coresecondmoment.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\coreshellbicelle.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\coreshellcylinder.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\coreshellsphere.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\csparallelepiped.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\cylinder.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\c_models.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\dabmodel.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\diamcyl.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\diamellip.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\disperser.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\dispersion_visitor.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\ellipsoid.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\ellipticalcylinder.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\fcc.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\flexcyl_ellipx.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\flexiblecylinder.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\fractal.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\fractalqton.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\fuzzysphere.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\gamma_win.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\gaussian.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\gelfit.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\hardsphere.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\haytermsa.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\hollowcylinder.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lamellar.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lamellarff_hg.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lamellarpc.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lamellarps.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lamellarps_hg.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\libfunc.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\librefl.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\linearpearls.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lognormal.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\lorentzian.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\massfractal.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\masssurfacefractal.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\micellesphcore.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\multishell.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\onion.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\parallelepiped.o build\temp.win32-2.7\Release\src\sas\models\c_extension\c_models\parameters.o 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-byte-compiling build\bdist.win32\egg\sas\plottools\binder.py to binder.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\canvas.py to canvas.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\config.py to config.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\fitDialog.py to fitDialog.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\fittings.py to fittings.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\LabelDialog.py to LabelDialog.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\LineModel.py to LineModel.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\PlotPanel.py to PlotPanel.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\plottables.py to plottables.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\plottable_interactor.py to plottable_interactor.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\PropertyDialog.py to PropertyDialog.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\SimpleFont.py to SimpleFont.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\SizeDialog.py to SizeDialog.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\TextDialog.py to TextDialog.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\toolbar.py to toolbar.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\transform.py to transform.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\unitConverter.py to unitConverter.pyc
-byte-compiling build\bdist.win32\egg\sas\plottools\__init__.py to __init__.pyc
-byte-compiling build\bdist.win32\egg\sas\pr\core\__init__.py to __init__.pyc
-byte-compiling build\bdist.win32\egg\sas\pr\distance_explorer.py to distance_explorer.pyc
-byte-compiling build\bdist.win32\egg\sas\pr\invertor.py to invertor.pyc
-byte-compiling build\bdist.win32\egg\sas\pr\num_term.py to num_term.pyc
-byte-compiling build\bdist.win32\egg\sas\pr\__init__.py to __init__.pyc
-byte-compiling build\bdist.win32\egg\sas\sasview\custom_config.py to custom_config.pyc
-byte-compiling build\bdist.win32\egg\sas\sasview\installer_generator.py to installer_generator.pyc
-byte-compiling build\bdist.win32\egg\sas\sasview\local_config.py to local_config.pyc
-byte-compiling build\bdist.win32\egg\sas\sasview\sasview.py to sasview.pyc
-byte-compiling build\bdist.win32\egg\sas\sasview\setup_exe.py to setup_exe.pyc
-byte-compiling build\bdist.win32\egg\sas\sasview\setup_mac.py to setup_mac.pyc
-byte-compiling build\bdist.win32\egg\sas\sasview\welcome_panel.py to welcome_panel.pyc
-byte-compiling build\bdist.win32\egg\sas\sasview\__init__.py to __init__.pyc
-byte-compiling build\bdist.win32\egg\sas\__init__.py to __init__.pyc
-creating stub loader for sas\pr\core\pr_inversion.pyd
-creating stub loader for park\_modeling.pyd
-creating stub loader for sas\models\sas_extension\c_models.pyd
-creating stub loader for sas\models\sas_extension\smearer.pyd
-creating stub loader for sas\models\sas_extension\smearer2d_helper.pyd
-creating stub loader for sas\models\sas_extension\sld2i.pyd
-byte-compiling build\bdist.win32\egg\sas\pr\core\pr_inversion.py to pr_inversion.pyc
-byte-compiling build\bdist.win32\egg\park\_modeling.py to _modeling.pyc
-byte-compiling build\bdist.win32\egg\sas\models\sas_extension\c_models.py to c_models.pyc
-byte-compiling build\bdist.win32\egg\sas\models\sas_extension\smearer.py to smearer.pyc
-byte-compiling build\bdist.win32\egg\sas\models\sas_extension\smearer2d_helper.py to smearer2d_helper.pyc
-byte-compiling build\bdist.win32\egg\sas\models\sas_extension\sld2i.py to sld2i.pyc
-creating build\bdist.win32\egg\EGG-INFO
-copying sasview.egg-info\PKG-INFO -> build\bdist.win32\egg\EGG-INFO
-copying sasview.egg-info\SOURCES.txt -> build\bdist.win32\egg\EGG-INFO
-copying sasview.egg-info\dependency_links.txt -> build\bdist.win32\egg\EGG-INFO
-copying sasview.egg-info\entry_points.txt -> build\bdist.win32\egg\EGG-INFO
-copying sasview.egg-info\not-zip-safe -> build\bdist.win32\egg\EGG-INFO
-copying sasview.egg-info\requires.txt -> build\bdist.win32\egg\EGG-INFO
-copying sasview.egg-info\top_level.txt -> build\bdist.win32\egg\EGG-INFO
-writing build\bdist.win32\egg\EGG-INFO\native_libs.txt
-creating 'dist\sasview-3.0.0.post0-py2.7-win32.egg' and adding 'build\bdist.win32\egg' to it
-removing 'build\bdist.win32\egg' (and everything under it)
-Processing sasview-3.0.0.post0-py2.7-win32.egg
-removing 'c:\users\gonzalezm\appdata\roaming\python\python27\site-packages\sasview-3.0.0.post0-py2.7-win32.egg' (and everything under it)
-creating c:\users\gonzalezm\appdata\roaming\python\python27\site-packages\sasview-3.0.0.post0-py2.7-win32.egg
-Extracting sasview-3.0.0.post0-py2.7-win32.egg to c:\users\gonzalezm\appdata\roaming\python\python27\site-packages
-sasview 3.0.0.post0 is already the active version in easy-install.pth
-Installing sasview-script.py script to C:\Users\gonzalezm\AppData\Roaming\Python\Scripts
-Installing sasview.exe script to C:\Users\gonzalezm\AppData\Roaming\Python\Scripts
-Installing sasview.exe.manifest script to C:\Users\gonzalezm\AppData\Roaming\Python\Scripts
-
-Installed c:\users\gonzalezm\appdata\roaming\python\python27\site-packages\sasview-3.0.0.post0-py2.7-win32.egg
-Processing dependencies for sasview==3.0.0.post0
-Searching for reportlab==3.1.44
-Best match: reportlab 3.1.44
-Adding reportlab 3.1.44 to easy-install.pth file
-
-Using c:\users\gonzalezm\appdata\local\continuum\anaconda\lib\site-packages
-Searching for html5lib==1.0b3
-Best match: html5lib 1.0b3
-Processing html5lib-1.0b3-py2.7.egg
-html5lib 1.0b3 is already the active version in easy-install.pth
-
-Using c:\users\gonzalezm\appdata\local\continuum\anaconda\lib\site-packages\html5lib-1.0b3-py2.7.egg
-Searching for lxml==3.4.1
-Best match: lxml 3.4.1
-Adding lxml 3.4.1 to easy-install.pth file
-
-Using c:\users\gonzalezm\appdata\local\continuum\anaconda\lib\site-packages
-Searching for pyparsing==1.5.7
-Best match: pyparsing 1.5.7
-Processing pyparsing-1.5.7-py2.7-win32.egg
-pyparsing 1.5.7 is already the active version in easy-install.pth
-
-Using c:\users\gonzalezm\appdata\roaming\python\python27\site-packages\pyparsing-1.5.7-py2.7-win32.egg
-Searching for periodictable==1.4.1
-Best match: periodictable 1.4.1
-Processing periodictable-1.4.1-py2.7.egg
-periodictable 1.4.1 is already the active version in easy-install.pth
-
-Using c:\users\gonzalezm\appdata\roaming\python\python27\site-packages\periodictable-1.4.1-py2.7.egg
-Searching for bumps==0.7.5.4
-Best match: bumps 0.7.5.4
-Processing bumps-0.7.5.4-py2.7.egg
-bumps 0.7.5.4 is already the active version in easy-install.pth
-Installing bumps script to C:\Users\gonzalezm\AppData\Roaming\Python\Scripts
-
-Using c:\users\gonzalezm\appdata\roaming\python\python27\site-packages\bumps-0.7.5.4-py2.7.egg
-Searching for six==1.9.0
-Best match: six 1.9.0
-Adding six 1.9.0 to easy-install.pth file
-
-Using c:\users\gonzalezm\appdata\local\continuum\anaconda\lib\site-packages
-Searching for numpy==1.9.1
-Best match: numpy 1.9.1
-Adding numpy 1.9.1 to easy-install.pth file
-
-Using c:\users\gonzalezm\appdata\local\continuum\anaconda\lib\site-packages
-Finished processing dependencies for sasview==3.0.0.post0
Index: src/sas/calculator/media/density_calculator_help.rst
===================================================================
--- src/sas/calculator/media/density_calculator_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
+++ src/sas/calculator/media/density_calculator_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
@@ -0,0 +1,3 @@
+..density_calculator_help.rst
+
+Placeholder for density calculator help
Index: src/sas/calculator/media/kiessig_calculator_help.rst
===================================================================
--- src/sas/calculator/media/kiessig_calculator_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
+++ src/sas/calculator/media/kiessig_calculator_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
@@ -0,0 +1,3 @@
+..kiessig_calculator_help.rst
+
+Placeholder for Kiessig calculator help
Index: src/sas/calculator/media/resolution_calculator_help.rst
===================================================================
--- src/sas/calculator/media/resolution_calculator_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
+++ src/sas/calculator/media/resolution_calculator_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
@@ -0,0 +1,3 @@
+..resolution_calculator_help.rst
+
+Placeholder for resolution calculator help
Index: src/sas/calculator/media/sas_calculator_help.rst
===================================================================
--- src/sas/calculator/media/sas_calculator_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
+++ src/sas/calculator/media/sas_calculator_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
@@ -0,0 +1,3 @@
+..sas_calculator_help.rst
+
+Placeholder for generic SAS calculator help
Index: src/sas/calculator/media/sld_calculator.rst
===================================================================
--- src/sas/calculator/media/sld_calculator.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
+++ src/sas/calculator/media/sld_calculator.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
@@ -0,0 +1,3 @@
+..sld_calculator.rst
+
+Placeholder for SLD calculator help
Index: src/sas/calculator/media/slit_calculator_help.rst
===================================================================
--- src/sas/calculator/media/slit_calculator_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
+++ src/sas/calculator/media/slit_calculator_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
@@ -0,0 +1,3 @@
+..slit_calculator_help.rst
+
+Placeholder for slit calculator help
Index: src/sas/data_util/media/data_operator_help.rst
===================================================================
--- src/sas/data_util/media/data_operator_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
+++ src/sas/data_util/media/data_operator_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
@@ -0,0 +1,3 @@
+..data_operator_help.rst
+
+Placeholder for data operator help
Index: src/sas/dataloader/data_info.py
===================================================================
--- src/sas/dataloader/data_info.py	(revision 7eaf9f21f295baa6e9594bfada6f9dde6baa5f67)
+++ src/sas/dataloader/data_info.py	(revision b3efb7dfc293a955756eccf52e0bbd30d3a2c32d)
@@ -25,55 +25,4 @@
 import numpy
 import math
-
-
-class plottable_sesans1D:
-    """
-    SESANS is a place holder for 1D SESANS plottables.
-    
-    #TODO: This was directly copied from the plottables_1D.
-    #TODO: The class has not been updated from there.
-    """
-    # The presence of these should be mutually
-    # exclusive with the presence of Qdev (dx)
-    x = None
-    y = None
-    dx = None
-    dy = None
-    ## Slit smearing length
-    dxl = None
-    ## Slit smearing width
-    dxw = None
-    
-    # Units
-    _xaxis = ''
-    _xunit = ''
-    _yaxis = ''
-    _yunit = ''
-    
-    def __init__(self, x, y, dx=None, dy=None, dxl=None, dxw=None):
-        self.x = numpy.asarray(x)
-        self.y = numpy.asarray(y)
-        if dx is not None:
-            self.dx = numpy.asarray(dx)
-        if dy is not None:
-            self.dy = numpy.asarray(dy)
-        if dxl is not None:
-            self.dxl = numpy.asarray(dxl)
-        if dxw is not None: 
-            self.dxw = numpy.asarray(dxw)
-
-    def xaxis(self, label, unit):
-        """
-        set the x axis label and unit
-        """
-        self._xaxis = label
-        self._xunit = unit
-        
-    def yaxis(self, label, unit):
-        """
-        set the y axis label and unit
-        """
-        self._yaxis = label
-        self._yunit = unit
 
 
@@ -991,80 +940,4 @@
         
         
-class SESANSData1D(plottable_sesans1D, DataInfo):
-    """
-    SESANS 1D data class
-    """
-    x_unit = '1/A'
-    y_unit = '1/cm'
-    
-    def __init__(self, x, y, dx=None, dy=None):
-        DataInfo.__init__(self)
-        plottable_sesans1D.__init__(self, x, y, dx, dy)
-        
-    def __str__(self):
-        """
-        Nice printout
-        """
-        _str =  "%s\n" % DataInfo.__str__(self)
-    
-        _str += "Data:\n"
-        _str += "   Type:         %s\n" % self.__class__.__name__
-        _str += "   X-axis:       %s\t[%s]\n" % (self._xaxis, self._xunit)
-        _str += "   Y-axis:       %s\t[%s]\n" % (self._yaxis, self._yunit)
-        _str += "   Length:       %g\n" % len(self.x)
-
-        return _str
-
-    def is_slit_smeared(self):
-        """
-        Check whether the data has slit smearing information
-        
-        :return: True is slit smearing info is present, False otherwise
-        
-        """
-        def _check(v):
-            if (v.__class__ == list or v.__class__ == numpy.ndarray) \
-                and len(v) > 0 and min(v) > 0:
-                return True
-            
-            return False
-        
-        return _check(self.dxl) or _check(self.dxw)
-        
-    def clone_without_data(self, length=0, clone=None):
-        """
-        Clone the current object, without copying the data (which
-        will be filled out by a subsequent operation).
-        The data arrays will be initialized to zero.
-        
-        :param length: length of the data array to be initialized
-        :param clone: if provided, the data will be copied to clone
-        """
-        from copy import deepcopy
-        
-        if clone is None or not issubclass(clone.__class__, Data1D):
-            x  = numpy.zeros(length)
-            dx = numpy.zeros(length)
-            y  = numpy.zeros(length)
-            dy = numpy.zeros(length)
-            clone = Data1D(x, y, dx=dx, dy=dy)
-        
-        clone.title          = self.title
-        clone.run            = self.run
-        clone.filename       = self.filename
-        clone.instrument     = self.instrument
-        clone.notes          = deepcopy(self.notes)
-        clone.process        = deepcopy(self.process)
-        clone.detector       = deepcopy(self.detector)
-        clone.sample         = deepcopy(self.sample)
-        clone.source         = deepcopy(self.source)
-        clone.collimation    = deepcopy(self.collimation)
-        clone.trans_spectrum = deepcopy(self.trans_spectrum)
-        clone.meta_data      = deepcopy(self.meta_data)
-        clone.errors         = deepcopy(self.errors)
-        
-        return clone
-    
-    
 class Data2D(plottable_2D, DataInfo):
     """
Index: src/sas/dataloader/manipulations.py
===================================================================
--- src/sas/dataloader/manipulations.py	(revision 400155bab01bdb35b3cf83069f57cf9f47005bca)
+++ src/sas/dataloader/manipulations.py	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -582,5 +582,5 @@
     """
     #Todo: remove center.
-    def __init__(self, r_min=0, r_max=0, center_x=0, center_y=0, nbins=36):
+    def __init__(self, r_min=0, r_max=0, center_x=0, center_y=0, nbins=20):
         # Minimum radius
         self.r_min = r_min
@@ -593,5 +593,4 @@
         # Number of angular bins
         self.nbins_phi = nbins
-
         
     def __call__(self, data2D):
@@ -623,8 +622,5 @@
         phi_values = numpy.zeros(self.nbins_phi)
         phi_err    = numpy.zeros(self.nbins_phi)
-	
-	# Shift to apply to calculated phi values in order to center first bin at zero
-	phi_shift = Pi / self.nbins_phi
-
+        
         for npt in range(len(data)):
             frac = 0
@@ -641,9 +637,9 @@
                 continue
             # binning           
-            i_phi = int(math.floor((self.nbins_phi) * (phi_value+phi_shift) / (2 * Pi)))
+            i_phi = int(math.floor((self.nbins_phi) * phi_value / (2 * Pi)))
             
             # Take care of the edge case at phi = 2pi.
-            if i_phi >= self.nbins_phi:
-                i_phi =  0
+            if i_phi == self.nbins_phi:
+                i_phi =  self.nbins_phi - 1
             phi_bins[i_phi] += frac * data[npt]
             
@@ -659,5 +655,5 @@
             phi_bins[i] = phi_bins[i] / phi_counts[i]
             phi_err[i] = math.sqrt(phi_err[i]) / phi_counts[i]
-            phi_values[i] = 2.0 * math.pi / self.nbins_phi * (1.0 * i)
+            phi_values[i] = 2.0 * math.pi / self.nbins_phi * (1.0 * i + 0.5)
             
         idx = (numpy.isfinite(phi_bins))
Index: src/sas/fit/media/fitting_help.rst
===================================================================
--- src/sas/fit/media/fitting_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
+++ src/sas/fit/media/fitting_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
@@ -0,0 +1,3 @@
+..fitting_help.rst
+
+Placeholder for fitting help
Index: src/sas/guiframe/documentation_window.py
===================================================================
--- src/sas/guiframe/documentation_window.py	(revision a4340d15b57fa97c7b1aa5163477cfd700794496)
+++ src/sas/guiframe/documentation_window.py	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -1,7 +1,5 @@
-import os
-import logging
 import wx
 from wx import Frame
-import webbrowser
+
 wx_supports_html2 = float(wx.__version__[:3]) >= 2.9
 if wx_supports_html2:
@@ -10,32 +8,14 @@
     import wx.html as html
 
-   
 class DocumentationWindow(Frame):
     def __init__(self, parent, id, path, title='Help', size=(850, 540)):
         Frame.__init__(self, parent, id, title, size=size)
 
-        SPHINX_DOC_ENV = "SASVIEW_DOC_PATH"
-        if SPHINX_DOC_ENV in os.environ:
-            docs_path = os.path.join(os.environ[SPHINX_DOC_ENV])
-        else:
-            docs_path = os.path.join(PATH_APP, "..", "..", "doc")
-
-        if (not os.path.exists(docs_path)):
-            print "logging"
-            logging.error("Could not find Sphinx documentation at %s \
-            -- has it been built?", docs_path)
-
-        elif wx_supports_html2:
+        if wx_supports_html2:
             # Complete HTML/CSS support!
             self.view = html.WebView.New(self)
-            self.view.LoadURL("file://" + docs_path + '\\' + path)
-            self.Show()
-        else: 
-            #For cases that do not build against current version dependency
-            # Wx 3.0 we provide a webbrowser call - this is particularly for 
-            #Red hat used at SNS for which Wx 3.0 is not available.  This
-            #does not deal with issue of math in docs of course. 
-
-            webbrowser.open_new_tab("file:///" + docs_path + "/" + path)
-
- 
+            self.view.LoadURL("file://" + path)
+        else:
+            # This ain't gonna be pretty...
+            self.view = html.HtmlWindow(self, -1, style=wx.NO_BORDER)
+            self.view.LoadPage(path)
Index: src/sas/guiframe/gui_manager.py
===================================================================
--- src/sas/guiframe/gui_manager.py	(revision a4340d15b57fa97c7b1aa5163477cfd700794496)
+++ src/sas/guiframe/gui_manager.py	(revision 9bbb627ef6fd79891e4df4ebca57204c76bc08d1)
@@ -24,4 +24,5 @@
 import logging
 import httplib
+import webbrowser
 
 
@@ -2152,7 +2153,8 @@
     def _onSphinxDocs(self, evt):
         """
-        Bring up Sphinx Documentation at top level whenever the menu item
-        'documentation' is clicked. Calls DocumentationWindow with the top
-        level path of "index.html"
+        Bring up Sphinx Documentation.  If Wx 2.9 or higher is installed 
+        with proper HTML support then Pop up a Sphinx Documentation dialog
+        locally.  If not pop up a new tab in the default system browser 
+        calling the documentation website.
         
         :param evt: menu event
@@ -2160,9 +2162,24 @@
         # Running SasView "in-place" using run.py means the docs will be in a
         # different place than they would otherwise.
-        from documentation_window import DocumentationWindow
-        
-        sphinx_doc_viewer = DocumentationWindow(self, -1, "index.html")
-#        sphinx_doc_viewer.Show()
-
+
+        show_sphinx_docs = float(wx.__version__[:3]) >= 2.9
+        if show_sphinx_docs:
+            SPHINX_DOC_ENV = "SASVIEW_DOC_PATH"
+            if SPHINX_DOC_ENV in os.environ:
+                docs_path = os.path.join(os.environ[SPHINX_DOC_ENV], "index.html")
+            else:
+                docs_path = os.path.join(PATH_APP, "..", "..", "doc", "index.html")
+
+            if os.path.exists(docs_path):
+                from documentation_window import DocumentationWindow
+
+                sphinx_doc_viewer = DocumentationWindow(None, -1, docs_path)
+                sphinx_doc_viewer.Show()
+            else:
+                logging.error("Could not find Sphinx documentation at '%' -- has it been built?" % docs_path)
+        else:
+            #For red hat and maybe others who do not have Wx 3.0
+            #just send to webpage of documentation
+            webbrowser.open_new_tab('http://www.sasview.org/sasview')
 
     def set_manager(self, manager):
Index: src/sas/guiframe/local_perspectives/data_loader/data_loader.py
===================================================================
--- src/sas/guiframe/local_perspectives/data_loader/data_loader.py	(revision b45cde35d36e3d241e3ee1427715d7ff31251ea7)
+++ src/sas/guiframe/local_perspectives/data_loader/data_loader.py	(revision b3efb7dfc293a955756eccf52e0bbd30d3a2c32d)
@@ -233,5 +233,5 @@
                 error_message += "Make sure the content of your file"
                 error_message += " is properly formatted.\n\n"
-                error_message += "When contacting the SasView team, mention the"
+                error_message += "When contacting the DANSE team, mention the"
                 error_message += " following:\n%s" % str(error)
             elif data_error:
Index: src/sas/guiframe/local_perspectives/plotting/AnnulusSlicer.py
===================================================================
--- src/sas/guiframe/local_perspectives/plotting/AnnulusSlicer.py	(revision 400155bab01bdb35b3cf83069f57cf9f47005bca)
+++ src/sas/guiframe/local_perspectives/plotting/AnnulusSlicer.py	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -35,5 +35,5 @@
     
         ## Number of points on the plot
-        self.nbins = 36
+        self.nbins = 20
         #Cursor position of Rings (Left(-1) or Right(1))
         self.xmaxd = self.base.data2D.xmax
@@ -131,7 +131,7 @@
                    math.fabs(self.outer_circle.get_radius()))
         #if the user does not specify the numbers of points to plot 
-        # the default number will be nbins= 36
+        # the default number will be nbins= 20
         if nbins == None:
-            self.nbins = 36
+            self.nbins = 20
         else:
             self.nbins = nbins
Index: src/sas/guiframe/media/Graph_help.html
===================================================================
--- src/sas/guiframe/media/Graph_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/guiframe/media/Graph_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,122 @@
+<html>
+<body>
+
+<h4>Graph Menu</h4>
+<ul>
+<li><a href="#intro">Introduction</a></li>
+<li><a href="#reset">Reset Graph</a></li>
+<li><a href="#hide">Hide/Show/Delete Graph</a></li>
+<li><a href="#info">Data Info</a></li>
+<li><a href="#save">Save plot Image</a></li>
+<li><a href="#savedata">Save Data</a></li>
+<li><a href="#drag">Drag plot</a></li>
+<li><a href="#zoom">Zoom In/Out</a></li>
+<li><a href="#remove">Remove Data</a></li>
+<li><a href="#scale">Change Scale</a></li>
+<li><a href="#linearfit">Linear Fit</a></li>
+<li><a href="#modify">Other Graph Modifications</a></li>
+</ul>
+
+<h5><a name="intro">Introduction</a></h5>
+<p> 
+	Locating the pointer and right-clicking on a data/theory plot will bring a context menu.
+	On the menu, select a menu item. 
+</p>
+
+<h5><a name="reset">Reset Graph</a></h5>
+<p>
+	To reset the graph's axis range, right click on the plot and the context menu pops-up.
+	Select <b>Reset Graph</b> and the plot will take its initial range. 
+	Also the 'home' icon in tool bar will do the same.
+</p>
+
+<h5><a name="hide">Hide/Show/Delete Graph</a></h5>
+<p>
+	To Hide, click the Hide (bar) button in the tool bar.<br>
+	To Show, select the the 'Show' menuitem in the 'Graph' menu in the menu bar.<br>
+	To Delete, click the 'x' button in the title bar.<br>
+	Note: If a residuals graph (in Fitting) is hidden, it will not show up after computation.
+</p>
+
+<h5><a name="save"> Save Plot Image</a></h5>
+<p>
+	Right click on plot. Context menu will pop-up select save image [file name].A dialog
+	window opens and write a the name of the file to save and click on <b>Save Image.</b>
+</p>
+
+<h5><a name="info"> Data Info</a></h5>
+<p>
+	From the context menu, select 'Data Info' to see the data information dialog panel.
+</p>
+
+<h5><a name="savedata"> Save Data</a></h5>
+<p>
+	From the context menu, select 'Save points as a file' for 1D, or 'Save as a file(DAT)'
+	for 2D. Note that two formats, txt and xml, are available in 1D saving.
+</p>
+
+
+<h5><a name="drag"> Drag Plot</a></h5>
+<p>
+Select the <b>crossed arrows</b>  button on the plot panel <b>toolbar </b> to drag the plot.
+To disable dragging mode, unselect the same button on the toolbar.
+</p>
+
+<h5><a name="remove">Remove data from plot</a></h5>
+<p>
+	Highlight the plot and the context menu appears.Select <b>remove [file name]</b>.
+	The plot selected will disappear.
+</p>
+
+<h5><a name="zoom">Zoom In/Out</a></h5>
+<p>
+ Select the <b>rectangle</b>  button on the plot panel <b>toolbar </b> to zoom in
+ a region of the plot.
+</p>
+<p>
+To disable zoom mode, unselect the same button on the toolbar. 
+After zoom in a region, select <b>left arrow</b> or <b>right arrow</b>button on the toolbar
+to set the graph the the previous size.
+If a mouse wheel button is available, <b>zoom in/out</b> by scrolling the mouse wheel
+ ( see 'Key combination' help for details).
+</p>
+<h5><a name="scale">Change Scale</a></h5>
+<p>
+	If the loaded data is a 1-D data.Changing scale or Data Representation will work as
+	followed:<b>right click</b> on the plot window.
+	A context menu pops-up  and select <b>Change Scale</b>. A dialog window titled<b>
+	select the scale of the graph</b> will pop-up then change the <b>x</b>, the <b>y</b>
+	and the <b>view </b> values as wish.
+	The 'view' option includes the axis scale short-cuts such as Linear, Guinier, Cross-sectional (XC)
+	Guinier, and Porod plot scale.  For a proper data set, these axis scales can be used to estimate 
+	Rg, Rod diameter, or Backgroud of neutron scattering data respectively (via 'Linear Fit'; see below).
+	<br>
+	For a 2D image, <b>Right click</b> on the image to pop-up the context
+	menu. Select <Toggle linear/Log scale> to switch from linear to log scale. The scale 
+	selected is printed on the statusbar.
+	
+</p>
+
+<h5><a name="linearfit">Linear Fit</a></h5>
+<p>
+	Linear fit is to perform a line model fitting keeping the scale of the plot. 
+	Highlight data to fit. 
+	From the context menu
+	select <b> Linear Fit</b>.A dialog window appears.
+	Change model initial parameters, data limits
+	and hit <b> fit</b> button. 
+	New parameters values are displayed and the line with the new 
+	parameters is added to the plot.
+	Especially for Guinier, XC Guinier, and Porod plot scale, this 'Linear Fit' will provides Rg, 
+	Rod diameter, and background, respectively.  The following figure shows an example for the Guinier scale. 
+	</p>
+	<br>
+	<img src="guinier_fit.png" /><br>
+	<br>
+
+<h5><a name="modify">Other Graph Modifications</a></h5>
+<p>
+	Some custom modifications of the symbols, text, axis, etc of the graph are provided
+</p>
+</body>
+</html>
Index: src/sas/guiframe/media/averaging_help.html
===================================================================
--- src/sas/guiframe/media/averaging_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/guiframe/media/averaging_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,107 @@
+<html>
+<body>
+
+<h4>2D Data Averaging</h4>
+<ul>
+<li><a href="#Description">Description</a></li>
+<li><a href="#How to use">How to Average? </a></li>
+<p> Available averagings: </p>
+<li><a href="#Circular Average">Perform Circular Average</a></li>
+<li><a href="#Masked Average">Masked Circular Average</a></li>
+<li><a href="#Sector"> Sector [Q view]</a></li>
+<li><a href="#Annulus"> Annulus [Phi view]</a></li>
+<li><a href="#Box sum"> Box sum</a></li>
+<li><a href="#Box averaging in Qx"> Box averaging in Qx</a></li>
+<li><a href="#Box averaging in Qy"> Box averaging in Qy</a></li>
+
+</ul>
+<h5><a name="Description">Description</a></h5>
+<p>
+ This feature allows you to perform different types of averages on your data,
+ and allows you to see what regions of the detector will contribute to 
+ the average. 
+ The region to be averaged will be drown and can be modified by dragging the lines around. 
+</p>
+
+
+<h5><a name="How to use">How to Average?</a></h5>
+<p>
+Right click on 2D data for the context menu to appear. Select one type of averages
+among <b>"sector [Q view]", "Annulus [Phi view]", "Box sum", "Box averaging in Qx ",
+"box averaging on Qy","Perform circular Average".</b>
+</p> 
+<p>
+A slicer will appear except for <b> "Perform circular Average"</b>
+that you can drag by clicking on a slicer 's marker. 
+ When the marker is highlighted in red , it means that the slicer can change size.You can
+ also move some of the slicer by simply drag its side when highlighted in red.
+ the slicer size will be reset to its previous size if the user try to select a region greater 
+ than the size of the data.
+ 
+</p>
+ <p>The user can also select a region to average when a slicer has been selected already by <b>right 
+ clicking </b> on the context menu and selecting <b>Edit Slicer Parameters</b>. The dialog window 
+ will appears and the user can enter values to selected a region or selected numbers of points to 
+ plot <b>nbins</b>.
+</p>
+ 
+<p>
+ For <b>Box sum</b> , when the user selects this option, a new panel is created containing 
+ the result of average of the sum of every pixels contains on  that data.The user can also enter 
+ values to select a region.
+</p>
+
+<h5><a name="Circular Average">Perform Circular Average</a></h5>
+<p>
+It will perform and average in constant q-rings around the (x,y)
+ pixel location of the beam center. 
+</p>
+
+
+<h5><a name="Masked Average">Masked Circular Average</a></h5>
+<p>
+This operation is same as 'Perform Circular Average' except that the masked region is excluded if masked.
+</p>
+
+<h5><a name="Sector">Sector [Q view]</a></h5>
+<p>
+It averages in constant q-arcs. The width of the sector
+ is specified in degrees (+/- delta phi) each direction from the central angle (phi).
+</p>
+
+<h5><a name="Annulus"> Annulus [Phi view]</a></h5>
+<p>
+It performs an average between two q-values centered in (0,0),
+ and averaged over a width of a specified number of pixels.
+ The data is returned as a function of angle (phi) in degrees. 
+ Moving one circle of this slicer
+ to radius of zero corresponding to a circular averaging on radius qmax , 
+ the outer circle.
+  The angle zero starts from the positive x-axis direction.
+</p>
+
+<h5><a name="Box sum"> Box sum</a></h5>
+<p>
+Perform the sum of counts in a 2D region of interest.When editing the slicer ,the user can 
+enter the length and the width the rectangle slicer and the coordinates of the center of this
+rectangle. 
+</p>
+<h5><a name="Box averaging in Qx"> Box averaging in Qx</a></h5>
+<p>
+Computes average I(Qx) for a region of interest. When editing the slicer ,the user can 
+control the length and the width the rectangle slicer. 
+The averaged output is calculated from the constant bins with rectangular shape.
+The resultant q values are nominal values, i.e., the central values of each bins on the x-axis.
+
+</p>
+<h5><a name="Box averaging in Qy"> Box averaging in Qy</a></h5>
+<p>
+ Computes average I(Qy) for a region of interest.When editing the slicer ,the user can 
+control the length and the width the rectangle slicer. 
+The averaged output is calculated from the constant bins with rectangular shape.
+The resultant q values are nominal values, i.e., the central values of each bins on the y-axis.
+</p>
+
+</body>
+</html>
+
Index: src/sas/guiframe/media/change_scale_help.html
===================================================================
--- src/sas/guiframe/media/change_scale_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/guiframe/media/change_scale_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,16 @@
+<html>
+<body>
+<h4>Change scale</h4>
+<p>
+	If the loaded data is a 1-D data.Changing scale or Data Representation will work as
+	followed:<b>right click</b> on the plot window.
+	A context menu pops-up  and select <b>Change Scale</b>. A dialog window titled<b>
+	select the scale of the graph</b> will pop-up then change the <b>x</b>, the <b>y</b>
+	and the <b>view </b> values as wish.
+	If the loaded data  is an image.<b>Right click</b> on the image to pop-up the context
+	menu. Select <Toggle linear/Log scale> to switch from linear to log scale. The scale 
+	selected is printed on the statusbar.
+	
+</p>
+</body>
+</html>
Index: src/sas/guiframe/media/data_explorer_help.html
===================================================================
--- src/sas/guiframe/media/data_explorer_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/guiframe/media/data_explorer_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,101 @@
+<html>
+<body>
+
+<h4>Data Explorer Options</h4>
+<ul>
+<li><a href="#intro">Introduction</a></li>
+<li><a href="#load">Load data</a></li>
+<li><a href="#handy">Handy menu</a></li>
+<li><a href="#active">Activate data</a></li>
+<li><a href="#remove">Remove data</a></li>
+<li><a href="#append">Append plot to graph</a></li>
+<li><a href="#new">Create new plot</a></li>
+<li><a href="#freeze">Freeze theory</a></li>
+<li><a href="#send">Send data to applications</a></li>
+</ul>
+
+<h5><a name="intro"><font color="blue">Introduction</font></a></h5>
+<p> 
+<b>Data Explorer</b> is a panel that allows the user more interactions with
+data. Some functionalities provided by the Data Explorer are also available
+through the context menu of plot panels or other menus of the applications.Under 
+menu <b>View</b> of the menubar, Data explorer can be toggled between Show and Hide 
+by clicking the menu <b>Show/Hide Data Explorer</b>. 
+</p>
+<p><b><font size=2>IMPORTANT!</font></b> When Data explorer is hidden, all the data loaded will
+be sent directly to the current active application, if possible. When data Explorer is shown
+data go first to the Data Explorer for the user to handle them later.
+</p>
+
+<h5><a name="load"><font color="blue">Load data</font></a></h5>
+<p>
+To Load data, click the button <b>Load Data</b>, then select one or more (holding Ctrl key)
+files to load into the application. In
+the list, the <b>Data</b> will be displayed as the name
+of each selected file.
+ Expending this data by clicking the <b>+</b> symbol
+will display available information about the data such as data title if exists.
+</p>
+
+
+<h5><a name="handy"><font color="blue">Handy menu</font></a></h5>
+<p>
+For a quick Data-info/Save/Plot/3d-plot(2d only)/Edit-mask(2d only), high-light the data/theory,
+ right-click, and select a proper item from the context menu.
+ <br>
+<img src="hand_menu.png"/>
+</p>
+
+<h5><a name="active"><font color="blue">Activate data</font></a></h5>
+<p>
+To interact with data, check a data label and click on a button. Checking Data 
+make them active  for the button operation. Unchecking Data labels will
+deactivate them.
+</p>
+<p>
+There is a combo box labeled <b> Selection Options</b> that allows to activate 
+or select multiple data simultaneously. 
+</p>
+
+<h5><a name="remove"><font color="blue">Remove data</font></a></h5>
+<p>
+Remove data button  remove all reference of this data into the application.
+</p>
+<p>
+<font size=2><b>WARNING!</b></font> Remove data will stop any jobs 
+currently using the selected data.
+</p>
+
+<h5><a name="append"><font color="blue">Append plot to graph</font></a></h5>
+<p>
+Click on the button <b>Append To</b> to append selected Data to a plot panel on
+focus. Next to this button is a combo box containing available panels names. 
+Selecting a name from this combo box will set  the corresponding lot panel on 
+focus. If not plot panel is available, the combo box and button will be disable.
+2D Data cannot be appended to any plot panels . This operation can only be 
+performed on 1D data and plot panels currently containing 1D data.
+</p>
+
+<h5><a name="new"><font color="blue">Create new plot</font></a></h5>
+<p>
+Click on <b>New Plot</b> button to create a new plot panel where selected data 
+will be plotted.
+</p>
+
+<h5><a name="freeze"><font color="blue">Freeze theory</font></a></h5>
+<p>
+<b>Freeze Theory</b> button generate Data from selected theory. This operation 
+can only be performed when theory labels are selected. 
+</p>
+
+<h5><a name="send"><font color="blue">Send to application</font></a></h5>
+<p>
+Click on the button <b>Send To</b> to send Data to the current active control page.
+One of the single/batch mode can be selected only for Fitting. The batch mode provides
+serial (batch) fitting with one model, i.e., fitting one data by another data.
+Note that only the Fitting allows more that one data to be sent.
+
+</p>
+
+</body>
+</html>
Index: src/sas/guiframe/media/data_explorer_help.rst
===================================================================
--- src/sas/guiframe/media/data_explorer_help.rst	(revision 23a9beb149c5d0f661ae1295aede00e83e311057)
+++ src/sas/guiframe/media/data_explorer_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
@@ -1,139 +1,3 @@
-.. data_explorer_help.rst
+..data_explorer_help.rst
 
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-Loading Data
-============
-
-Introduction_
-
-Load_Data_
-
-Handy_Menu_
-
-Activate_Data_
-
-Remove_Data_
-
-Append_Plot_to_Graph_
-
-Create_New_Plot_
-
-Freeze_Theory_
-
-Send_Data_to_Applications_
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Introduction:
-
-Introduction
-------------
-
-*Data Explorer* is a panel that allows the user more interactions with data. 
-Some functionalities provided by the Data Explorer are also available through 
-the context menu of plot panels or other menus of the applications.Under menu 
-*View*  of the menubar, Data explorer can be toggled between Show and Hide by 
-clicking the menu *Show/Hide Data Explorer* .
-
-*IMPORTANT!*  When Data explorer is hidden, all the data loaded will be sent 
-directly to the current active application, if possible. When data Explorer is 
-shown data go first to the Data Explorer for the user to handle them later.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Load_Data:
-
-Load Data
----------
-
-To Load data, click the button *Load Data* , then select one or more (holding 
-Ctrl key) files to load into the application. In the list, the *Data*  will be 
-displayed as the name of each selected file. Expending this data by clicking 
-the *+*  symbol will display available information about the data such as data 
-title if exists.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Handy_Menu:
-
-Handy Menu
-----------
-
-For a quick Data-info/Save/Plot/3d-plot(2d only)/Edit-mask(2d only), 
-high-light the data/theory, right-click, and select a proper item from the 
-context menu.
-
-.. image:: hand_menu.png
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Activate_Data:
-
-Activate Data
--------------
-
-To interact with data, check a data label and click on a button. Checking Data 
-make them active for the button operation. Unchecking Data labels will 
-deactivate them.
-
-There is a combo box labeled *Selection Options*  that allows to activate or 
-select multiple data simultaneously.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Remove_Data:
-
-Remove Data
------------
-
-Remove data button remove all reference of this data into the application.
-
-*WARNING!* Remove data will stop any jobs currently using the selected data.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Append_Plot_to_Graph:
-
-Append Plot to Graph
---------------------
-
-Click on the button *Append To*  to append selected Data to a plot panel on 
-focus. Next to this button is a combo box containing available panels names. 
-Selecting a name from this combo box will set the corresponding lot panel on 
-focus. If not plot panel is available, the combo box and button will be 
-disable. 2D Data cannot be appended to any plot panels . This operation can 
-only be performed on 1D data and plot panels currently containing 1D data.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Create_New_Plot:
-
-Create New Plot
----------------
-
-Click on *New Plot*  button to create a new plot panel where selected data 
-will be plotted.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Freeze_Theory:
-
-Freeze Theory
--------------
-
-*Freeze Theory*  button generate Data from selected theory. This operation can 
-only be performed when theory labels are selected.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Send_Data_to_Applications:
-
-Send to Application
--------------------
-
-Click on the button *Send To*  to send Data to the current active control 
-page. One of the single/batch mode can be selected only for Fitting. The batch 
-mode provides serial (batch) fitting with one model, i.e., fitting one data by 
-another data. Note that only the Fitting allows more that one data to be sent.
+Placeholder for data explorer help
Index: src/sas/guiframe/media/graph_help.rst
===================================================================
--- src/sas/guiframe/media/graph_help.rst	(revision 98b30b46ac241d857a5698740991daae2c25c3c2)
+++ src/sas/guiframe/media/graph_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
@@ -1,359 +1,3 @@
-.. graph_help.rst
+..graph_help.rst
 
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-Plotting Data/Models
-====================
-
-Graph_Menu_
-
-2D_Data_Averaging_
-
-Key_Sequences_
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Graph_Menu:
-
-Graph Menu
-----------
-
-Invoking_the_Graph_Menu_
-
-Reset_Graph_
-
-Hide_Show_Delete_Graph_
-
-Data_Info_
-
-Save_Plot_Image_
-
-Save_Data_
-
-Drag_Plot_
-
-Zoom_In_Out_
-
-Remove_Data_from_Plot_
-
-Change_Scale_
-
-Linear_Fit_
-
-Other_Graph_Modifications_
-
-.. _Invoking_the_Graph_Menu:
-
-Introduction
-------------
-
-Locating the pointer and right-clicking on a data/theory plot will bring a 
-context menu. On the menu, select a menu item.
-
-.. _Reset_Graph:
-
-Reset Graph
------------
-
-To reset the graph's axis range, right click on the plot and the context menu 
-pops-up. Select *Reset Graph*  and the plot will take its initial range. Also 
-the 'home' icon in tool bar will do the same.
-
-.. _Hide_Show_Delete_Graph:
-
-Hide/Show/Delete Graph
-----------------------
-
-To Hide, click the Hide (bar) button in the tool bar.To Show, select the the 
-'Show' menu item in the 'Graph' menu in the menu bar.To Delete, click the 'x' 
-button in the title bar.
-
-Note: If a residuals graph (in Fitting) is hidden, it will not show up after 
-computation.
-
-.. _Data_Info:
-
-Data Info
----------
-
-From the context menu, select 'Data Info' to see the data information dialog
-panel.
-
-.. _Save_Plot_Image:
-
-Save Plot Image
----------------
-
-Right click on plot. Context menu will pop-up select save image [file name].
-A dialog window opens and write a the name of the file to save and click on 
-*Save Image.*
-
-.. _Save_Data:
-
-Save Data
----------
-
-From the context menu, select 'Save points as a file' for 1D, or 'Save as a 
-file(DAT)' for 2D. Note that two formats, txt and xml, are available in 1D 
-saving.
-
-.. _Drag_Plot:
-
-Drag Plot
----------
-
-Select the *crossed arrows*  button on the plot panel *toolbar*  to drag the 
-plot. To disable dragging mode, unselect the same button on the toolbar.
-
-.. _Zoom_In_Out:
-
-Zoom In/Out
------------
-
-Select the *rectangle*  button on the plot panel *toolbar*  to zoom in a
-region of the plot.
-
-To disable zoom mode, unselect the same button on the toolbar. After zoom in
-a region, select *left arrow*  or *right arrow*  button on the toolbar to set
-the graph the the previous size. If a mouse wheel button is available,
-*zoom in/out*  by scrolling the mouse wheel (see Key_Sequences_ help for
-details).
-
-.. _Remove_Data_from_Plot:
-
-Remove Data from Plot
----------------------
-
-Highlight the plot and the context menu appears.Select *remove [file name]*.
-The plot selected will disappear.
-
-.. _Change_Scale:
-
-Change Scale
-------------
-
-If the loaded data is a 1-D data changing scale or data representation will 
-work as follows. *Right click* on the plot window. A context menu pops-up and 
-select *Change Scale* . A dialog window titled *select the scale of the graph* 
-will pop-up then change the *x* , the *y*  and the *view*  values as wish.
-
-The 'view' option includes the axis scale short-cuts such as Linear, Guinier, 
-Cross-sectional (XC) Guinier, and Porod plot scale. For a proper data set, 
-these axis scales can be used to estimate Rg, Rod diameter, or Background of 
-neutron scattering data respectively (via 'Linear Fit'; see below). For a 2D 
-image, *Right click*  on the image to pop-up the context menu. Select to 
-switch from linear to log scale. The scale selected is printed on the status 
-bar.
-
-If the loaded data is an image. *Right click*  on the image to pop-up the
-context menu. Select to switch from linear to log scale. The scale selected is
-printed on the status bar.
-
-.. _Linear_Fit:
-
-Linear Fit
-----------
-
-Linear fit is to perform a line model fitting keeping the scale of the plot.
-Highlight data to fit. From the context menu select *Linear Fit* . A dialog
-window appears. Change model initial parameters, data limits and hit *fit*
-button. New parameters values are displayed and the line with the new
-parameters is added to the plot. Especially for Guinier, XC Guinier, and
-Porod plot scale, this 'Linear Fit' will provides Rg, Rod diameter, and
-background, respectively. The following figure shows an example for the
-Guinier scale.
-
-.. image:: guinier_fit.png
-
-.. _Other_Graph_Modifications:
-
-Other Graph Modifications
--------------------------
-
-Some custom modifications of the symbols, text, axis, etc of the graph are 
-provided.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _2D_Data_Averaging:
-
-2D Data Averaging
------------------
-
-Principle_
-
-How_to_Average_
-
-Available_Averagings_
-
-Unmasked_Circular_Average_
-
-Masked_Circular_Average_
-
-Sector_Average_
-
-Annular_Average_
-
-Box_Sum_
-
-Box_Averaging_in_Qx_
-
-Box_Averaging_in_Qy_
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. Principle: 
-
-Principle
----------
-
-This feature allows you to perform different types of averages on your data, 
-and allows you to see what regions of the detector will contribute to the 
-average. The region to be averaged will be drown and can be modified by 
-dragging the lines around.
-
-.. _How_to_Average:
-
-How to Average
---------------
-
-Right click on 2D data for the context menu to appear. Select one type of 
-averages among *"sector [Q view]", "Annulus [Phi view]", "Box sum", "Box 
-averaging in Qx ", "box averaging on Qy","Perform circular Average".*
-
-A slicer will appear except for *"Perform circular Average"*  that you can 
-drag by clicking on a slicer 's marker. When the marker is highlighted in red, 
-it means that the slicer can change size.You can also move some of the slicer 
-by simply drag its side when highlighted in red. the slicer size will be reset 
-to its previous size if the user try to select a region greater than the size 
-of the data.
-
-The user can also select a region to average when a slicer has been selected 
-already by *right clicking*  on the context menu and selecting *Edit Slicer 
-Parameters* . The dialog window will appears and the user can enter values to 
-selected a region or selected numbers of points to plot *nbins* .
-
-For *Box sum* , when the user selects this option, a new panel is created 
-containing the result of average of the sum of every pixels contains on that 
-data.The user can also enter values to select a region.
-
-.. _Available_Averagings:
-
-Available Averagings
---------------------
-
-Some different types of averaging are provided for.
-
-.. _Unmasked_Circular_Average:
-
-Unmasked Circular Average
--------------------------
-
-This operation will perform and average in constant q-rings around the (x,y) pixel
-location of the beam center.
-
-.. _Masked_Circular_Average:
-
-Masked Circular Average
------------------------
-
-This operation is same as 'Masked Circular Average' except that the masked
-region is excluded if masked.
-
-.. _Sector_Average:
-
-Sector Average [Q View]
------------------------
-
-This operation averages in constant q-arcs. The width of the sector is specified in
-degrees (+/- delta phi) each side of the central angle (phi).
-
-.. _Annular_Average:
-
-Annular Average [Phi View]
---------------------------
-
-It performs an average between two q-values centered in (0,0), and averaged 
-over a width of a specified number of pixels. The data is returned as a 
-function of angle (phi) in degrees. Moving one circle of this slicer to 
-radius of zero corresponding to a circular averaging on radius qmax , the 
-outer circle. The angle zero starts from the positive x-axis direction.
-
-.. _Box_Sum:
-
-Box Sum
--------
-
-Perform the sum of counts in a 2D region of interest.When editing the slicer, 
-the user can enter the length and the width the rectangle slicer and the 
-coordinates of the center of this rectangle.
-
-.. _Box_Averaging_in_Qx:
-
-Box Averaging in Qx
--------------------
-
-Computes average I(Qx) for a region of interest. When editing the slicer, the 
-user can control the length and the width the rectangle slicer. The averaged 
-output is calculated from the constant bins with rectangular shape. The 
-resultant q values are nominal values, i.e., the central values of each bins 
-on the x-axis.
-
-.. _Box_Averaging_in_Qy:
-
-Box Averaging in Qy
--------------------
-
-Computes average I(Qy) for a region of interest.When editing the slicer, the 
-user can control the length and the width the rectangle slicer. The averaged 
-output is calculated from the constant bins with rectangular shape. The 
-resultant q values are nominal values, i.e., the central values of each bins 
-on the y-axis.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Key_Sequences:
-
-Key Sequences
--------------
-
-Floating_Panel_
-
-Context_Menu_
-
-Zoom_
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Floating_Panel:
-
-Floating Panel
---------------
-
-For a graph panel to float on the top of the SV window:
-
-Press the *Ctrl(Cmd on MAC) key*  on dragging and placing a panel. Or if you 
-want to make all plot panels float, select 'Float' from Graph/Preperences in 
-the menu bar. Otherwise choose 'Dock'.
-
-.. _Context_Menu:
-
-Graph Context Menu
-------------------
-
-To get the graph context menu to print, copy, save data, (2D)average, etc, 
-*locate the mouse point on the plot to highlight and *(Mouse) Right Click* 
-to bring up the full menu.
-
-.. _Zoom:
-
-Zoom In/Out
------------
-
-To Zoom in or out the full plot, *locate the mouse point inside the graph 
-which will be the center of the zooming, then *rotate MouseWheel*.
-
-*To Zoom in or out the plot in x or y direction, *locate (and click) the 
-mouse point near x (or y) axis just outside of the graph and then *rotate 
-MouseWheel* .* Note that this works only on the 1D plots.
+Placeholder for graph help
Index: src/sas/guiframe/media/key_help.html
===================================================================
--- src/sas/guiframe/media/key_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/guiframe/media/key_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,40 @@
+<html>
+<body>
+
+<h4>Key Combination</h4>
+<ul>
+<li><a href="#Float">Floating Panel</a></li>
+<li><a href="#GraphMenu">Graph Context Menu</a></li>
+<li><a href="#Zoom">Zoom In & Out</a></li>
+</ul>
+
+<h5><a name="Float">Floating Panel</a></h5>
+<p>
+<h6>For a graph panel to float on the top of the SV window:</h6></p>
+<p> Press the <b>Ctrl(Cmd on MAC) key</b> on dragging and placing a panel.
+Or if you want to make all plot panels float, select 'Float' from Graph/Preperences
+in the menu bar. Otherwise choose 'Dock'.</p>
+
+<p>
+<h5><a name="GraphMenu">Graph Context Menu</a></h5>
+<p>
+<h6>To get the graph context menu to print, copy, save data, (2D)average, etc.:</h6></p>
+<p> <b>Locate the mouse point on the plot to highlight and 
+<b>(Mouse) Right Click</b> to bring up the full menu.</p>
+
+<p>
+<h5><a name="Zoom">Zoom In and Out</a></h5>
+<p>
+<h6>To Zoom in or out the full plot:</h6></p>
+<p> <b>Locate the mouse point inside the graph which will be the center of the zooming,
+then <b>rotate MouseWheel</b>.</p>
+<p>
+<h6>To Zoom in or out the plot in x or y direction:</h6></p>
+<p> <b>Locate (and click) the mouse point near x (or y) axis just outside of the graph 
+and then <b>rotate MouseWheel</b>.</p>
+<p> Note that this works only on the 1D plots.</p>
+
+
+</body>
+</html>
+
Index: src/sas/invariant/media/invariant_help.rst
===================================================================
--- src/sas/invariant/media/invariant_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
+++ src/sas/invariant/media/invariant_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
@@ -0,0 +1,3 @@
+..invariant_help.rst
+
+Placeholder for invariant help
Index: src/sas/invariant/media/pr_help.rst
===================================================================
--- src/sas/invariant/media/pr_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
+++ src/sas/invariant/media/pr_help.rst	(revision 0d66541cf69270c2b833e4f21df2f2d3fed2cd9c)
@@ -0,0 +1,3 @@
+..pr_help.rst
+
+Placeholder for P(r) help
Index: src/sas/models/media/model_functions.rst
===================================================================
--- src/sas/models/media/model_functions.rst	(revision 98b30b46ac241d857a5698740991daae2c25c3c2)
+++ src/sas/models/media/model_functions.rst	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -82,5 +82,5 @@
 Contents
 --------
-1. Background_
+1. Introduction_
 
 2. Model_ Functions
@@ -99,7 +99,7 @@
 
 
-.. _Background:
-
-1. Background
+.. _Introduction:
+
+1. Introduction
 ---------------
 
Index: src/sas/models/media/pd_help.html
===================================================================
--- src/sas/models/media/pd_help.html	(revision fd5ac0db8089df5bd882587f157d4bf317cfcf67)
+++ src/sas/models/media/pd_help.html	(revision fd5ac0db8089df5bd882587f157d4bf317cfcf67)
@@ -0,0 +1,182 @@
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
+<meta name=Generator content="Microsoft Word 12 (filtered)">
+
+</head>
+
+<body lang=EN-US>
+
+<div class=WordSection1>
+
+<p class=MsoNormal><h3><span style='font-family:"Times New Roman","serif"'>Polydisperisty
+and Angular Distributions</span></h3></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>Calculates
+the form factor for a polydisperse and/or angular population of particles with
+uniform scattering length density. The resultant form factor is normalized by
+the average particle volume such that P(q) = scale*&lt;F*F&gt;/Vol + bkg, where
+F is the scattering amplitude and the &lt; &gt; denote an average over the size
+distribution.  Users should use PD (polydispersity: this definition is different from the typical definition in polymer science) 
+for a size distribution and Sigma for an
+angular distribution (see below).</span></p>
+<p> Note that this computation is very time intensive thus applying polydispersion/angular distrubtion for 
+more than one paramters or increasing Npts values might need extensive patience to complete the computation. Also
+note that even though it is time consuming, it is safer to have larger values of Npts and Nsigmas.</p>
+
+<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt'><span
+style='font-family:"Times New Roman","serif"'>The following five distribution
+functions are provided;</span></p>
+<ul>
+<li><a href="#Rectangular">Rectangular distribution</a></li>
+<li><a href="#Array">Array distribution</a></li>
+<li><a href="#Gaussian">Gaussian distribution</a></li>
+<li><a href="#Lognormal">Lognormal distribution</a></li>
+<li><a href="#Schulz">Schulz distribution</a></li>
+</ul>
+<p>&nbsp;</p>
+<p><a name="Rectangular"><h4>Rectangular distribution</a></h4></p>
+<p><img src="img/pd_image001.png"></p>
+<p>&nbsp;</p>
+<p>The x<sub>mean</sub> is the mean
+of the distribution, w is the half-width, and Norm is a normalization factor
+which is determined during the numerical calculation. Note that the Sigma and
+the half width <i>w</i> are different.</p>
+<p>The standard deviation is </p>
+<p><img src="img/pd_image002.png"></p>
+<p>&nbsp;</p>
+<p>The PD (polydispersity) is </p>
+<p><img src="img/pd_image003.png"></p>
+<p>&nbsp;</p>
+<p><img width=511 height=270
+id="Picture 1" src="img/pd_image004.jpg" alt=flat.gif></p>
+<p>&nbsp;</p>
+<p>&nbsp;</p>
+<p><a name="Array"><h4>Array distribution</h4></a></p>
+
+<p>This distribution is to be given
+by users as a txt file where the array should be defined by two columns in the
+order of x and f(x) values. The f(x) will be normalized by SasView during the
+computation.</p>
+
+<p>Example of an array in the file;</p>
+
+<p>30        0.1</p>
+
+<p>32        0.3</p>
+
+<p>35        0.4</p>
+
+<p>36        0.5</p>
+
+<p>37        0.6</p>
+
+<p>39        0.7</p>
+
+<p>41        0.9</p>
+
+<p'>&nbsp;</p>
+
+<p>We use only these array values in
+the computation, therefore the mean value given in the control panel, for
+example radius = 60, will be ignored.</p>
+<p>&nbsp;</p>
+
+
+<p><a name="Gaussian"><h4>Gaussian distribution</h4></a></p>
+<p>&nbsp;</p>
+
+<p><img src="img/pd_image005.png"></p>
+
+<p>&nbsp;</p>
+
+<p>The x<sub>mean</sub> is the mean
+of the distribution and Norm is a normalization factor which is determined
+during the numerical calculation.</p>
+
+<p>&nbsp;</p>
+
+<p>The PD (polydispersity) is </p>
+
+<p><img src="img/pd_image003.png"></p>
+
+<p>&nbsp;</p>
+
+<p><img width=518 height=275
+id="Picture 2" src="img/pd_image006.jpg" alt=gauss.gif></p>
+
+<p>&nbsp;</p>
+
+<p><a name="Lognormal"><h4>Lognormal distribution</h4></a></p>
+
+<p>&nbsp;</p>
+
+<p><img src="img/pd_image007.png"></p>
+
+<p>&nbsp;</p>
+
+<p>The &#956; = ln(x<sub>med</sub>),  x<sub>med</sub>
+is the median value of the distribution, and Norm is a normalization factor
+which will be determined during the numerical calculation. The median value is
+the value given in the size parameter in the control panel, for example,
+radius = 60.</p>
+
+<p >&nbsp;</p>
+
+<p>The PD (polydispersity) is given
+by &#963;,</p>
+
+<p><img src="img/pd_image008.png"></p>
+
+<p>&nbsp;</p>
+
+<p>For the angular distribution,</p>
+
+<p><img src="img/pd_image009.png"></p>
+
+<p>&nbsp;</p>
+
+<p>The mean value is given by x<sub>mean</sub>
+=exp(&#956;+p<sup>2</sup>/2).</p>
+
+<p>The peak value is given by x<sub>peak</sub>=exp(&#956;-p<sup>2</sup>).</span></p>
+
+<p>&nbsp;</p>
+
+<p><img width=450 height=239
+id="Picture 7" src="img/pd_image010.jpg" alt=lognormal.gif></p>
+
+<p>&nbsp;</p>
+
+<p>This distribution function
+spreads more and the peak shifts to the left as the p increases, requiring
+higher values of Nsigmas and Npts.</p>
+
+<p>&nbsp;</p>
+
+<p><a name="Schulz"><h4>Schulz distribution</h4></a></p>
+
+<p>&nbsp;</p>
+
+<p><img src="img/pd_image011.png"></p>
+
+<p>&nbsp;</p>
+
+<p>The x<sub>mean</sub> is the mean
+of the distribution and Norm is a normalization factor which is determined
+during the numerical calculation. </p>
+
+<p>The z = 1/p<sup>2</sup>  1.</p>
+<p>&nbsp;</p>
+
+<p>The PD (polydispersity) is </p>
+<p'><img src="img/pd_image012.png"></p>
+<p>Note that the higher PD (polydispersity)
+ might need higher values of Npts and Nsigmas. For example, at PD = 0.7 and  radisus = 60 A, 
+ Npts >= 160, and Nsigmas >= 15 at least.</p>
+ <p/>
+<p><img width=438 height=232
+id="Picture 4" src="img/pd_image013.jpg" alt=schulz.gif></p>
+
+</div>
+<br>
+</body>
Index: src/sas/models/media/polar_mag_help.html
===================================================================
--- src/sas/models/media/polar_mag_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/models/media/polar_mag_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,102 @@
+<body>
+<br>
+<p><a name="magnetic"></a><strong><span style="font-size: 14pt;"> Polarization and Magnetic Scattering</span></strong></p>
+<br>
+<br>
+The magnetic scattering is implemented in five (2D) models, SphereModel, CoreShellModel, 
+CoreMultiShellModel, CylinderModel, and ParallelepipedModel. 
+In general, the scattering length density (SLD) in each regions where the SLD (=&#946;)
+ is uniform, is a combination of the nuclear and magnetic SLDs 
+and depends on the spin states of the neutrons as follows:
+<br>
+<br>
+For magnetic scattering, only the magnetization component, <b>M</b><sub>perp</sub>, 
+perpendicular to the scattering vector <b>Q</b> contributes to the the magnetic 
+scattering length. (Figure below).
+<p>
+<img src="img/mag_vector.bmp"/>
+</p>
+<br>
+The magnetic scattering length density is then
+<p>
+<img src="img/dm_eq.gif"/>
+</p>
+<br>
+where &#947; = -1.913 the gyromagnetic ratio,  	&#956;<sub>B</sub> is the Bohr magneton, 
+r<sub>0</sub> is the classical radius of electron, 
+and <b>&#963;</b> is the Pauli spin.
+<br>
+For polarized neutron, the magnetic scattering is depending on the spin states.
+Let's consider that the incident neutrons are polarized parallel (+)/anti-parallel 
+(&#8211;) to the x' axis (See both Figures above).
+The possible out-coming states then are + and - states for both incident states.
+<br>
+ - Non-spin-flips:  	(+ +) and  	(- -)
+<br>
+ - Spin-flips:  	(+ -) and  	(- +)
+<br>
+<p>
+<img src="img/M_angles_pic.bmp"/>
+</p>
+<br>
+<br>
+Now, let's assume that the angles of the <b>Q</b> vector and the spin-axis (x') against x-axis 
+are &#966; and  &#952;<sub>up</sub>, respectively (See Figure above).
+Then, depending upon the polarization (spin) state of neutrons, the scattering length
+densities , including the nuclear scattering length density (&#946; <sub>N</sub>) are given as, for non-spin-flips,
+<p>
+<img src="img/sld1.gif"/>
+</p>
+<br>
+<br>
+for spin-flips,
+<p>
+<img src="img/sld2.gif"/>
+</p>
+<br>
+<br>
+where
+<p>
+<img src="img/mxp.gif"/>
+</p>
+<p>
+<img src="img/myp.gif"/>
+</p>
+<p>
+<img src="img/mzp.gif"/>
+</p>
+<p>
+<img src="img/mqx.gif"/>
+</p>
+<p>
+<img src="img/mqy.gif"/>
+</p>
+<br>
+<br>
+Here, the M<sub>0x</sub>, M<sub>0y</sub> and M<sub>0z</sub> are the x, y and z 
+components of the magnetization vector given in the xyz lab frame. 
+The angles of the magnetization, &#952;<sub>M</sub> and &#966;<sub>M</sub> as defined in the 
+Figure (above),
+<p>
+<img src="img/m0x_eq.gif"/>
+</p>
+<p>
+<img src="img/m0y_eq.gif"/>
+</p>
+<p>
+<img src="img/m0z_eq.gif"/>
+</p>
+<br>
+<p>
+The user input parameters are M0_sld = D<sub>M</sub>M<sub>0</sub>, Up_theta = &#952;<sub>up</sub>, 
+M_theta = &#952;<sub>M</sub>, and M_phi = &#966;<sub>M</sub>.
+The 'Up_frac_i' and 'Up_frac_f' are the ratio, (spin up) /(spin up + spin down) neutrons 
+before the sample and at the analyzer, respectively.
+</p>
+<br>
+*Note: The values of the 'Up_frac_i' and 'Up_frac_f' must be in the range between 0 and 1.
+</body>
+
+
+
+
Index: src/sas/models/media/readme.txt
===================================================================
--- src/sas/models/media/readme.txt	(revision ae00b6fc81389d82c517e414b350781698733332)
+++ src/sas/models/media/readme.txt	(revision ae00b6fc81389d82c517e414b350781698733332)
@@ -0,0 +1,13 @@
+The .rst files here are work in progress, converting the model functions help 
+file from html to restructured text.
+
+model_functions_v0.html (if present) is the help file distributed with SasView v2.2.1.
+
+model_functions-2.html (if present) is the current html generated from the 
+.rst by PyCharm.
+
+NIST_IGOR_SANS_Model_Docs_v4.10.pdf should be used as the primary reference 
+for queries about the model descriptions, NOT model_functions_v0.html.
+
+Steve King
+Feb 2015
Index: src/sas/models/media/smear_computation.html
===================================================================
--- src/sas/models/media/smear_computation.html	(revision fd5ac0db8089df5bd882587f157d4bf317cfcf67)
+++ src/sas/models/media/smear_computation.html	(revision fd5ac0db8089df5bd882587f157d4bf317cfcf67)
@@ -0,0 +1,283 @@
+
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
+<meta name=Generator content="Microsoft Word 12 (filtered)">
+
+</head>
+
+<body lang=EN-US>
+
+<div class=WordSection1>
+
+<p class=MsoNormal><span style='font-size:16.0pt;line-height:115%;font-family:
+"Times New Roman","serif"'><h4>Smear Computation </h4></span></p>
+
+
+<ul style='margin-top:0in' type=disc>
+ <li class=MsoNormal style='line-height:115%'><a href="#Slit Smear"><b>Slit Smear</b></a>
+     </li>
+ <li class=MsoNormal style='line-height:115%'><a href="#Pinhole Smear"><b>Pinhole Smear</b></a>
+	</li>
+ <li class=MsoNormal style='line-height:115%'><a href="#2D Smear"><b>2D Smear</b></a> 
+	</li>
+</ul>
+
+<p class=MsoListParagraph><span style='font-size:14.0pt;line-height:115%;
+font-family:"Times New Roman","serif"'><h5><a name="Slit Smear">Slit Smear</a></h5></span></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>The sit
+smeared scattering intensity for SAS is defined by</span></p>
+
+<p class=MsoNormal><img 
+src="img/sm_image002.gif" align=left hspace=12></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>           
+                                 ---- 1)</span><br clear=all>
+<span style='font-family:"Times New Roman","serif"'>where Norm = <span
+style='position:relative;top:15.0pt'><img 
+src="img/sm_image003.gif"></span>.</span></p>
+<br>
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>The
+functions <span style='position:relative;top:6.0pt'><img 
+src="img/sm_image004.gif"></span> and <span style='position:
+relative;top:6.0pt'><img 
+src="img/sm_image005.gif"></span> refer to the slit width weighting
+function and the slit height weighting determined at the q point, respectively.
+ Here, we assumes that the weighting function is described by a rectangular
+function, i.e.,</span></p>
+
+<p class=MsoNormal><span style='position:relative;top:7.0pt'><img 
+ src="img/sm_image006.gif">                                                                                                       
+  </span><span style='font-family:"Times New Roman","serif";position:relative;
+top:7.0pt'> ---- 2)</span></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>and </span></p>
+
+<p class=MsoNormal><span style='position:relative;top:7.0pt'><img 
+ src="img/sm_image007.gif"></span>,                                                                              
+                         <span style='font-family:"Times New Roman","serif"'> ---- 3)</span></p>
+
+<p>so that <img 
+src="img/sm_image008.gif"> <img src="img/sm_image009.gif">  for <img 
+src="img/sm_image010.gif"> and <i>u</i>. The <img src="img/sm_image011.gif"> 
+ and <img src="img/sm_image012.gif">  stand for the slit height (FWHM/2) and the slit
+width (FWHM/2) in the q space. Now the integral of Eq. (1) is simplified to</span></p>
+
+<p class=MsoNormal><img 
+src="img/sm_image013.gif" align=left hspace=12><span
+style='font-family:"Times New Roman","serif"'>                                                  
+          ---- 4)</span></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif";
+position:relative;top:20.0pt'>&nbsp;</span></p>
+
+<p class=MsoListParagraphCxSpFirst style='margin-left:0in'><b><span
+style='font-family:"Times New Roman","serif"'>Numerical Implementation of Eq.
+(4) </span></b></p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in;text-indent:-.25in'><span
+style='font-family:"Times New Roman","serif"'>1)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'>For </span><span
+style='position:relative;top:6.0pt'><img 
+src="img/sm_image012.gif"></span>= 0  <span style='font-family:
+"Times New Roman","serif"'>and </span><span style='position:relative;
+top:6.0pt'><img src="img/sm_image011.gif"></span> =
+<span style='font-family:"Times New Roman","serif"'>constant:</span></p>
+
+<p>
+<img src="img/sm_image016.gif"></p>
+
+<p> For discrete q values, at the q
+values from the data points and at the q values extended up to  q<sub>N</sub>=
+q<sub>i</sub> +  <img src="img/sm_image011.gif"> , the smeared intensity can be
+calculated approximately, </p>
+
+<p><img 
+src="img/sm_image017.gif">.                                                           
+ ---- 5)</p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
+style='position:relative;top:7.0pt'><img 
+src="img/sm_image018.gif"></span> <span style='font-family:
+"Times New Roman","serif"'>= 0 for <i>I<sub>s</sub></i> in</span> <i><span
+style='font-family:"Times New Roman","serif"'>j &lt; i</span></i><span
+style='font-family:"Times New Roman","serif"'> or<i> j&gt;N-1</i>.</span></p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
+style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in;text-indent:-.25in'><span
+style='font-family:"Times New Roman","serif"'>2)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'>For  </span><span
+style='position:relative;top:6.0pt'><img 
+src="img/sm_image012.gif"></span>= <span style='font-family:
+"Times New Roman","serif"'>constant </span> <span style='font-family:"Times New Roman","serif"'>and
+</span><span style='position:relative;top:6.0pt'><img 
+src="img/sm_image011.gif"></span> = <span style='font-family:
+"Times New Roman","serif"'>0:</span></p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
+style='font-family:"Times New Roman","serif"'>Similarly to 1), we get</span></p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'>
+<img src="img/sm_image019.gif">                                                                                        
+<span style='font-family:"Times New Roman","serif"'> ---- 6)</span></p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
+style='font-family:"Times New Roman","serif"'>for  q<sub>p</sub> = q<sub>i</sub>
+- </span><span style='position:relative;top:6.0pt'><img 
+src="img/sm_image012.gif"></span><span style='font-family:
+"Times New Roman","serif"'> and</span> <span style='font-family:"Times New Roman","serif"'>q<sub>N</sub>
+= q<sub>i</sub> + </span><span style='position:relative;top:6.0pt'><img
+ src="img/sm_image012.gif"></span>.  <span
+style='position:relative;top:7.0pt'><img 
+src="img/sm_image018.gif"></span> <span style='font-family:
+"Times New Roman","serif"'>= 0 for <i>I<sub>s</sub></i> in</span> <i><span
+style='font-family:"Times New Roman","serif"'>j &lt; p</span></i><span
+style='font-family:"Times New Roman","serif"'> or<i> j&gt;N-1</i>.</span></p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'>&nbsp;</p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in;text-indent:-.25in'><span
+style='font-family:"Times New Roman","serif"'>3)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'>For  </span><span
+style='position:relative;top:6.0pt'><img 
+src="img/sm_image011.gif"></span>= <span style='font-family:
+"Times New Roman","serif"'>constant </span> <span style='font-family:"Times New Roman","serif"'>and
+</span><span style='position:relative;top:6.0pt'><img 
+src="img/sm_image011.gif"></span> = <span style='font-family:
+"Times New Roman","serif"'>constant:</span></p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
+style='font-family:"Times New Roman","serif"'>This case, the best way is to
+perform the integration, Eq. (1), numerically for both slit height and width.
+However, the numerical integration is not correct enough unless given a large
+number of iteration, say at least 10000 by 10000 for each element of the matrix
+W, which will take minutes and minutes to finish the calculation for a set of
+typical SAS data. An alternative way which is correct for slit width &lt;&lt;
+slit hight, is used in the SASView:  This method is a mixed method that
+combines the method 1) with the numerical integration for the slit width.</span></p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'>
+</p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'>
+<img src="img/sm_image020.gif">    <span style='font-family:
+"Times New Roman","serif"'> ---- (7)</span></p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
+style='font-family:"Times New Roman","serif"'>for  q<sub>p</sub> = q<sub>i</sub>
+- </span><span style='position:relative;top:6.0pt'><img 
+src="img/sm_image012.gif"></span><span style='font-family:
+"Times New Roman","serif"'> and</span> <span style='font-family:"Times New Roman","serif"'>q<sub>N</sub>
+= q<sub>i</sub> + </span><span style='position:relative;top:6.0pt'><img
+ src="img/sm_image012.gif"></span>.  <span
+style='position:relative;top:7.0pt'><img 
+src="img/sm_image018.gif"></span> <span style='font-family:
+"Times New Roman","serif"'>= 0 for <i>I<sub>s</sub></i> in</span> <i><span
+style='font-family:"Times New Roman","serif"'>j &lt; p</span></i><span
+style='font-family:"Times New Roman","serif"'> or<i> j&gt;N-1</i>. </span></p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
+style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<p class=MsoListParagraphCxSpMiddle style='margin-left:.25in'><span
+style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<p class=MsoListParagraphCxSpLast><span style='font-size:14.0pt;line-height:
+115%;font-family:"Times New Roman","serif"'><h5><a name="Pinhole Smear">Pinhole Smear</a></h5></span></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>The
+pinhole smearing computation is done similar to the Case 2) above except that
+the weight function used was the Gaussian function, so that the Eq. 6) for this
+case becomes</span></p>
+
+<p class=MsoNormal><img src="img/sm_image021.gif"><span
+style='font-family:"Times New Roman","serif"'>   ---- (8)</span></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>For all
+the cases above, the weighting matrix <i>W</i> is calculated when the smearing
+is called at the first time, and it includes the ~ 60 q values (finely binned
+evenly) below (&gt;0) and above the q range of data in order to cover all data
+points of the smearing computation for a given model and for a given slit size.
+ The <i>Norm</i> factor is found numerically with the weighting matrix, and
+considered on <i>I<sub>s</sub></i> computation.</span></p>
+
+<p class=MsoListParagraphCxSpFirst style='margin-left:.25in'><span
+style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<p class=MsoListParagraphCxSpLast><span style='font-size:14.0pt;line-height:
+115%;font-family:"Times New Roman","serif"'><h5><a name="2D Smear">2D Smear</a></h5></span></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>The
+2D smearing computation is done similar to the 1D pinhole smearing above
+except that the weight function used was the 2D elliptical Gaussian function</span></p>
+
+<p class=MsoNormal><img src="img/sm_image022.gif"><span
+style='font-family:"Times New Roman","serif"'>     ---- (9)</span></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>In Eq
+(9), x<sub>0</sub> = qcos&#952;</span><span
+style='font-family:"Times New Roman","serif"'> and y<sub>0</sub> = qsin&#952;</span><span style='font-family:"Times New Roman","serif"'>
+, and the primed axes are in the coordinate rotated by an angle &#952;</span><span style='font-family:"Times New Roman","serif"'>
+around z-axis (below) so that x<sub>0</sub> =  x<sub>0</sub>cos&#952; + </span><span style='font-family:"Times New Roman","serif"'>y<sub>0</sub>
+sin&#952;  </span><span style='font-family:
+"Times New Roman","serif"'>and y<sub>0</sub> =  -x<sub>0</sub>sin&#952; + </span><span style='font-family:"Times New Roman","serif"'>y<sub>0</sub>
+cos&#952;.</span><span style='font-family:
+"Times New Roman","serif"'> Note that the rotation angle is zero for x-y
+symmetric elliptical Gaussian distribution</span>.
+<span style='font-family:"Times New Roman","serif"'>The  A is a
+normalization factor.</span></p>
+
+<p class=MsoNormal align=center style='text-align:center'><span
+style='font-family:"Times New Roman","serif"'><img 
+id="Object 1" src="img/sm_image023.gif"></span></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>Now we
+consider a numerical integration where each bins in </span> &#920; </span><span style='font-family:"Times New Roman","serif"'>
+and R are <b>evenly </b>(this is to simplify the equation below) distributed by
+</span>&#916;&#920; </span><span style='font-family:
+"Times New Roman","serif"'>and </span> &#916;</span><span
+style='font-family:"Times New Roman","serif"'>R, respectively, and it is
+assumed that I(x, y) is constant within the bins which in turn becomes</span></p>
+
+<p class=MsoNormal><img src="img/sm_image024.gif"></p>
+
+<p class=MsoNormal>                                                                                                                                                                                <span
+style='font-family:"Times New Roman","serif"'> ---- (10)</span></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>Since we
+have found the weighting factor on each bin points, it is convenient to
+transform x-y back to x-y coordinate (rotating it by -&#952;</span><span style='font-family:"Times New Roman","serif"'>
+around z axis).  Then, for the polar symmetric smear,</span></p>
+
+<p class=MsoNormal><img src="img/sm_image025.gif"><span
+style='position:relative;top:35.0pt'>      </span> ---- (11)</p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>where,</span></p>
+
+<p class=MsoNormal><img src="img/sm_image026.gif">,</p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>while
+for the x-y symmetric smear,</span></p>
+
+<p class=MsoNormal><img src="img/sm_image027.gif"><span
+style='font-family:"Times New Roman","serif"'>  ---- (12)</span></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>where,</span></p>
+
+<p class=MsoNormal><img src="img/sm_image028.gif"></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>Here, the
+current version of the SASVIEW uses the Eq. (11) for 2D smearing assuming that
+all the Gaussian weighting functions are aligned in the polar coordinate. </span></p>
+<p> In the control panel, the higher accuracy indicates more and finer binnng points 
+so that it costs more in time. </p>
+
+
+</div>
+
+</body>
+
Index: src/sas/perspectives/calculator/data_editor.py
===================================================================
--- src/sas/perspectives/calculator/data_editor.py	(revision b45cde35d36e3d241e3ee1427715d7ff31251ea7)
+++ src/sas/perspectives/calculator/data_editor.py	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -46,5 +46,5 @@
     
     if error is not None:
-        message += "When contacting the SasView team,"
+        message += "When contacting the DANSE team,"
         message += " mention the following:\n%s" % str(error)
     
Index: src/sas/perspectives/calculator/media/data_operator_help.html
===================================================================
--- src/sas/perspectives/calculator/media/data_operator_help.html	(revision b9a5f0eb8e8cbff8f8d934bbfa4ea18168141e13)
+++ src/sas/perspectives/calculator/media/data_operator_help.html	(revision b9a5f0eb8e8cbff8f8d934bbfa4ea18168141e13)
@@ -0,0 +1,35 @@
+<html>
+<body>
+<h4>Data Operator</h4>
+<ul>
+<li><a href="#Description">Description</a></li>
+<li><a href="#Howto">Howto?</a></li>
+</ul>
+<h5><a name="Description">Description</a></h5>
+<p>
+This dialog panel provides arithmetic operations between two data sets (the last data set could be a number): <br> 
+When the data1 and data2 are selected, their x (or qx and qy for 2D) values must match with each other.
+</p>
+
+<h5><a name="Howto">Howto?</a></h5>
+<p>
+1) Type the data name resulted from an operation.<br>
+2) Select a data/theory in the drop down menus. When the data2 is set to number,
+ type a number in the text control box. <br>
+3) Select an arithmetic operator symbol; + (for addition), - (for subtraction), 
+* (for multiplication), / (for division), and | (for combination of two data sets).
+If two data sets are not match, the operation will fail and the background 
+color of the combo box items will turn to red (WIN only).<br>
+4) If the operation is successful, hit the Apply button to make the new data.
+Then the data name will be shown up in the data box in the data explorer.<br>
+Note: The errors and warnings will be displayed at the bottom of the SasView window. 
+</p> 
+<p>
+<img src="data_oper_pic.png">
+<br>
+Data operation dialog
+</p>
+
+</body>
+
+</html>
Index: c/sas/perspectives/calculator/media/data_operator_help.rst
===================================================================
--- src/sas/perspectives/calculator/media/data_operator_help.rst	(revision 98b30b46ac241d857a5698740991daae2c25c3c2)
+++ 	(revision )
@@ -1,39 +1,0 @@
-.. data_operator_help.rst
-
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-Data Operations Tool
-====================
-
-Description
------------
-This dialog panel provides arithmetic operations between two data sets (the 
-last data set could be a number).
-
-When data1 and data2 are selected, their x (or qx and qy for 2D) value(s)
-must match with each other.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-How To
-------
-1. Type the data name resulted from an operation.
-
-2) Select a data/theory in the drop down menus. When data2 is set to number, 
-   type a number in the text control box.
-
-3) Select an arithmetic operator symbol; + (for addition), - (for subtraction), 
-   * (for multiplication), / (for division), and | (for combination of two data
-   sets).
-
-   If two data sets do not match, the operation will fail and the background color
-   of the combo box items will turn to red (WIN only).
-
-4) If the operation is successful, hit the Apply button to make the new data.
-   Then the data name will be shown up in the data box in the data explorer.
-
-Note: Any errors and warnings will be displayed at the bottom of the SasView
-window.
-
-.. image:: data_oper_pic.png
Index: src/sas/perspectives/calculator/media/density_calculator_help.html
===================================================================
--- src/sas/perspectives/calculator/media/density_calculator_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/calculator/media/density_calculator_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,33 @@
+<html>
+<body>
+<h4>Mass Density Calculator</h4>
+<ul>
+<li><a href="#Description">Description</a></li>
+<li><a href="#HowTo">HowTo?</a></li>
+</ul>
+<h5><a name="Description">Description</a></h5>
+<p>
+This tool is to calculate the mass density from the molar volume or vice versa.
+To calculate the mass density, the chemical formula and molar volume should be
+provided.
+</p>
+
+
+<h5><a name="HowTo">HowTo?</a></h5>
+<p>
+1. Molecular Formula: The chemical formula of ONE molecule or ONE atom. For mixtures,
+the ratio of the each molecules should be used; for example, (H2O)0.5(D2O)0.5.
+</p>
+<p>
+2. Select input (molar volume or mass density) from combobox. Then type in the input value.</p>
+<p>
+3. Click the 'Calculate' button to perform the calculation.
+</p>
+<p>
+4. Outputs also include the molar mass (weight) that depends only on the chemical formula
+</p>
+<p><img src="density_tutor.gif">
+</p>
+</body>
+
+</html>
Index: c/sas/perspectives/calculator/media/density_calculator_help.rst
===================================================================
--- src/sas/perspectives/calculator/media/density_calculator_help.rst	(revision ec392464eef959a5c2e87e6a72ed72fd7e947a07)
+++ 	(revision )
@@ -1,33 +1,0 @@
-.. density_calculator_help.rst
-
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-Density/Volume Calculator Tool
-==============================
-
-Description
------------
-
-This tool is to calculate the mass density from the molar volume or vice 
-versa. To calculate the mass density, the chemical formula and molar volume 
-should be provided.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-How To
-------
-
-1. Molecular Formula: The chemical formula of ONE molecule or ONE atom. For 
-mixtures, the ratio of the each molecules should be used; for example, 
-(H2O)0.5(D2O)0.5.
-
-2. Select input (molar volume or mass density) from combobox. Then type in the 
-input value.
-
-3. Click the 'Calculate' button to perform the calculation.
-
-4. Outputs also include the molar mass (weight) that depends only on the 
-chemical formula
-
-.. image:: density_tutor.gif
Index: c/sas/perspectives/calculator/media/image_viewer_help.rst
===================================================================
--- src/sas/perspectives/calculator/media/image_viewer_help.rst	(revision 920928fea8f68a5f32d02d5fc09039ae2726610b)
+++ 	(revision )
@@ -1,50 +1,0 @@
-.. image_viewer_help.rst
-
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-Image Viewer Tool
-=================
-
-Description
------------
-
-This tool loads image files and displays them as 2D (x-y coordinate against 
-counts per pixel). The plot can then can be saved, printed, and copied. The 
-plot can also be resized by dragging the corner of the panel.
-
-Supported image formats are png, bmp, gif, or jpg. (There is currently a bug in 
-the tif loader)
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-How To
-------
-
-1. Select 'Image Viewer' under the 'Tool' menu in the menubar.
-
-2. Select a file type from the drop-box at the bottom of the file dialog panel, 
-choose a file of interest, and then click the 'Open' button (see the 
-picture below).
-
-.. image:: load_image.bmp
-
-3. If the loading is successful, the image will be displayed. The file name 
-will be shown in the title bar (see the picture below).
-
-4. Some options such as saving, printing, and copying are available from the 
-menubar, or in the context-menu (by right-clicking anywhere in the plot).
-
-.. image:: pic_plot.bmp
-
-5. If the image is taken from a 2D detector, it can be converted into 2D data 
-where the z values are computed as 
-
-z = (0.299 x R) + (0.587 x G) + (0.114 x B)
-
-unless the picture file is formatted as 8-bit grey-scale tif.
-
-In the "Convert to Data" dialog, set the parameters relevant to your data and 
-then click the OK button.
-
-.. image:: pic_convert.bmp
Index: src/sas/perspectives/calculator/media/kiessig_calculator_help.html
===================================================================
--- src/sas/perspectives/calculator/media/kiessig_calculator_help.html	(revision b9a5f0eb8e8cbff8f8d934bbfa4ea18168141e13)
+++ src/sas/perspectives/calculator/media/kiessig_calculator_help.html	(revision b9a5f0eb8e8cbff8f8d934bbfa4ea18168141e13)
@@ -0,0 +1,27 @@
+<html>
+<body>
+<h4>Kiessig Thickness Calculator</h4>
+<ul>
+<li><a href="#Description">Description:</a></li>
+<li><a href="#HowTo">HowTo?</a></li>
+
+</ul>
+<h5><a name="Description">Description</a></h5>
+<p>
+This tool is to approximately estimate the thickness of a layer
+ or the diameter of particles from the Kiessig fringe in 
+ SAS/NR data, and uses the Kiessig relation;
+ thickness = 2*Pi/fringe_width.
+  
+</p>
+
+
+<h5><a name="HowTo">HowTo?</a></h5>
+<p>
+To get a rough thickness or particle size, just type the Kiessig fringe width (in the 1/A unit)
+ and click on the 'Compute' button. Then the output value will be show up in the 'Thickness' text box.</p>
+
+
+</body>
+
+</html>
Index: c/sas/perspectives/calculator/media/kiessig_calculator_help.rst
===================================================================
--- src/sas/perspectives/calculator/media/kiessig_calculator_help.rst	(revision ec392464eef959a5c2e87e6a72ed72fd7e947a07)
+++ 	(revision )
@@ -1,26 +1,0 @@
-.. kiessig_calculator_help.rst
-
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-Kiessig Thickness Calculator Tool
-=================================
-
-Description
------------
-
-This tool is to approximately estimate the thickness of a layer or the 
-diameter of particles from the Kiessig fringe in SAS/NR data, and using the 
-Kiessig relation
-
-thickness = 2*Pi/fringe_width.
-  
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-
-How To
-------
-
-To get a rough thickness or particle size, just type the Kiessig fringe width 
-(in units of 1/Angstrom) and click on the 'Compute' button. Then the output 
-value will be show up in the 'Thickness' text box.
Index: src/sas/perspectives/calculator/media/load_image_help.html
===================================================================
--- src/sas/perspectives/calculator/media/load_image_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/calculator/media/load_image_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,48 @@
+<body>
+<h4>Image Viewer</h4>
+<ul>
+<li><a href="#Description">Description</a></li>
+<li><a href="#HowTo">HowTo?</a></li>
+</ul>
+<h5><a name="Description">Description</a></h5>
+<p>
+This tool is to load image files (in the format of png, bmp, gif, jpg, or tif) 
+and to display it in the x-y coordinate (against the pixel number). The displayed plot then
+ can be saved, printed, and copied. 
+ The plot can also be resized by dragging the corner of the panel. 
+</p>
+
+
+<h5><a name="HowTo">HowTo?</a></h5>
+<p>
+1. Select 'Image Viewer' under 'Tool' menu in the menubar.
+</p>
+<p>
+2. Select a file type from the drop-box at the bottom of the file dialog panel, 
+choose a file of interest, and then click the 'Open' button (See Picture below).</p>
+<p>
+<img src="load_image.bmp">
+</p>
+<p>
+3. If the loading is successful, the image will be displayed in the x-y coordinate. 
+The file name will be shown in the title bar (See Picture below). 
+</p>
+<p>
+4. Some options such as Saving, printing, and copying are available from the menubar, 
+or in the popup-menu by right-mouse-clicking anywhere in the plot (See Picture below).
+</p>
+<p><img src="pic_plot.bmp">
+</p>
+<p>
+5. If the image is taken from a 2D detector, it can be converted to our 2D data where 
+the z values are computed by the Eq. z = 0.299R + 0.587G + 0.114B unless the picture file
+is formatted in an 8 bit Grey-Scale tif. In the "Convert to Data" dialog, users set 
+the proper values in the text boxes and then click the OK button to close and to send the data generated to the Data
+ Explorer in the SasView main window. The "Cancel" button will just close the dialog 
+ (See Picture below).
+</p>
+
+<p><img src="pic_convert.bmp">
+</p>
+<br>
+</body>
Index: src/sas/perspectives/calculator/media/pycrust_help.html
===================================================================
--- src/sas/perspectives/calculator/media/pycrust_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/calculator/media/pycrust_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,36 @@
+<html>
+<body>
+<h4>Python (PyCrust) Shell</h4>
+<ul>
+<li><a href="#description">Description</a></li>
+<li><a href="#example">Example</a></li>
+</ul>
+<h5><a name="description">Description</a></h5>
+<p>
+This is a python shell (PyCrust) provided with WxPython. 
+An editing notebook will show up when a Python file is loaded from the 'New' or 'Open' menu.
+The 'Run' menu is added for the editor to be able to compile and run the python code. 
+</p>
+<br/>
+For the details about the Python, visit the website, http://docs.python.org/tutorial/.
+<br/>
+The numpy, scipy, matplotlib, etc. are shipped with the SanView. 
+<br/>
+However, some functionalities of those packages may or may not work. 
+<br/>
+The PyCrust includes its own Help menu in the shell window.
+<br/>
+Note: Help(), Credits(), ... do not work on MAC.
+<br/>
+
+<p>
+<h5><a name="example">Example</a></h5>
+</p>
+<p>
+An example from the matplotlib gallery: 
+</p> 
+<img src="pycrust_example.bmp"/>
+
+</body>
+
+</html>
Index: c/sas/perspectives/calculator/media/python_shell_help.rst
===================================================================
--- src/sas/perspectives/calculator/media/python_shell_help.rst	(revision 920928fea8f68a5f32d02d5fc09039ae2726610b)
+++ 	(revision )
@@ -1,35 +1,0 @@
-.. python_shell_help.rst
-
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-Python Shell Tool
-=================
-
-Description 
------------
-
-This is a Python shell (PyCrust) provided with WxPython. An editing notebook 
-will show up when a Python file is loaded from the 'New' or 'Open' menu. 
-
-The 'Run' menu is added for the editor to be able to compile and run the Python 
-code.
-
-For the details about the Python, visit the website 
-http://docs.python.org/tutorial/
-
-The numpy, scipy, matplotlib, etc, libraries are shipped with SasView. However, 
-some functionalities of those packages may or may not work.
-
-PyCrust includes its own Help menu in the shell window.
-
-Note: Help() and Credits() do not work on Macs.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-Example
--------
-
-An example from the matplotlib gallery:
-
-.. image:: pycrust_example.bmp
Index: src/sas/perspectives/calculator/media/resolution_calculator_help.html
===================================================================
--- src/sas/perspectives/calculator/media/resolution_calculator_help.html	(revision b9a5f0eb8e8cbff8f8d934bbfa4ea18168141e13)
+++ src/sas/perspectives/calculator/media/resolution_calculator_help.html	(revision b9a5f0eb8e8cbff8f8d934bbfa4ea18168141e13)
@@ -0,0 +1,83 @@
+<html>
+<body>
+<h4>SAS Q Resolution Estimator</h4>
+<ul>
+<li><a href="#Description">Description</a></li>
+<li><a href="#HowTo">HowTo?</a></li>
+<li><a href="#Theory">Theory</a></li>
+<li><a href="#References">References</a></li>
+</ul>
+<h5><a name="Description">Description</a></h5>
+<p>
+This tool is to approximately estimate the resolution of Q based on the
+SAS instrumental parameter values assuming that the detector is flat 
+and vertical to the incident beam direction.
+</p>
+
+
+<h5><a name="HowTo">HowTo?</a></h5>
+<p>
+1. Select the source and source type (Monochromatic or TOF). 
+Note that the computational difference between the sources is 
+only the gravitational contribution due to the mass.</p>
+<p>
+2. Change the default values of the instrumental parameters as desired.</p>
+<p>
+3. The input formats of wavelength and its spread (=FWHM/wavelength) depend on the source type.
+<li>For monochromatic wave, the inputs are just one values as shown with the defaults.</li>
+<li>For TOF, the min and max values should be separated by "-" to describe the wavelength band range.
+Optionally, the input of the wavelength (NOT of the wavelength spread) 
+could be extended by adding "; ##" where the ## is the number 
+of the bins for the numerical integration.
+Otherwise, the default value "10" bins will be used. 
+The same number of bins will be used for the corresponding wavelength spread in either cases.</li>
+</p>
+<p>4. For TOF, the default wavelength spectrum is flat. 
+The custom spectrum file (with 2 column text: wavelength(A) vs. intensity) 
+can also be loaded by selecting "Add new" in the combobox.</p>
+<p>
+5. Once set all the input values, click the compute button. 
+Depending on computation loads the calculation time will vary.
+</p>
+<p> 
+6. 1D and 2D dQ will be displayed in the text-box at the bottom of 
+the panel. Two dimensional resolution weight distribution 
+(2D elliptical Gaussian function) will also be 
+displayed in the plot panel even if the Q inputs are outside 
+of the detector limit.
+The red lines indicate the limits of the detector (if a green lines appear (for TOF), 
+it indicates the limits of the maximum q range for the largest wavelength 
+due to the size of the detector). Note that the effect from the beam block is ignored, 
+so in the small q region near the beam block [ie., q < 2*pi*(beam block diameter) / (sample to detector distance) / lamda_min] 
+the variance is slightly under estimated.</p>
+<p>7. The summary can be accessed by clicking the 'light-bulb' icon 
+at the bottom of the SasView main window.
+</p>
+<p><img src="resolution_tutor.gif">
+</p>
+<h5><a name="Theory">Theory</a></h5>
+<p>
+The scattering wave transfer vector is by definition,
+<img src="q.gif">
+</p>
+<p>In the limit of the small angle, the variance of q in the first order approximation is</p>
+<p>
+<img src="sigma_q.gif">
+</p>
+In summary, the geometric and gravitational contributions depending on the shape of each factors can be expressed  
+as shown the table.</p>
+<p>
+<img src="sigma_table.gif">
+</p>
+<p>
+Finally, we use a Gaussian function to describe the 2D weighting distribution of the uncertainty in q.
+</p>
+<p/>
+<h5><a name="References">References</a></h5>
+<p>
+D.F.R. Mildner and J.M. Carpenter, J. Appl. Cryst. 17, 249-256 (1984).</p>
+<p>
+D.F.R. Mildner, J.M. Carpenter and D.L. Worcester, J. Appl. Cryst. 19, 311-319 (1986).</p>
+</body>
+
+</html>
Index: c/sas/perspectives/calculator/media/resolution_calculator_help.rst
===================================================================
--- src/sas/perspectives/calculator/media/resolution_calculator_help.rst	(revision ec392464eef959a5c2e87e6a72ed72fd7e947a07)
+++ 	(revision )
@@ -1,90 +1,0 @@
-.. resolution_calculator_help.rst
-
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-Q Resolution Estimator
-======================
-
-Description
------------
-
-This tool is to approximately estimate the resolution of Q based on the SAS 
-instrumental parameter values assuming that the detector is flat and vertical 
-to the incident beam direction.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-How To
-------
-
-1. Select the source and source type (Monochromatic or TOF). Note that the 
-computational difference between the sources is only the gravitational 
-contribution due to the mass.
-
-2. Change the default values of the instrumental parameters as desired.
-
-3. The input formats of wavelength and its spread (=FWHM/wavelength) depend on 
-the source type.For monochromatic wave, the inputs are just one values as shown 
-with the defaults.For TOF, the min and max values should be separated by "-" 
-to describe the wavelength band range. Optionally, the input of the wavelength 
-(NOT of the wavelength spread) could be extended by adding "; --" where the -- 
-is the number of the bins for the numerical integration. Otherwise, the 
-default value "10" bins will be used. The same number of bins will be used 
-for the corresponding wavelength spread in either cases.
-
-4. For TOF, the default wavelength spectrum is flat. The custom spectrum file 
-(with 2 column text: wavelength(A) vs. intensity) can also be loaded by 
-selecting "Add new" in the combobox.
-
-5. Once set all the input values, click the compute button. Depending on 
-computation loads the calculation time will vary.
-
-6. 1D and 2D dQ will be displayed in the text-box at the bottom of the panel. 
-Two dimensional resolution weight distribution (2D elliptical Gaussian 
-function) will also be displayed in the plot panel even if the Q inputs are 
-outside of the detector limit. The red lines indicate the limits of the 
-detector (if a green lines appear (for TOF), it indicates the limits of the 
-maximum q range for the largest wavelength due to the size of the detector). 
-Note that the effect from the beam block is ignored, so in the small q region 
-near the beam block 
-
-[ie., q<2*pi*(beam block diameter) / (sample to detector distance) / lamda_min] 
-
-the variance is slightly under estimated.
-
-7. The summary can be accessed by clicking the 'light-bulb' icon at the bottom 
-of the SasView main window.
-
-.. image:: resolution_tutor.gif
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-Theory
-------
-
-The scattering wave transfer vector is by definition
-
-.. image:: q.gif
-
-In the limit of the small angle, the variance of q in the first order 
-approximation is
-
-.. image:: sigma_q.gif
-
-In summary, the geometric and gravitational contributions depending on the 
-shape of each factors can be expressed as shown the table.
-
-.. image:: sigma_table.gif
-
-Finally, we use a Gaussian function to describe the 2D weighting distribution 
-of the uncertainty in q.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-References
-----------
-D.F.R. Mildner and J.M. Carpenter, J. Appl. Cryst. 17, 249-256 (1984)
-
-D.F.R. Mildner, J.M. Carpenter and D.L. Worcester, J. Appl. Cryst. 19, 311-319 
-(1986)
Index: c/sas/perspectives/calculator/media/sas_calculator_help.rst
===================================================================
--- src/sas/perspectives/calculator/media/sas_calculator_help.rst	(revision ec392464eef959a5c2e87e6a72ed72fd7e947a07)
+++ 	(revision )
@@ -1,146 +1,0 @@
-.. sas_calculator_help.rst
-
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-.. |beta| unicode:: U+03B2
-.. |gamma| unicode:: U+03B3
-.. |theta| unicode:: U+03B8
-.. |mu| unicode:: U+03BC
-.. |sigma| unicode:: U+03C3
-.. |phi| unicode:: U+03C6
-
-.. |equiv| unicode:: U+2261
-.. |noteql| unicode:: U+2260
-
-Generic Scattering Calculator Tool
-==================================
-
-Polarization and Magnetic Scattering
-
-Theory_ 
-GUI_ 
-PDB_Data_ 
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Theory:
-
-Theory
-------
-
-In general, a particle with a volume V can be described by an ensemble 
-containing N 3-dimensional rectangular pixels where each pixels are much 
-smaller than V. Assuming that all the pixel sizes are same, the elastic 
-scattering intensity by the particle
-
-.. image:: gen_i.gif
-
-where /beta/jand rj are the scattering length density and the position of the 
-j'th pixel respectively. And the total volume
-
-.. image:: v_j.gif
-
-for /beta/j/noteql/0 where vj is the volume of the j'th pixel (or the j'th 
-natural atomic volume (= atomic mass/natural molar density/Avogadro number) for 
-the atomic structures). The total volume V can be corrected by users. This 
-correction is useful especially for an atomic structure (taken from a pdb file) 
-to get the right normalization. Note that the /beta/j displayed in GUI may be 
-incorrect but will not affect the scattering computation if the correction of 
-the total volume is made. The scattering length density (SLD) of each pixel 
-where the SLD is uniform, is a combination of the nuclear and magnetic SLDs and 
-depends on the spin states of the neutrons as follows:For magnetic scattering, 
-only the magnetization component, *M*perp, perpendicular to the scattering 
-vector *Q* contributes to the the magnetic scattering length. (Figure below).
-
-.. image:: mag_vector.bmp
-
-The magnetic scattering length density is then
-
-.. image:: dm_eq.gif
-
-where /gamma/= -1.913 the gyromagnetic ratio, /mu/B is the Bohr magneton, r0 is 
-the classical radius of electron, and */sigma/* is the Pauli spin.
-
-For polarized neutron, the magnetic scattering is depending on the spin states.
-
-Let's consider that the incident neutrons are polarised parallel (+)/ 
-anti-parallel (-) to the x' axis (See both Figures above). The possible 
-out-coming states then are + and - states for both incident states, where 
-
-- Non-spin flips: (+ +) and (- -)
-- Spin flips:     (+ -) and (- +)
-
-.. image:: gen_mag_pic.bmp
-
-Now, let's assume that the angles of the *Q*  vector and the spin-axis (x') 
-from x-axis are /phi/ and /theta/up respectively (See Figure above). Then, 
-depending upon the polarization (spin) state of neutrons, the scattering 
-length densities, including the nuclear scattering length density (/beta/N) 
-are given as, for non-spin-flips
-
-.. image:: sld1.gif
-
-and for spin-flips
-
-.. image:: sld2.gif
-
-where
-
-.. image:: mxp.gif
-
-.. image:: myp.gif
-
-.. image:: mzp.gif
-
-.. image:: mqx.gif
-
-.. image:: mqy.gif
-
-Here, the M0x, M0yand M0zare the x, y and z components of the magnetisation 
-vector given in the xyz lab frame. 
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _GUI:
-
-GUI
----
-
-.. image:: gen_gui_help.bmp
-
-After the computation, the result will be listed in the 'Theory' box in the 
-data explorer panel on the main window.The 'Up_frac_in' and 'Up_frac_out' are 
-the ratio, (spin up) /(spin up + spin down) neutrons before the sample and at 
-the analyzer, respectively.
-
-*Note I: The values of 'Up_frac_in' and 'Up_frac_out' must be in the range 
-between 0 and 1. For example, both values are 0.5 for unpolarized neutrons.*
-
-*Note II: This computation is totally based on the pixel (or atomic) data 
-fixed in the xyz coordinates. Thus no angular orientational averaging is 
-considered.*
-
-*Note III: For the nuclear scattering length density, only the real component 
-is taken account.*
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _PDB_Data:
-
-PDB Data
---------
-
-This Generic scattering calculator also supports some pdb files without 
-considering polarized/magnetic scattering so that the related parameters 
-such as Up_*** will be ignored (see the Picture below). The calculation for 
-fixed orientation uses (the first) Equation above resulting in a 2D output, 
-whileas the scattering calculation averaged over all the orientations uses 
-the Debye equation providing a 1D output
-
-.. image:: gen_debye_eq.gif
-
-where vj /beta/j /equiv/ bj the scattering length of the j'th atom. The resultant outputs 
-will be displayed in the DataExplorer for further uses.
-
-.. image:: pdb_combo.jpg
Index: src/sas/perspectives/calculator/media/sld_calculator_help.html
===================================================================
--- src/sas/perspectives/calculator/media/sld_calculator_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/calculator/media/sld_calculator_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,42 @@
+<html>
+<body>
+<h4>Scattering Length Density (SLD) Calculator</h4>
+<ul>
+<li><a href="#SLD_calculator">Description</a></li>
+<li><a href="#How to use">How to format the compound name?</a></li>
+</ul>
+<h5><a name="SLD_calculator">Description</a></h5>
+<p>
+The neutron scattering length density is defined as: <br> 
+SLD = (b_c1 +b_c2+...+b_cn )/Vm  <br> where b_ci is the bound coherent scattering length of ith of 
+n atoms in a molecule with the molecular volume Vm
+</p>
+
+
+<h5><a name="How to use">How to format the compound name?</a></h5>
+<p>
+To calculate scattering length densities enter a compound and
+a mass density and click "Calculate". Enter a wavelength value is optional and its default 
+value will be 6.0A.
+</p> 
+<p>
+<ul>
+<li>Formula strings consist of counts and atoms such as "CaCO3+6H2O".</li>
+<li>Groups can be separated by <b>'+'</b> or <b>space</b>, so "CaCO3 6H2O" works as well.</li>
+<li>Groups and be defined using parentheses, such as "CaCO3(H2O)6".</li>
+<li>Parentheses can nest: "(CaCO3(H2O)6)1".</li>
+<li>Isotopes are represented by index, e.g., "CaCO[18]3+6H2O".</li>
+More examples: H[1], H[2].
+<li>Counts can be integer or decimal, e.g. "CaCO3+(3HO0.5)2".</li>
+Other compositions can be calculated as well,<br>
+for example a 70-30 mixture of H2O/D2O can be written as <b>H14O7+ D6O3</b><br>
+or more simply <b>H7D3O5 <\b>(i.e. 7 hydrogens, 3 deuteriums, and 5 oxygens)<br>
+and the mass density calculated based on the percentages of H and D. 
+Type for example "C[13]6 H[2]12 O[18]6" for C(13)6H(2)12O(18)6 (6 Carbon-13 atoms, 12 deuterium atoms, and 6 Oxygen-18 atoms) 
+
+</ul>
+</p>
+
+</body>
+
+</html>
Index: c/sas/perspectives/calculator/media/sld_calculator_help.rst
===================================================================
--- src/sas/perspectives/calculator/media/sld_calculator_help.rst	(revision ec392464eef959a5c2e87e6a72ed72fd7e947a07)
+++ 	(revision )
@@ -1,53 +1,0 @@
-.. sld_calculator_help.rst
-
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-.. |Ang| unicode:: U+212B
-
-SLD Calculator Tool
-===================
-
-Description
------------
-
-The neutron scattering length density is defined as
-
-SLD = (b_c1 + b_c2 + ... + b_cn) / Vm
-
-where 
-
-b_ci is the bound coherent scattering length of ith of n atoms in a molecule 
-with the molecular volume Vm
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-How to Format the Compound Name
--------------------------------
-
-To calculate scattering length densities enter the empirical formula of a 
-compound and its mass density and click "Calculate".
-
-Entering a wavelength value is optional (a default value of 6.0 |Ang| will 
-be used).
-
-*  Formula strings consist of atoms and the number of them, such as "CaCO3+6H2O".
-
-*  Groups can be separated by *'+'* or *space*, so "CaCO3 6H2O" works as well.
-
-*  Groups can be defined using parentheses, such as "CaCO3(H2O)6".
-
-*  Parentheses can be nested, such as "(CaCO3(H2O)6)1".
-
-*  Isotopes are represented by their atomic number in *square brackets*, such 
-   as "CaCO[18]3+6H2O", H[1], or H[2].
-
-*  Numbers of atoms can be integer or decimal, such as "CaCO3+(3HO0.5)2".
-
-*  The SLD of mixtures can be calculated as well. For example, for a 70-30 
-   mixture of H2O/D2O write "H14O7+D6O3" or more simply "H7D3O5" (i.e. this says
-   7 hydrogens, 3 deuteriums, and 5 oxygens) and enter a mass density calculated
-   on the percentages of H2O and D2O.
-
-*  Type "C[13]6 H[2]12 O[18]6" for C(13)6H(2)12O(18)6 (6 Carbon-13 atoms, 12 
-   deuterium atoms, and 6 Oxygen-18 atoms).
Index: src/sas/perspectives/calculator/media/slit_calculator_help.html
===================================================================
--- src/sas/perspectives/calculator/media/slit_calculator_help.html	(revision b9a5f0eb8e8cbff8f8d934bbfa4ea18168141e13)
+++ src/sas/perspectives/calculator/media/slit_calculator_help.html	(revision b9a5f0eb8e8cbff8f8d934bbfa4ea18168141e13)
@@ -0,0 +1,33 @@
+<html>
+<body>
+<h4>Slit Size Calculator</h4>
+<ul>
+<li><a href="#Description">Description:</a></li>
+<li><a href="#HowTo">HowTo?</a></li>
+<li><a href="#Note">Note</a></li>
+</ul>
+<h5><a name="Description">Description</a></h5>
+<p>
+This tool is for X-ray users to calculate the slit size (FWHM/2) 
+for smearing  based on their half beam profile data (SAXSess). 
+</p>
+
+
+<h5><a name="HowTo">HowTo?</a></h5>
+<p>
+To calculate the slit size (FWHM/2), just load the beam profile data using the browse button. </p>
+<p>
+Once a data is loaded, the slit size will be computed and show up in the text box. </p>
+<p>
+Because the unit is not specified in the data file, we do not convert it into 1/A so that users are responsible for converting the unit.
+</p>
+
+<h5><a name="Note">Note: </a></h5>
+This slit size calculator is working only for a beam profile data produced by 'SAXSess'. 
+
+<p>
+To see the file format, check the file, 'beam profile.DAT', in the 'test' folder of SasView. 
+</p>
+</body>
+
+</html>
Index: c/sas/perspectives/calculator/media/slit_calculator_help.rst
===================================================================
--- src/sas/perspectives/calculator/media/slit_calculator_help.rst	(revision ec392464eef959a5c2e87e6a72ed72fd7e947a07)
+++ 	(revision )
@@ -1,31 +1,0 @@
-.. slit_calculator_help.rst
-
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-Slit Size Calculator Tool
-=========================
-
-Description
------------
-This tool is for X-ray users to calculate the slit size (FWHM/2) for smearing 
-based on their half beam profile data (SAXSess).
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-How To
--------
-To calculate the slit size (FWHM/2), just load the beam profile data using the 
-browse button.
-
-Once a data is loaded, the slit size will be computed and show up in the text 
-box.
-
-Because the unit is not specified in the data file, we do not convert it into 
-1/Angstrom so  users are responsible for converting the units of their data.
-
-Note: This slit size calculator only works for beam profile data produced by 
-'SAXSess'.
-
-To see the file format, check the file, 'beam profile.DAT', in the 'test' 
-folder of SasView.
Index: src/sas/perspectives/fitting/media/batch_help.html
===================================================================
--- src/sas/perspectives/fitting/media/batch_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/fitting/media/batch_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,177 @@
+<html>
+<head>
+</head>
+
+
+<body>
+<h4> Batch Fit </h4>
+
+<ul>
+<li><a href="#fitpage">Batch Fit</a></li>
+<li><a href="#batchwindow">Batch Window</a></li>
+</ul>
+
+<h5><font color="blue"><a name="fitpage">Batch Fit</a></font></h5>
+<p>
+Create <b>Batch Page </b> by selecting <b>Batch </b> radio button on 
+Data Explorer<font color="blue"><a href="#batch_button">(see figure below)</a></font>
+and for a new control page select 'New FitPage' in the 'Fitting' menubar.<br />
+</p>
+<br /><img src="batch_button_area.bmp" /><br /><br />
+<a name="figure1"><u>Figure 1: MenuBar</u></a><br />
+<br />
+Load Data to Data Explorer if not loaded. <br/>
+Select one or more data sets by checking the check boxes, and then make sure 
+that "Fitting" is selected in the dropdown menu next to the "Send To" button.
+Once ready, click the 'Send To' button to set data to a BatchPage. If already an empty batch page exists, it will be set there.
+Otherwise it will create a new Batch Page.
+Set up the model and the parameter values as same as a single fitting <font color="blue"><a href="single_fit_help.html">(see single fit help)</a></font>.
+The use 'Fit' button to perform the fitting.
+<br />Unlike a single fit, the results of the fittings will not return to the BatchPage'. Instead, a Grid window will be provided once the fitting is completed. 
+The Grid window is also accessible from the 'View' menu <font color="blue"><a href="#figure2">(see Figure 2)</a></font>. 
+<br /> Note that only one model is used for all the data. 
+The initial parameter values given in the control page will be used all the data fittings. If one wants the FitEngine to use the initial values 
+from the results of the previous data fitting (if any), choose the 'Chain Fitting' in the Fitting menubar, which will speed up the fitting 
+especially when you have lots of, and similar, data sets.
+</p>
+
+<h5><font color="blue"><a name="batchwindow">Batch Window</a></font></h5>
+<p>
+Batch Window provides an easy way to view the fit results, i.e., plot data, fits, and residuals.
+Batch window will be automatically shown after a batch fit is finished. <br />
+Once closed, 
+it can be opened anytime from the "View" menubar item <font color="blue"><a href="#figure2">(see Figure 2)</a></font>.<br />
+</p>
+<br /><br /><img src="restore_batch_window.bmp" /><br /><br />
+<a name="#figure2"><u>Figure 2: Edit Menu</u></a><br />
+<br />
+  <ul>
+	<li> <a href="#edit_grid"> Edit Grid </a></li>
+	<li><a href="#save_grid"> Save Grid </a></li>
+	<li><a href="#load_batch"> Open Batch Results </a></li>
+	<li><a href="#plot"> Plot </a></li>
+	<li><a href="#view"> View Column/Cell(s) </a></li>
+   </ul>
+
+
+
+<h5><font color="blue"><a name="edit_grid"> Edit Grid </a></font></h5>
+<p>
+Once a batch fit is completed, all fitted and fixed model parameters are displayed to the current sheet of
+the batch window except the errors of the parameters. To view the errors, 
+click on a given column then under <b> Edit </b> menubar item, and insert the desired parameter by selecting 
+a menu item with the appropriated label. Empty column can be inserted in the same way.
+A column value can be customized by editing an existing empty column.<br />
+To Remove column from the grid, select it, choose edit menu, and click the <b> 'remove' </b>  menu item.
+Any removed column should reinserted whenever needed.<br />
+All above options are also available when right clicking on a given column label 
+<font color="blue"><a href="#figure3">(see Figure 3)</a></font>.
+<b>Note:</b> A column always needs to be selected in order to remove or insert a column in the grid.<br /><br />
+
+<img src="edit_menu.bmp" /><br /><br />
+<a name="figure3"><u>Figure 3: Edit Menu</u></a><br />
+</p>
+
+
+<h5><font color="blue"><a name="save_grid"> Save Grid </a></font></h5>
+<p>
+To save the current page on the batch window, select the <b> 'File' </b> menubar item 
+<font color="blue"><a href="#figure4">(see Figure 4)</a></font>, then choose the <b> 'Save as' </b>
+menu item to save it as a .csv file. <br />
+<b>Note: </b> The grid doesn't save the data array, fits, and the array residuals. As a result, the 'View (fit) Results' functionality 
+will be lost  when reloading the saved file.<br />
+
+<font color="red">Warning! To ensure accuracy of saved fit results, It is recommended to save the current grid 
+before modifying it . </font>
+</p>
+
+
+<h5><font color="blue"><a name="load_batch"> Open Batch Results </a></font></h5>
+<p>
+Any <b> csv </b> file can be opened in the grid by selecting the <b> 'Open' </b> 
+under the <b> 'File' </b> menu in the Grid Window <font color="blue"><a href="#figure4">(see Figure 4)</a></font>. 
+All columns in the file will be displayed but insertion will not available. 
+Insertion will be available only when at least one column will be
+removed from the grid.
+
+<br /><img src="file_menu.bmp" /><br /><br />
+<a name="figure4"><u>Figure 4: MenuBar</u></a><br />
+</p>
+
+
+<h5><font color="blue"><a name="plot"> Plot </a></font></h5>
+<p>
+To <b> plot </b> a column versus another,
+select one column at the time, click the <b> 'Add' </b> button next to the text control
+ of X/Y -axis <b> Selection Range </b>
+to plot the value of this column on the X/Y axis. Alternatively, all available range can be selected by clicking the column letter (eg. B).
+Repeat the same procedure the next axis. Finally, click the <b> 'Plot' </b> button. 
+When clicking on <b> Add </b> button, the grid
+will automatically fill the axis label, but  different labels and units can be 
+entered  in the correct controls before clicking 
+on the plot button.<br />
+<b>X/Y -Axis Selection Range </b> can be edited manually. These text controls 
+allows the following types of expression:<br />
+
+operation can be <font color="#00CC33"><b>+</b></font>,<font color="#00CC33">
+<b> -</b></font>, <font color="#00CC33"><b>*</b></font>, 
+<font color="#00CC33"><b>/</b></font>, or <font color="#00CC33">pow</font>.<br /> <br />
+
+1) if the current axis label range is a function of 1 or more columns,
+ write this type of expression: <br />
+constant1  * <font color="#CC9933">column_name1</font>
+<font color="blue">[minimum row index :  maximum  row index]</font> 
+<font color="#00CC33">operator</font>  constant2 <font color="#00CC33">
+<b>*</b></font> <font color="#CC9933">column_name2</font>
+<font color="blue">[minimum row index :  maximum  row index]</font> <br />
+Example : <font color="#CC9933">radius</font>[2 : 5]<font color="#00CC33"><big><
+b> -</b></big></font> 3 <font color="#00CC33"><b>*</b></font>
+ <font color="#CC9933">scale</font>[2 : 5] <br /><br />
+
+2) if only some values of a given column are need but the range between 
+the first row and the last row used is not continuous,<br />write
+the following expression in the text control: <br />
+<font color="#CC9933">column_name1</font>
+<font color="blue">[minimum row index1 :  maximum  row index1]</font>
+<font color="#00CC33"><big><b> , </b></big></font> 
+<font color="#CC9933">column_name1</font>
+<font color="blue">[minimum row index2 :  maximum  row index2]</font> <br />
+Example : <font color="#CC9933">radius </font><font color="blue"> [2 : 5] </font>
+<font color="#00CC33"><big><b> , </b></big></font><font color="#CC9933">radius </font>
+ <font color="blue">[10 : 25] </font><br /><br />
+
+
+<b>Note: </b>Both text controls ( X and Y-axis Selection Ranges) need to be filled 
+with valid entries for plotting to work (the dY-bar is optional) 
+<font color="blue"><a href="#figure5">(see Figure 5)</a></font>.
+
+<br /><br /><img src="plot_button.bmp" /><br /><br />
+<a name="figure5"><u>Figure 5: Plotting</u></a><br />
+
+</p>
+
+
+<h5><font color="blue"><a name="view"> View Column/Cell(s) </a></font></h5>
+<p>
+Select 1 or more cells from the same column, click the <b> 'View Fits' </b>
+button  to display available curves. <br />
+
+For example, select the cells of the <b> 'Chi2' </b> column, then click the <b> 'View Fits' </b> 
+button. The plots generates will represent the <b>residuals </b> plots. <br />
+ 
+
+If you select any cells of the <b> 'Data' </b> column and click the
+<b> 'View Fits' </b> button. It generates both
+<b> data and fits</b> in the graph <font color="blue"><a href="#figure6">(see Figure 6)</a></font>. <br />
+
+<b>Alternatively, just click the column letter (eg. B) 
+to choose all the available Data sets, then simply click the 'View Fits' button to plot the data and fits. 
+</b>
+<br />
+<br /><br /><img src="view_button.bmp" /><br /><br />
+<a name="figure6"><u>Figure 6: View Fits</u></a><br /><br />
+</p>
+
+
+</body>
+</html>
Index: src/sas/perspectives/fitting/media/category_manager_help.html
===================================================================
--- src/sas/perspectives/fitting/media/category_manager_help.html	(revision b9a5f0eb8e8cbff8f8d934bbfa4ea18168141e13)
+++ src/sas/perspectives/fitting/media/category_manager_help.html	(revision b9a5f0eb8e8cbff8f8d934bbfa4ea18168141e13)
@@ -0,0 +1,42 @@
+<html>
+<body>
+<h4>Model Category Manager</h4>
+<ul>
+<li><a href="#description">Description</a></li>
+
+</ul>
+<h5><a name="description">Description</a></h5>
+<p>
+
+Our SAS models are, by default, classified into 5 categories; shapes, shape-independent, 
+structure factor, and customized models, where these categories (except the customized models) can be reassigned, added, and removed using 'Category Manager'.
+Each models can also be enabled(shown)/disabled(hidden) from the category that they
+belong.
+The Category Manager panel is accessible from the model category 'Modify' button in the fitting panel or the 'View/Category Manager' menu in the menu bar (Fig. 1).
+<br>
+1) Enable/Disable models: Check/uncheck the check boxes to enable/disable the models (Fig. 2).
+<br>
+2) Change category: Highlight a model in the list by left-clicking and click the 'Modify' button. In the 'Change Category' panel, 
+one can create/use a category for the model, then click the 'Add' button. In order to delete a category, select a category name and click the 'Remove Selected' 
+button (Fig. 3). 
+<br>
+3) To apply the changes made, hit the OK button. Otherwise, click the 'Cancel' button (Fig. 2).
+</p>
+<br>
+<img src="cat_fig0.bmp"/>
+<br>
+Fig.1
+<br>
+<br>
+<img src="cat_fig1.bmp"/>
+<br>
+Fig.2
+<br>
+<br>
+<img src="cat_fig2.bmp"/>
+<br>
+Fig.3
+<br>
+</body>
+
+</html>
Index: c/sas/perspectives/fitting/media/fitting_help.html
===================================================================
--- src/sas/perspectives/fitting/media/fitting_help.html	(revision a235729ed2a479e35a34ad893c281ee31ba08990)
+++ 	(revision )
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-<body>
-<div class="document" id="fitting-perspective">
-<h1 class="title">Fitting Perspective</h1>
-
-<!-- fitting_help.rst -->
-<!-- This is a port of the original SasView html help file to ReSTructured text -->
-<!-- by S King, ISIS, during SasView CodeCamp-III in Feb 2015. -->
-<p><a class="reference internal" href="#load-a-file">Load_a_File</a></p>
-<p><a class="reference internal" href="#single-fit">Single_Fit</a></p>
-<p><a class="reference internal" href="#simultaneous-fitting">Simultaneous_Fitting</a></p>
-<p><a class="reference internal" href="#batch-fitting">Batch_Fitting</a></p>
-<p><a class="reference internal" href="#model-selection">Model_Selection</a></p>
-<p><a class="reference internal" href="#model-category-manager">Model_Category_Manager</a></p>
-<p><a class="reference internal" href="#model-functions">Model_Functions</a></p>
-<p><a class="reference internal" href="#custom-model-editor">Custom_Model_Editor</a></p>
-<p><a class="reference internal" href="#polydispersity-distributions">Polydispersity_Distributions</a></p>
-<p><a class="reference internal" href="#smearing-computation">Smearing_Computation</a></p>
-<p><a class="reference internal" href="#polarisation-magnetic-scattering">Polarisation_Magnetic_Scattering</a></p>
-<p><a class="reference internal" href="#key-combinations">Key_Combinations</a></p>
-<p><a class="reference internal" href="#status-bar-help">Status_Bar_Help</a></p>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-<div class="section" id="id1">
-<span id="load-a-file"></span><h1>Load a File</h1>
-<p>From Menu go to <em>Data</em> -&gt; <em>Load Data File(or Folder)</em> . Select a file/folder
-from the menu bar and click on Open button. Data contained in the file will be
-displayed. To cancel the loading click on <em>cancel</em> . In case a file can not be
-loaded, an error message will be displayed on the statusbar.</p>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-</div>
-<div class="section" id="id2">
-<span id="single-fit"></span><h1>Single Fit</h1>
-<p>One of two fit-engines can be chosen from the Fitting menu bar. The Simple Fit-
-engine uses Scipy's leasqr and the Complex Fit-Engine is a custom optimizer
-that provides a better chance to find the global minimum of the <a href="#id3"><span class="problematic" id="id4">|</span></a>chi|2 but that
-requires longer computation time. In order to set a data to a control panel
-(FitPage), see the &quot;DataLoader Help&quot;. Once a data set to the FiPage, select a
-model from the combo box. The default parameters of the model will be display.
-Set initial parameters if need. Check and uncheck parameters to fit/fix. Click
-the <em>'Fit'</em>  button. When the fitting is finished, the resultant parameter
-values will be displayed with the errors. If a error is missing, it generally
-means that the corresponding parameter is not very depending on the model. The
-chisq/Npt_fit and the plot associated with the fit operation will be also
-updated.</p>
-<div class="system-message" id="id3">
-<p class="system-message-title">System Message: WARNING/2 (<tt class="docutils">C:/Code/Eclipse_workspace/SasViewTrunk/src/sas/perspectives/fitting/media/fitting_help.rst</tt>, line 73); <em><a href="#id4">backlink</a></em></p>
-Inline substitution_reference start-string without end-string.</div>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-</div>
-<div class="section" id="id5">
-<span id="simultaneous-fitting"></span><h1>Simultaneous Fitting</h1>
-<p>This fitting option enables to set a number of the constraints between the
-parameters of fitting(s). It requires one or more FitPages with a data and a
-model set for the fitting, and performs multiple fittings given by the
-FitPage(s). The Complex (ParkMC) FitEngine will be used automatically.</p>
-<p>Simultaneous Fit without Constraint</p>
-<p>Assuming some FitPages are already set up, check the checkboxes of the
-model_data rows to fit. And click the 'Fit' button. The results will return to
-each FitPages.</p>
-<p>Note that the chi2/Npts returned is the sum of the chi2/Npts of each fits. If
-one needs the chi2 value only for a page, click the 'Compute' button in the
-FitPage to recalculate.</p>
-<p>Simultaneous Fit with Constraint</p>
-<p>Enter constraint in the text control next to <em>constraint fit</em>  button.
-Constraint should be of type model1 parameter name = f(model2 parameter name)
-for example, M0.radius=2*M1.radius. Many constraints can be entered for a
-single fit. Each of them should be separated by a newline charater or &quot;;&quot;
-The easy setup can generate many constraint inputs easily when the selected
-two models are the same type.</p>
-<p>Note that the chi2/Npts returned is the sum of the chi2/Npts of each fits.
-If one needs the chi2 value only for one fit, click the 'Compute' button in
-the FitPage to recalculate.</p>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-</div>
-<div class="section" id="id6">
-<span id="batch-fitting"></span><h1>Batch Fitting</h1>
-<p><a class="reference internal" href="#batch-fit">Batch_Fit</a></p>
-<p><a class="reference internal" href="#batch-window">Batch_Window</a></p>
-<p><a class="reference internal" href="#edit-grid">Edit_Grid</a></p>
-<p><a class="reference internal" href="#save-grid">Save_Grid</a></p>
-<p><a class="reference internal" href="#open-batch-results">Open_Batch_Results</a></p>
-<p><a class="reference internal" href="#plot">Plot</a></p>
-<p><a class="reference internal" href="#view-column-cell">View_Column_Cell</a></p>
-</div>
-<div class="section" id="id7">
-<span id="batch-fit"></span><h1>Batch Fit</h1>
-<p>Create a <em>Batch Page</em> by selecting the <em>Batch</em> radio button on the DataExplorer
-(see figure below) and for a new control page select 'New FitPage' in the
-Fitting menubar.</p>
-<img alt="batch_button_area.bmp" src="batch_button_area.bmp" />
-<p>Figure 1: MenuBar:</p>
-<p>Load Data to the DataExplorer if not already loaded.</p>
-<p>Select one or more data sets by checking the check boxes, and then make sure
-that &quot;Fitting&quot; is selected in the dropdown menu next to the &quot;Send To&quot; button.
-Once ready, click the 'Send To' button to set data to a BatchPage. If already
-an empty batch page exists, it will be set there. Otherwise it will create a
-new Batch Page. Set up the model and the parameter values as same as a single
-fitting (see Single Fit help) &lt;<a class="reference internal" href="#single-fit">Single_Fit</a>&gt;. Then use 'Fit' button to
-perform the fitting.</p>
-<p>Unlike a single fit, the results of the fittings will not return to the
-BatchPage'. Instead, a Grid window will be provided once the fitting is
-completed. The Grid window is also accessible from the 'View' menu
-(see Figure 2).</p>
-<p>Note that only one model is used for all the data. The initial parameter
-values given in the control page will be used all the data fittings. If one
-wants the FitEngine to use the initial values from the results of the
-previous data fitting (if any), choose the 'Chain Fitting' option in the
-Fitting menubar, which will speed up the fitting especially when you have
-lots of, and similar, data sets.</p>
-</div>
-<div class="section" id="id8">
-<span id="batch-window"></span><h1>Batch Window</h1>
-<p>Batch Window provides an easy way to view the fit results, i.e., plot data,
-fits, and residuals. Batch window will be automatically shown after a batch
-fit is finished.</p>
-<p>Once closed, it can be opened anytime from the &quot;View&quot; menubar item (see
-Figure 2).</p>
-<img alt="restore_batch_window.bmp" src="restore_batch_window.bmp" />
-<p>Figure 2: Edit Menu:</p>
-</div>
-<div class="section" id="id9">
-<span id="edit-grid"></span><h1>Edit Grid</h1>
-<p>Once a batch fit is completed, all fitted and fixed model parameters are
-displayed to the current sheet of the batch window except the errors of the
-parameters. To view the errors, click on a given column then under <em>Edit</em>
-menubar item, and insert the desired parameter by selecting a menu item with
-the appropriated label. Empty column can be inserted in the same way. A
-column value can be customized by editing an existing empty column.</p>
-<p>To Remove column from the grid, select it, choose edit menu, and click the
-<em>'remove'</em>  menu item. Any removed column should reinserted whenever needed.</p>
-<p>All above options are also available when right clicking on a given column
-label(see Figure 3).</p>
-<p><em>Note:</em>  A column always needs to be selected in order to remove or insert a
-column in the grid.</p>
-<img alt="edit_menu.bmp" src="edit_menu.bmp" />
-<p>Figure 3: Edit Menu:</p>
-</div>
-<div class="section" id="id10">
-<span id="save-grid"></span><h1>Save Grid</h1>
-<p>To save the current page on the batch window, select the <em>'File'</em>  menubar
-item(see Figure 4), then choose the <em>'Save as'</em>  menu item to save it as a
-.csv file.</p>
-<p><em>Note:</em> The grid doesn't save the data array, fits, and the array residuals.
-As a result, the 'View (fit) Results' functionality will be lost when
-reloading the saved file.</p>
-<p>Warning! To ensure accuracy of saved fit results, it is recommended to save
-the current grid before modifying it .</p>
-</div>
-<div class="section" id="id11">
-<span id="open-batch-results"></span><h1>Open Batch Results</h1>
-<p>Any <em>csv</em>  file can be opened in the grid by selecting the <em>'Open'</em>  under
-the <em>'File'</em>  menu in the Grid Window(see Figure 4). All columns in the file
-will be displayed but insertion will not available. Insertion will be
-available only when at least one column will be removed from the grid.</p>
-<img alt="file_menu.bmp" src="file_menu.bmp" />
-<p>Figure 4: MenuBar:</p>
-</div>
-<div class="section" id="id12">
-<span id="plot"></span><h1>Plot</h1>
-<p>To <em>plot</em>  a column versus another, select one column at the time, click the
-<em>'Add'</em>  button next to the text control of X/Y -axis <em>Selection Range</em>  to
-plot the value of this column on the X/Y axis. Alternatively, all available
-range can be selected by clicking the column letter (eg. B). Repeat the same
-procedure the next axis. Finally, click the <em>'Plot'</em>  button. When clicking
-on <em>Add</em>  button, the grid will automatically fill the axis label, but
-different labels and units can be entered in the correct controls before
-clicking on the plot button.</p>
-<p><em>X/Y -Axis Selection Range</em> can be edited manually. These text controls
-allow the following types of expression (operation can be + - * /, or pow)</p>
-<p>1) if the current axis label range is a function of 1 or more columns, write
-this type of expression</p>
-<p>constant1  * column_name1 [minimum row index :  maximum  row index] operator
-constant2 * column_name2 [minimum row index :  maximum  row index]</p>
-<p>Example: radius [2 : 5] -3 * scale [2 : 5]</p>
-<p>2) if only some values of a given column are need but the range between the
-first row and the last row used is not continuous, write the following
-expression in the text control</p>
-<p>column_name1 [minimum row index1 :  maximum  row index1] , column_name1
-[minimum row index2 :  maximum  row index2]</p>
-<p>Example : radius [2 : 5] , radius [10 : 25]</p>
-<p>Note: Both text controls ( X and Y-axis Selection Ranges) need to be filled
-with valid entries for plotting to work. The dY-bar is optional (see Figure 5).</p>
-<img alt="plot_button.bmp" src="plot_button.bmp" />
-<p>Figure 5: Plotting</p>
-</div>
-<div class="section" id="view-column-cell-s">
-<span id="view-column-cell"></span><h1>View Column/Cell(s)</h1>
-<p>Select 1 or more cells from the same column, click the 'View Fits' button to
-display available curves.</p>
-<p>For example, select the cells of the  'Chi2'  column, then click the  'View Fits'
-button. The plots generates will represent the residuals  plots.</p>
-<p>If you select any cells of the 'Data' column and click the 'View Fits' button.
-It generates both  data and fits in the graph (see Figure 6).</p>
-<p>Alternatively, just click the column letter (eg. B) to choose all the
-available data sets, then simply click the 'View Fits' button to plot the
-data and fits.</p>
-<img alt="view_button.bmp" src="view_button.bmp" />
-<p>Figure 6: View Fits</p>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-<p id="model-selection"><a class="reference internal" href="#model-type">Model_Type</a></p>
-<p><a class="reference internal" href="#change-model-parameters">Change_Model_Parameters</a></p>
-<p><a class="reference internal" href="#write-your-own-model">Write_your_Own_Model</a></p>
-</div>
-<div class="section" id="id13">
-<span id="model-type"></span><h1>Model Type</h1>
-<p>Models are grouped into three classes</p>
-<ul class="simple">
-<li><em>Shapes</em></li>
-<li><em>Shape-Independent</em></li>
-<li><em>Uncategorised</em></li>
-<li><em>Customized Models</em></li>
-<li><em>Structure Factor</em></li>
-</ul>
-</div>
-<div class="section" id="id14">
-<span id="change-model-parameters"></span><h1>Change Model Parameters</h1>
-<p>To visualize model in a different window, from menu click on <em>Model</em>. Select
-a type of model and then the name of your model.A new window will appear with
-the plot of your model with default values. Change model's parameters on
-<em>model view</em>  tab and view the plotted model with its new parameters.</p>
-</div>
-<div class="section" id="id15">
-<span id="write-your-own-model"></span><h1>Write your Own Model</h1>
-<p>The custom model editors are provided from 'Fitting' menu in the menu bar.
-See 'Custom model editor' in the side menu on left. Advanced users can write
-your own model and save it (in .py format) into <em>plugin_models</em>  directory in
-.sasview of your home directory (eg., username.sasview&gt;plugin_models). Your
-plugin model will be added into &quot;&lt;&gt;Customized Models&quot; on the next model
-selection.</p>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-</div>
-<div class="section" id="id16">
-<span id="model-category-manager"></span><h1>Model Category Manager</h1>
-<p>Our SAS models are, by default, classified into 5 categories; shapes,
-shape-independent, structure factor, and customized models, where these
-categories (except the customized models) can be reassigned, added, and
-removed using 'Category Manager'. Each models can also be enabled(shown)/
-disabled(hidden) from the category that they belong. The Category Manager
-panel is accessible from the model category 'Modify' button in the fitting
-panel or the 'View/Category Manager' menu in the menu bar (Fig. 1).</p>
-<p>1) Enable/Disable models: Check/uncheck the check boxes to enable/disable the
-models (Fig. 2).</p>
-<p>2) Change category: Highlight a model in the list by left-clicking and click
-the 'Modify' button. In the 'Change Category' panel, one can create/use a
-category for the model, then click the 'Add' button. In order to delete a
-category, select a category name and click the 'Remove Selected' button
-(Fig. 3).</p>
-<p>3) To apply the changes made, hit the OK button. Otherwise, click the 'Cancel'
-button (Fig. 2).</p>
-<img alt="cat_fig0.bmp" src="cat_fig0.bmp" />
-<p>Fig.1</p>
-<img alt="cat_fig1.bmp" src="cat_fig1.bmp" />
-<p>Fig.2</p>
-<img alt="cat_fig2.bmp" src="cat_fig2.bmp" />
-<p>Fig.3</p>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-</div>
-<div class="section" id="id17">
-<span id="model-functions"></span><h1>Model Functions</h1>
-<p>Model Documentation &lt;models/model_functions&gt;</p>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-</div>
-<div class="section" id="id18">
-<span id="custom-model-editor"></span><h1>Custom Model Editor</h1>
-<p><a class="reference internal" href="#description">Description</a></p>
-<p><a class="reference internal" href="#new">New</a></p>
-<p><a class="reference internal" href="#sum-multi-p1-p2">Sum_Multi_p1_p2</a></p>
-<p><a class="reference internal" href="#advanced">Advanced</a></p>
-<p><a class="reference internal" href="#delete">Delete</a></p>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-</div>
-<div class="section" id="id19">
-<span id="description"></span><h1>Description</h1>
-<p>This menu (Fitting/Edit Custom Model in the menu bar) interface is to provide
-you an easy way to write your own custom models. The changes in a model
-function are effective after it is re-selected from the combo-box menu.</p>
-<img alt="edit_model_menu.bmp" src="edit_model_menu.bmp" />
-</div>
-<div class="section" id="id20">
-<span id="new"></span><h1>New</h1>
-<p>This option is used to make a new model. A model code generated by this option
-can be viewed and further modified by the 'Advanced' option below.</p>
-<img alt="new_model.bmp" src="new_model.bmp" />
-</div>
-<div class="section" id="id21">
-<span id="sum-multi-p1-p2"></span><h1>Sum|Multi(p1,p2)</h1>
-<p>This option create a new sum (or multiplication) model. Fill up the (sum
-model function) name and the description. The description will show up on
-details button in the application. Then select the p1 or p2 model for the
-sum/multi model, select an operator as necessary and click the Apply button
-for activation. Hit the 'Close' button when it's done.</p>
-<img alt="sum_model.bmp" src="sum_model.bmp" />
-</div>
-<div class="section" id="id22">
-<span id="advanced"></span><h1>Advanced</h1>
-<p>The menu option shows all the files in the plugin_models folder. You can edit,
-modify, and save it. It is recommended to modify only the lines with arrow
-(-------). In the end of edit, 'Compile' and 'Run' from the menu bar to
-activate or to see the model working properly.</p>
-</div>
-<div class="section" id="id23">
-<span id="delete"></span><h1>Delete</h1>
-<p>The menu option is to delete the custom models. Just select the file name to
-delete.</p>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-</div>
-<div class="section" id="id24">
-<span id="polydispersity-distributions"></span><h1>Polydispersity Distributions</h1>
-<p>Calculates the form factor for a polydisperse and/or angular population of
-particles with uniform scattering length density. The resultant form factor
-is normalized by the average particle volume such that</p>
-<p>P(q) = scale*&lt;F*F&gt;/Vol + bkg</p>
-<p>where F is the scattering amplitude and the&lt;&gt;denote an average over the size
-distribution.  Users should use PD (polydispersity: this definition is
-different from the typical definition in polymer science) for a size
-distribution and Sigma for an angular distribution (see below).</p>
-<p>Note that this computation is very time intensive thus applying polydispersion/
-angular distrubtion for more than one paramters or increasing Npts values
-might need extensive patience to complete the computation. Also note that
-even though it is time consuming, it is safer to have larger values of Npts
-and Nsigmas.</p>
-<p>The following five distribution functions are provided</p>
-<ul class="simple">
-<li><em>Rectangular_Distribution_</em></li>
-<li><em>Array_Distribution_</em></li>
-<li><em>Gaussian_Distribution_</em></li>
-<li><em>Lognormal_Distribution_</em></li>
-<li><em>Schulz_Distribution_</em></li>
-</ul>
-</div>
-<div class="section" id="id25">
-<span id="rectangular-distribution"></span><h1>Rectangular Distribution</h1>
-<img alt="pd_image001.png" src="pd_image001.png" />
-<p>The xmean is the mean of the distribution, w is the half-width, and Norm is a
-normalization factor which is determined during the numerical calculation.
-Note that the Sigma and the half width <em>w</em>  are different.</p>
-<p>The standard deviation is</p>
-<img alt="pd_image002.png" src="pd_image002.png" />
-<p>The PD (polydispersity) is</p>
-<img alt="pd_image003.png" src="pd_image003.png" />
-<img alt="pd_image004.jpg" src="pd_image004.jpg" />
-</div>
-<div class="section" id="id26">
-<span id="array-distribution"></span><h1>Array Distribution</h1>
-<p>This distribution is to be given by users as a txt file where the array
-should be defined by two columns in the order of x and f(x) values. The f(x)
-will be normalized by SasView during the computation.</p>
-<p>Example of an array in the file</p>
-<p>30        0.1
-32        0.3
-35        0.4
-36        0.5
-37        0.6
-39        0.7
-41        0.9</p>
-<p>We use only these array values in the computation, therefore the mean value
-given in the control panel, for example Ã¢â¬Ëradius = 60Ã¢â¬â¢, will be ignored.</p>
-</div>
-<div class="section" id="id27">
-<span id="gaussian-distribution"></span><h1>Gaussian Distribution</h1>
-<img alt="pd_image005.png" src="pd_image005.png" />
-<p>The xmean is the mean of the distribution and Norm is a normalization factor
-which is determined during the numerical calculation.</p>
-<p>The PD (polydispersity) is</p>
-<img alt="pd_image003.png" src="pd_image003.png" />
-<img alt="pd_image006.jpg" src="pd_image006.jpg" />
-</div>
-<div class="section" id="id28">
-<span id="lognormal-distribution"></span><h1>Lognormal Distribution</h1>
-<img alt="pd_image007.png" src="pd_image007.png" />
-<p>The /mu/=ln(xmed), xmed is the median value of the distribution, and Norm is a
-normalization factor which will be determined during the numerical calculation.
-The median value is the value given in the size parameter in the control panel,
-for example, Ã¢â¬Åradius = 60Ã¢â¬ï¿œ.</p>
-<p>The PD (polydispersity) is given by /sigma/</p>
-<img alt="pd_image008.png" src="pd_image008.png" />
-<p>For the angular distribution</p>
-<img alt="pd_image009.png" src="pd_image009.png" />
-<p>The mean value is given by xmean=exp(/mu/+p2/2). The peak value is given by
-xpeak=exp(/mu/-p2).</p>
-<img alt="pd_image010.jpg" src="pd_image010.jpg" />
-<p>This distribution function spreads more and the peak shifts to the left as the
-p increases, requiring higher values of Nsigmas and Npts.</p>
-</div>
-<div class="section" id="id29">
-<span id="schulz-distribution"></span><h1>Schulz Distribution</h1>
-<img alt="pd_image011.png" src="pd_image011.png" />
-<p>The xmean is the mean of the distribution and Norm is a normalization factor
-which is determined during the numerical calculation.</p>
-<p>The z = 1/p2Ã¢â¬â 1.</p>
-<p>The PD (polydispersity) is</p>
-<img alt="pd_image012.png" src="pd_image012.png" />
-<p>Note that the higher PD (polydispersity) might need higher values of Npts and
-Nsigmas. For example, at PD = 0.7 and radisus = 60 A, Npts &gt;= 160, and
-Nsigmas &gt;= 15 at least.</p>
-<img alt="pd_image013.jpg" src="pd_image013.jpg" />
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-</div>
-<div class="section" id="id30">
-<span id="smearing-computation"></span><h1>Smearing Computation</h1>
-<p><a class="reference internal" href="#slit-smearing">Slit_Smearing</a></p>
-<p><a class="reference internal" href="#pinhole-smearing">Pinhole_Smearing</a></p>
-<p><a class="reference internal" href="#d-smearing">2D_Smearing</a></p>
-</div>
-<div class="section" id="id31">
-<span id="slit-smearing"></span><h1>Slit Smearing</h1>
-<p>The sit smeared scattering intensity for SAS is defined by</p>
-<img alt="sm_image002.gif" src="sm_image002.gif" />
-<p>where Norm =</p>
-<img alt="sm_image003.gif" src="sm_image003.gif" />
-<p>Equation 1</p>
-<p>The functions <img alt="inlineimage004" src="sm_image004.gif" /> and <img alt="inlineimage005" src="sm_image005.gif" />
-refer to the slit width weighting function and the slit height weighting
-determined at the q point, respectively. Here, we assumes that the weighting
-function is described by a rectangular function, i.e.,</p>
-<img alt="sm_image006.gif" src="sm_image006.gif" />
-<p>Equation 2</p>
-<p>and</p>
-<img alt="sm_image007.gif" src="sm_image007.gif" />
-<p>Equation 3</p>
-<p>so that <img alt="inlineimage008" src="sm_image008.gif" /> <img alt="inlineimage009" src="sm_image009.gif" /> for <img alt="inlineimage010" src="sm_image010.gif" /> and u.</p>
-<p>The <img alt="inlineimage011" src="sm_image011.gif" /> and <img alt="inlineimage012" src="sm_image012.gif" /> stand for
-the slit height (FWHM/2) and the slit width (FWHM/2) in the q space. Now the
-integral of Equation 1 is simplified to</p>
-<img alt="sm_image013.gif" src="sm_image013.gif" />
-<p>Equation 4</p>
-</div>
-<div class="section" id="numerical-implementation-of-equation-4">
-<h1>Numerical Implementation of Equation 4</h1>
-</div>
-<div class="section" id="case-1">
-<h1>Case 1</h1>
-<p>For <img alt="inlineimage012" src="sm_image012.gif" /> = 0 and <img alt="inlineimage011" src="sm_image011.gif" /> = constant.</p>
-<img alt="sm_image016.gif" src="sm_image016.gif" />
-<p>For discrete q values, at the q values from the data points and at the q
-values extended up to qN= qi + <img alt="inlineimage011" src="sm_image011.gif" /> the smeared
-intensity can be calculated approximately</p>
-<img alt="sm_image017.gif" src="sm_image017.gif" />
-<p>Equation 5</p>
-<p><img alt="inlineimage018" src="sm_image018.gif" /> = 0 for <em>Is</em> in <em>j</em> &lt; <em>i</em> or <em>j</em> &gt; N-1*.</p>
-</div>
-<div class="section" id="case-2">
-<h1>Case 2</h1>
-<p>For <img alt="inlineimage012" src="sm_image012.gif" /> = constant and <img alt="inlineimage011" src="sm_image011.gif" /> = 0.</p>
-<p>Similarly to Case 1, we get</p>
-<p><img alt="inlineimage019" src="sm_image019.gif" /> for qp= qi- <img alt="inlineimage012" src="sm_image012.gif" /> and qN= qi+ <img alt="inlineimage012" src="sm_image012.gif" />. <img alt="inlineimage018" src="sm_image018.gif" /> = 0
-for <em>Is</em> in <em>j</em> &lt; <em>p</em> or <em>j</em> &gt; <em>N-1</em>.</p>
-</div>
-<div class="section" id="case-3">
-<h1>Case 3</h1>
-<p>For <img alt="inlineimage011" src="sm_image011.gif" /> = constant and
-<img alt="inlineimage011" src="sm_image011.gif" /> = constant.</p>
-<p>In this case, the best way is to perform the integration, Equation 1,
-numerically for both slit height and width. However, the numerical integration
-is not correct enough unless given a large number of iteration, say at least
-10000 by 10000 for each element of the matrix, W, which will take minutes and
-minutes to finish the calculation for a set of typical SAS data. An
-alternative way which is correct for slit width &lt;&lt; slit hight, is used in
-SasView. This method is a mixed method that combines method 1 with the
-numerical integration for the slit width.</p>
-<img alt="sm_image020.gif" src="sm_image020.gif" />
-<p>Equation 7</p>
-<p>for qp= qi- <img alt="inlineimage012" src="sm_image012.gif" /> and
-qN= qi+ <img alt="inlineimage012" src="sm_image012.gif" />. <img alt="inlineimage018" src="sm_image018.gif" /> = 0 for
-<em>Is</em> in <em>j</em> &lt; <em>p</em> or <em>j</em> &gt; <em>N-1</em>.</p>
-</div>
-<div class="section" id="id32">
-<span id="pinhole-smearing"></span><h1>Pinhole Smearing</h1>
-<p>The pinhole smearing computation is done similar to the case above except
-that the weight function used is the Gaussian function, so that the Equation 6
-for this case becomes</p>
-<img alt="sm_image021.gif" src="sm_image021.gif" />
-<p>Equation 8</p>
-<p>For all the cases above, the weighting matrix <em>W</em> is calculated when the
-smearing is called at the first time, and it includes the ~ 60 q values
-(finely binned evenly) below (&gt;0) and above the q range of data in order
-to cover all data points of the smearing computation for a given model and
-for a given slit size. The <em>Norm</em>  factor is found numerically with the
-weighting matrix, and considered on <em>Is</em> computation.</p>
-</div>
-<div class="section" id="id33">
-<span id="d-smearing"></span><h1>2D Smearing</h1>
-<p>The 2D smearing computation is done similar to the 1D pinhole smearing above
-except that the weight function used was the 2D elliptical Gaussian function</p>
-<img alt="sm_image022.gif" src="sm_image022.gif" />
-<p>Equation 9</p>
-<p>In Equation 9, x0 = qcos/theta/ and y0 = qsin/theta/, and the primed axes
-are in the coordinate rotated by an angle /theta/ around the z-axis (below)
-so that xÃ¢â¬â¢0= x0cos/theta/+y0sin/theta/ and yÃ¢â¬â¢0= -x0sin/theta/+y0cos/theta/.</p>
-<p>Note that the rotation angle is zero for x-y symmetric elliptical Gaussian
-distribution. The A is a normalization factor.</p>
-<img alt="sm_image023.gif" src="sm_image023.gif" />
-<p>Now we consider a numerical integration where each bins in /theta/ and R are
-<em>evenly</em> (this is to simplify the equation below) distributed by /delta//theta/
-and /delta/R, respectively, and it is assumed that I(xÃ¢â¬â¢, yÃ¢â¬â¢) is constant
-within the bins which in turn becomes</p>
-<img alt="sm_image024.gif" src="sm_image024.gif" />
-<p>Equation 10</p>
-<p>Since we have found the weighting factor on each bin points, it is convenient
-to transform xÃ¢â¬â¢-yÃ¢â¬â¢ back to x-y coordinate (rotating it by -/theta/ around z
-axis). Then, for the polar symmetric smear</p>
-<img alt="sm_image025.gif" src="sm_image025.gif" />
-<p>Equation 11</p>
-<p>where</p>
-<img alt="sm_image026.gif" src="sm_image026.gif" />
-<p>while for the x-y symmetric smear</p>
-<img alt="sm_image027.gif" src="sm_image027.gif" />
-<p>Equation 12</p>
-<p>where</p>
-<img alt="sm_image028.gif" src="sm_image028.gif" />
-<p>Here, the current version of the SasView uses Equation 11 for 2D smearing
-assuming that all the Gaussian weighting functions are aligned in the polar
-coordinate.</p>
-<p>In the control panel, the higher accuracy indicates more and finer binnng
-points so that it costs more in time.</p>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-</div>
-<div class="section" id="id34">
-<span id="polarisation-magnetic-scattering"></span><h1>Polarisation/Magnetic Scattering</h1>
-<p>Magnetic scattering is implemented in five (2D) models</p>
-<ul class="simple">
-<li><em>SphereModel</em></li>
-<li><em>CoreShellModel</em></li>
-<li><em>CoreMultiShellModel</em></li>
-<li><em>CylinderModel</em></li>
-<li><em>ParallelepipedModel</em></li>
-</ul>
-<p>In general, the scattering length density (SLD) in each regions where the
-SLD (=/beta/) is uniform, is a combination of the nuclear and magnetic SLDs and
-depends on the spin states of the neutrons as follows. For magnetic scattering,
-only the magnetization component, <em>M*perp, perpendicular to the scattering
-vector *Q</em> contributes to the the magnetic scattering length.</p>
-<img alt="mag_vector.bmp" src="mag_vector.bmp" />
-<p>The magnetic scattering length density is then</p>
-<img alt="dm_eq.gif" src="dm_eq.gif" />
-<p>where /gamma/ = -1.913 the gyromagnetic ratio, /mu/B is the Bohr magneton, r0
-is the classical radius of electron, and <em>/sigma/</em> is the Pauli spin. For
-polarised neutron, the magnetic scattering is depending on the spin states.</p>
-<p>Let's consider that the incident neutrons are polarized parallel (+)/
-anti-parallel (-) to the x' axis (See both Figures above). The possible
-out-coming states then are + and - states for both incident states</p>
-<p>Non-spin flips: (+ +) and (- -)
-Spin flips:     (+ -) and (- +)</p>
-<img alt="M_angles_pic.bmp" src="M_angles_pic.bmp" />
-<p>Now, let's assume that the angles of the <em>Q</em>  vector and the spin-axis (x')
-against x-axis are /phi/ and /theta/up, respectively (See Figure above). Then,
-depending upon the polarisation (spin) state of neutrons, the scattering length
-densities, including the nuclear scattering length density (/beta/N) are given
-as, for non-spin-flips</p>
-<img alt="sld1.gif" src="sld1.gif" />
-<p>for spin-flips</p>
-<img alt="sld2.gif" src="sld2.gif" />
-<p>where</p>
-<img alt="mxp.gif" src="mxp.gif" />
-<img alt="myp.gif" src="myp.gif" />
-<img alt="mzp.gif" src="mzp.gif" />
-<img alt="mqx.gif" src="mqx.gif" />
-<img alt="mqy.gif" src="mqy.gif" />
-<p>Here, the M0x, M0y and M0z are the x, y and z components of the magnetization
-vector given in the xyz lab frame. The angles of the magnetization, /theta/M
-and /phi/M as defined in the Figure (above)</p>
-<img alt="m0x_eq.gif" src="m0x_eq.gif" />
-<img alt="m0y_eq.gif" src="m0y_eq.gif" />
-<img alt="m0z_eq.gif" src="m0z_eq.gif" />
-<p>The user input parameters are M0_sld = DMM0, Up_theta = /theta/up,
-M_theta = /theta/M, and M_phi = /phi/M. The 'Up_frac_i' and 'Up_frac_f' are
-the ratio</p>
-<p>(spin up)/(spin up + spin down)</p>
-<p>neutrons before the sample and at the analyzer, respectively.</p>
-<p><em>Note:</em> The values of the 'Up_frac_i' and 'Up_frac_f' must be in the range
-between 0 and 1.</p>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-</div>
-<div class="section" id="id35">
-<span id="key-combinations"></span><h1>Key Combinations</h1>
-<p><a class="reference internal" href="#copy-paste">Copy_Paste</a></p>
-<p><a class="reference internal" href="#bookmark">Bookmark</a></p>
-<p><a class="reference internal" href="#graph-context-menu">Graph_Context_Menu</a></p>
-<p><a class="reference internal" href="#ftolerance">FTolerance</a></p>
-</div>
-<div class="section" id="id36">
-<span id="copy-paste"></span><h1>Copy &amp; Paste</h1>
-<p>To copy the parameter values in a Fit(Model) panel to the clipboard:</p>
-<p><em>Ctrl(Cmd on MAC) + Left(Mouse)Click</em>  on the panel.</p>
-<p>To paste the parameter values to a Fit(Model)panel from the clipboard:</p>
-<p><em>Ctrl(Cmd on MAC) + Shift + Left(Mouse)Click</em>  on the panel.</p>
-<p>If this operation is successful, it will say so in the info line at the
-bottom of the SasView window.</p>
-</div>
-<div class="section" id="id37">
-<span id="bookmark"></span><h1>Bookmark</h1>
-<p>Bookmark of a fit-panel or model-panel status:</p>
-<p><em>(Mouse)Right-Click</em>  and select the bookmark in the popup list.</p>
-</div>
-<div class="section" id="id38">
-<span id="graph-context-menu"></span><h1>Graph Context Menu</h1>
-<p>To get the graph context menu to print, copy, save data, (2D)average, etc.:</p>
-<p><em>Locate the mouse point on the plot to highlight and *(Mouse) Right Click</em>
-to bring up the full menu.</p>
-</div>
-<div class="section" id="ftolerance-scipy">
-<span id="ftolerance"></span><h1>FTolerance (SciPy)</h1>
-<p>To change the ftol value of the Scipy FitEngine (leastsq):</p>
-<p>First, make sure that the Fit panel has data and a model selected.</p>
-<p><em>Ctrl(Cmd on MAC) + Shift + Alt + Right(Mouse)Click</em>  on the panel.</p>
-<p>Then, set up the value in the dialog panel.</p>
-<p>If this operation is successful, the new ftol value will be displayed in the
-info line at the bottom of the SV window.Note that increasing the ftol value
-may cause for the fitting to terminate with higher <a href="#id39"><span class="problematic" id="id40">|</span></a>chi|sq.</p>
-<div class="system-message" id="id39">
-<p class="system-message-title">System Message: WARNING/2 (<tt class="docutils">C:/Code/Eclipse_workspace/SasViewTrunk/src/sas/perspectives/fitting/media/fitting_help.rst</tt>, line 947); <em><a href="#id40">backlink</a></em></p>
-Inline substitution_reference start-string without end-string.</div>
-<!-- ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ -->
-</div>
-<div class="section" id="id41">
-<span id="status-bar-help"></span><h1>Status Bar Help</h1>
-<p><a class="reference internal" href="#message-warning-hint">Message_Warning_Hint</a></p>
-<p><a class="reference internal" href="#console">Console</a></p>
-</div>
-<div class="section" id="id42">
-<span id="message-warning-hint"></span><h1>Message/Warning/Hint</h1>
-<p>The status bar located at the bottom of the application frame, displays
-messages, hints, warnings and errors.</p>
-</div>
-<div class="section" id="id43">
-<span id="console"></span><h1>Console</h1>
-<p>Select <em>light bulb/info icon</em>  button in the status bar at the bottom of the
-application window to display available history. During a long task, the
-console can also help users to understand the status in progressing.</p>
-</div>
-</div>
-</body>
-</html>
Index: c/sas/perspectives/fitting/media/fitting_help.rst
===================================================================
--- src/sas/perspectives/fitting/media/fitting_help.rst	(revision 98b30b46ac241d857a5698740991daae2c25c3c2)
+++ 	(revision )
@@ -1,977 +1,0 @@
-.. fitting_help.rst
-
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-.. |beta| unicode:: U+03B2
-.. |gamma| unicode:: U+03B3
-.. |mu| unicode:: U+03BC
-.. |sigma| unicode:: U+03C3
-.. |phi| unicode:: U+03C6
-.. |theta| unicode:: U+03B8
-.. |chi| unicode:: U+03C7
-
-.. |inlineimage004| image:: sm_image004.gif
-.. |inlineimage005| image:: sm_image005.gif
-.. |inlineimage008| image:: sm_image008.gif
-.. |inlineimage009| image:: sm_image009.gif
-.. |inlineimage010| image:: sm_image010.gif
-.. |inlineimage011| image:: sm_image011.gif
-.. |inlineimage012| image:: sm_image012.gif
-.. |inlineimage018| image:: sm_image018.gif
-.. |inlineimage019| image:: sm_image019.gif
-
-
-Fitting Perspective
-===================
-
-Load_a_File_
-
-Single_Fit_
-
-Simultaneous_Fitting_
-
-Batch_Fitting_
-
-Model_Selection_
-
-Model_Category_Manager_
-
-Model_Functions_
-
-Custom_Model_Editor_
-
-Polydispersity_Distributions_
-
-Smearing_Computation_
-
-Polarisation_Magnetic_Scattering_
-
-Key_Combinations_
-
-Status_Bar_Help_
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-..  _Load_a_File:
-
-Load a File
------------
-
-From Menu go to *Data* -> *Load Data File(or Folder)* . Select a file/folder 
-from the menu bar and click on Open button. Data contained in the file will be 
-displayed. To cancel the loading click on *cancel* . In case a file can not be 
-loaded, an error message will be displayed on the statusbar.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Single_Fit:
-
-Single Fit
-----------
-
-One of two fit-engines can be chosen from the Fitting menu bar. The Simple Fit-
-engine uses Scipy's leasqr and the Complex Fit-Engine is a custom optimizer 
-that provides a better chance to find the global minimum of the |chi| 2 but that
-requires longer computation time. In order to set a data to a control panel 
-(FitPage), see the "DataLoader Help". Once a data set to the FiPage, select a 
-model from the combo box. The default parameters of the model will be display. 
-Set initial parameters if need. Check and uncheck parameters to fit/fix. Click 
-the *'Fit'*  button. When the fitting is finished, the resultant parameter 
-values will be displayed with the errors. If a error is missing, it generally 
-means that the corresponding parameter is not very depending on the model. The 
-chisq/Npt_fit and the plot associated with the fit operation will be also 
-updated.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-..  _Simultaneous_Fitting:
-
-Simultaneous Fitting
---------------------
-
-This fitting option enables to set a number of the constraints between the 
-parameters of fitting(s). It requires one or more FitPages with a data and a 
-model set for the fitting, and performs multiple fittings given by the 
-FitPage(s). The Complex (ParkMC) FitEngine will be used automatically.
-
-Simultaneous Fit without Constraint
-
-Assuming some FitPages are already set up, check the checkboxes of the 
-model_data rows to fit. And click the 'Fit' button. The results will return to 
-each FitPages.
-
-Note that the chi2/Npts returned is the sum of the chi2/Npts of each fits. If 
-one needs the chi2 value only for a page, click the 'Compute' button in the 
-FitPage to recalculate.
-
-Simultaneous Fit with Constraint
-
-Enter constraint in the text control next to *constraint fit*  button. 
-Constraint should be of type model1 parameter name = f(model2 parameter name) 
-for example, M0.radius=2*M1.radius. Many constraints can be entered for a 
-single fit. Each of them should be separated by a newline charater or ";" 
-The easy setup can generate many constraint inputs easily when the selected 
-two models are the same type.
-
-Note that the chi2/Npts returned is the sum of the chi2/Npts of each fits. 
-If one needs the chi2 value only for one fit, click the 'Compute' button in 
-the FitPage to recalculate.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-..  _Batch_Fitting:
-
-Batch Fitting
--------------
-
-Batch_Fit_
-
-Batch_Window_
-
-Edit_Grid_
-
-Save_Grid_
-
-Open_Batch_Results_
-
-Plot_
-
-View_Column_Cell_
-
-.. _Batch_Fit:
-
-Batch Fit
----------
-
-Create a *Batch Page* by selecting the *Batch* radio button on the DataExplorer
-(see figure below) and for a new control page select 'New FitPage' in the 
-Fitting menubar.
-
-.. image:: batch_button_area.bmp
-
-Figure 1: MenuBar: 
-
-Load Data to the DataExplorer if not already loaded.
-
-Select one or more data sets by checking the check boxes, and then make sure 
-that "Fitting" is selected in the dropdown menu next to the "Send To" button. 
-Once ready, click the 'Send To' button to set data to a BatchPage. If already 
-an empty batch page exists, it will be set there. Otherwise it will create a 
-new Batch Page. Set up the model and the parameter values as same as a single 
-fitting (see Single Fit help) <Single_Fit_>. Then use 'Fit' button to 
-perform the fitting.
-
-Unlike a single fit, the results of the fittings will not return to the 
-BatchPage'. Instead, a Grid window will be provided once the fitting is 
-completed. The Grid window is also accessible from the 'View' menu 
-(see Figure 2).
-
-Note that only one model is used for all the data. The initial parameter 
-values given in the control page will be used all the data fittings. If one 
-wants the FitEngine to use the initial values from the results of the 
-previous data fitting (if any), choose the 'Chain Fitting' option in the 
-Fitting menubar, which will speed up the fitting especially when you have 
-lots of, and similar, data sets.
-
-.. _Batch_Window:
-
-Batch Window
-------------
-Batch Window provides an easy way to view the fit results, i.e., plot data, 
-fits, and residuals. Batch window will be automatically shown after a batch 
-fit is finished.
-
-Once closed, it can be opened anytime from the "View" menubar item (see 
-Figure 2).
-
-.. image:: restore_batch_window.bmp
-
-Figure 2: Edit Menu: 
-
-.. _Edit_Grid:
-
-Edit Grid
----------
-
-Once a batch fit is completed, all fitted and fixed model parameters are 
-displayed to the current sheet of the batch window except the errors of the 
-parameters. To view the errors, click on a given column then under *Edit*  
-menubar item, and insert the desired parameter by selecting a menu item with 
-the appropriated label. Empty column can be inserted in the same way. A 
-column value can be customized by editing an existing empty column.
-
-To Remove column from the grid, select it, choose edit menu, and click the 
-*'remove'*  menu item. Any removed column should reinserted whenever needed.
-
-All above options are also available when right clicking on a given column 
-label(see Figure 3).
-
-*Note:*  A column always needs to be selected in order to remove or insert a 
-column in the grid.
-
-.. image:: edit_menu.bmp
-
-Figure 3: Edit Menu:
-
-.. _Save_Grid:
-
-Save Grid
----------
-To save the current page on the batch window, select the *'File'*  menubar 
-item(see Figure 4), then choose the *'Save as'*  menu item to save it as a 
-.csv file.
-
-*Note:* The grid doesn't save the data array, fits, and the array residuals.
-As a result, the 'View (fit) Results' functionality will be lost when
-reloading the saved file.
-
-Warning! To ensure accuracy of saved fit results, it is recommended to save 
-the current grid before modifying it .
-
-.. _Open_Batch_Results:
-
-Open Batch Results 
-------------------
-
-Any *csv*  file can be opened in the grid by selecting the *'Open'*  under 
-the *'File'*  menu in the Grid Window(see Figure 4). All columns in the file 
-will be displayed but insertion will not available. Insertion will be 
-available only when at least one column will be removed from the grid.
-
-.. image:: file_menu.bmp
-
-Figure 4: MenuBar:
-
-.. _Plot:
-
-Plot
-----
-
-To *plot*  a column versus another, select one column at the time, click the 
-*'Add'*  button next to the text control of X/Y -axis *Selection Range*  to 
-plot the value of this column on the X/Y axis. Alternatively, all available 
-range can be selected by clicking the column letter (eg. B). Repeat the same 
-procedure the next axis. Finally, click the *'Plot'*  button. When clicking 
-on *Add*  button, the grid will automatically fill the axis label, but 
-different labels and units can be entered in the correct controls before 
-clicking on the plot button.
-
-*X/Y -Axis Selection Range* can be edited manually. These text controls
-allow the following types of expression (operation can be + - * /, or pow)
- 
-1) if the current axis label range is a function of 1 or more columns, write 
-this type of expression
-
-constant1  * column_name1 [minimum row index :  maximum  row index] operator 
-constant2 * column_name2 [minimum row index :  maximum  row index] 
-
-Example: radius [2 : 5] -3 * scale [2 : 5] 
-
-2) if only some values of a given column are need but the range between the 
-first row and the last row used is not continuous, write the following 
-expression in the text control
-
-column_name1 [minimum row index1 :  maximum  row index1] , column_name1 
-[minimum row index2 :  maximum  row index2] 
-
-Example : radius [2 : 5] , radius [10 : 25] 
-
-Note: Both text controls ( X and Y-axis Selection Ranges) need to be filled 
-with valid entries for plotting to work. The dY-bar is optional (see Figure 5).
-
-.. image:: plot_button.bmp
-
-Figure 5: Plotting
-
-.. _View_Column_Cell:
-
-View Column/Cell(s)
--------------------
-
-Select 1 or more cells from the same column, click the 'View Fits' button to 
-display available curves. 
-
-For example, select the cells of the  'Chi2'  column, then click the  'View Fits'  
-button. The plots generates will represent the residuals  plots. 
- 
-If you select any cells of the 'Data' column and click the 'View Fits' button. 
-It generates both  data and fits in the graph (see Figure 6). 
-
-Alternatively, just click the column letter (eg. B) to choose all the 
-available data sets, then simply click the 'View Fits' button to plot the 
-data and fits. 
-
-.. image:: view_button.bmp
-
-Figure 6: View Fits
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-..  _Model_Selection:
-
-Model_Type_ 
-
-Change_Model_Parameters_
-
-Write_your_Own_Model_
-
-.. _Model_Type:
-
-Model Type
-----------
-
-Models are grouped into three classes
-
-*  *Shapes* 
-*  *Shape-Independent* 
-*  *Uncategorised*
-*  *Customized Models* 
-*  *Structure Factor*
-
-.. _Change_Model_Parameters:
-
-Change Model Parameters
------------------------
-
-To visualize model in a different window, from menu click on *Model*. Select 
-a type of model and then the name of your model.A new window will appear with 
-the plot of your model with default values. Change model's parameters on 
-*model view*  tab and view the plotted model with its new parameters.
-
-.. _Write_your_Own_Model:
-
-Write your Own Model
---------------------
-
-The custom model editors are provided from 'Fitting' menu in the menu bar. 
-See 'Custom model editor' in the side menu on left. Advanced users can write 
-your own model and save it (in .py format) into *plugin_models*  directory in 
-.sasview of your home directory (eg., username\.sasview>\plugin_models). Your 
-plugin model will be added into "<>Customized Models" on the next model 
-selection.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-..  _Model_Category_Manager:
-
-Model Category Manager
-----------------------
-
-Our SAS models are, by default, classified into 5 categories; shapes, 
-shape-independent, structure factor, and customized models, where these 
-categories (except the customized models) can be reassigned, added, and 
-removed using 'Category Manager'. Each models can also be enabled(shown)/
-disabled(hidden) from the category that they belong. The Category Manager 
-panel is accessible from the model category 'Modify' button in the fitting 
-panel or the 'View/Category Manager' menu in the menu bar (Fig. 1).
-
-1) Enable/Disable models: Check/uncheck the check boxes to enable/disable the 
-models (Fig. 2).
-
-2) Change category: Highlight a model in the list by left-clicking and click 
-the 'Modify' button. In the 'Change Category' panel, one can create/use a 
-category for the model, then click the 'Add' button. In order to delete a 
-category, select a category name and click the 'Remove Selected' button 
-(Fig. 3).
-
-3) To apply the changes made, hit the OK button. Otherwise, click the 'Cancel' 
-button (Fig. 2).
-
-.. image:: cat_fig0.bmp
-
-Fig.1
-
-.. image:: cat_fig1.bmp
-
-Fig.2
-
-.. image:: cat_fig2.bmp
-
-Fig.3
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-..  _Model_Functions:
-
-Model Functions
----------------
-
-Model Documentation <models/model_functions>
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-..  _Custom_Model_Editor:
-
-Custom Model Editor
--------------------
-
-Description_ 
-
-New_
-
-Sum_Multi_p1_p2_
-
-Advanced_
-
-Delete_
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Description:
-
-Description
------------
-
-This menu (Fitting/Edit Custom Model in the menu bar) interface is to provide 
-you an easy way to write your own custom models. The changes in a model 
-function are effective after it is re-selected from the combo-box menu.
-
-.. image:: edit_model_menu.bmp
-
-.. _New:
-
-New
----
-
-This option is used to make a new model. A model code generated by this option 
-can be viewed and further modified by the 'Advanced' option below.
-
-.. image:: new_model.bmp
-
-.. _Sum_Multi_p1_p2:
-
-Sum|Multi(p1,p2)
-----------------
-
-This option create a new sum (or multiplication) model. Fill up the (sum 
-model function) name and the description. The description will show up on 
-details button in the application. Then select the p1 or p2 model for the 
-sum/multi model, select an operator as necessary and click the Apply button 
-for activation. Hit the 'Close' button when it's done.
-
-.. image:: sum_model.bmp
-
-.. _Advanced:
-
-Advanced
---------
-
-The menu option shows all the files in the plugin_models folder. You can edit, 
-modify, and save it. It is recommended to modify only the lines with arrow 
-(-------). In the end of edit, 'Compile' and 'Run' from the menu bar to
-activate or to see the model working properly.
-
-.. _Delete:
-
-Delete
-------
-
-The menu option is to delete the custom models. Just select the file name to 
-delete.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-..  _Polydispersity_Distributions:
-
-Polydispersity Distributions
-----------------------------
-
-Calculates the form factor for a polydisperse and/or angular population of 
-particles with uniform scattering length density. The resultant form factor 
-is normalized by the average particle volume such that 
-
-P(q) = scale*\<F*F\>/Vol + bkg
-
-where F is the scattering amplitude and the\<\>denote an average over the size 
-distribution.  Users should use PD (polydispersity: this definition is 
-different from the typical definition in polymer science) for a size 
-distribution and Sigma for an angular distribution (see below).
-
-Note that this computation is very time intensive thus applying polydispersion/
-angular distrubtion for more than one paramters or increasing Npts values 
-might need extensive patience to complete the computation. Also note that 
-even though it is time consuming, it is safer to have larger values of Npts 
-and Nsigmas.
-
-The following five distribution functions are provided
-
-*  *Rectangular_Distribution_*
-*  *Array_Distribution_*
-*  *Gaussian_Distribution_*
-*  *Lognormal_Distribution_*
-*  *Schulz_Distribution_*
-
-.. _Rectangular_Distribution:
-
-Rectangular Distribution
-------------------------
-
-.. image:: pd_image001.png
-
-The xmean is the mean of the distribution, w is the half-width, and Norm is a 
-normalization factor which is determined during the numerical calculation. 
-Note that the Sigma and the half width *w*  are different.
-
-The standard deviation is
-
-.. image:: pd_image002.png
-
-The PD (polydispersity) is
-
-.. image:: pd_image003.png
-
-.. image:: pd_image004.jpg
-
-.. _Array_Distribution:
-
-Array Distribution
-------------------
-
-This distribution is to be given by users as a txt file where the array 
-should be defined by two columns in the order of x and f(x) values. The f(x) 
-will be normalized by SasView during the computation.
-
-Example of an array in the file
-
-30        0.1
-32        0.3
-35        0.4
-36        0.5
-37        0.6
-39        0.7
-41        0.9
-
-We use only these array values in the computation, therefore the mean value 
-given in the control panel, for example Ã¢â¬Ëradius = 60Ã¢â¬â¢, will be ignored.
-
-.. _Gaussian_Distribution:
-
-Gaussian Distribution
----------------------
-
-.. image:: pd_image005.png
-
-The xmean is the mean of the distribution and Norm is a normalization factor 
-which is determined during the numerical calculation.
-
-The PD (polydispersity) is
-
-.. image:: pd_image003.png
-
-.. image:: pd_image006.jpg
-
-.. _Lognormal_Distribution:
-
-Lognormal Distribution
-----------------------
-
-.. image:: pd_image007.png
-
-The /mu/=ln(xmed), xmed is the median value of the distribution, and Norm is a 
-normalization factor which will be determined during the numerical calculation. 
-The median value is the value given in the size parameter in the control panel, 
-for example, Ã¢â¬Åradius = 60Ã¢â¬ï¿œ.
-
-The PD (polydispersity) is given by /sigma/
-
-.. image:: pd_image008.png
-
-For the angular distribution
-
-.. image:: pd_image009.png
-
-The mean value is given by xmean=exp(/mu/+p2/2). The peak value is given by 
-xpeak=exp(/mu/-p2).
-
-.. image:: pd_image010.jpg
-
-This distribution function spreads more and the peak shifts to the left as the 
-p increases, requiring higher values of Nsigmas and Npts.
-
-.. _Schulz_Distribution:
-
-Schulz Distribution
--------------------
-
-.. image:: pd_image011.png
-
-The xmean is the mean of the distribution and Norm is a normalization factor
-which is determined during the numerical calculation.
-
-The z = 1/p2Ã¢â¬â 1.
-
-The PD (polydispersity) is
-
-.. image:: pd_image012.png
-
-Note that the higher PD (polydispersity) might need higher values of Npts and 
-Nsigmas. For example, at PD = 0.7 and radisus = 60 A, Npts >= 160, and 
-Nsigmas >= 15 at least.
-
-.. image:: pd_image013.jpg
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Smearing_Computation:
-
-Smearing Computation
---------------------
-
-Slit_Smearing_ 
-
-Pinhole_Smearing_
-
-2D_Smearing_
-
-.. _Slit_Smearing:
-
-Slit Smearing
--------------
-
-The sit smeared scattering intensity for SAS is defined by
-
-.. image:: sm_image002.gif
-
-where Norm =
-
-.. image:: sm_image003.gif
-
-Equation 1
-
-The functions |inlineimage004| and |inlineimage005|
-refer to the slit width weighting function and the slit height weighting 
-determined at the q point, respectively. Here, we assumes that the weighting 
-function is described by a rectangular function, i.e.,
-
-.. image:: sm_image006.gif
-
-Equation 2
-
-and
-
-.. image:: sm_image007.gif
-
-Equation 3
-
-so that |inlineimage008| |inlineimage009| for |inlineimage010| and u.
-
-The |inlineimage011| and |inlineimage012| stand for
-the slit height (FWHM/2) and the slit width (FWHM/2) in the q space. Now the 
-integral of Equation 1 is simplified to
-
-.. image:: sm_image013.gif
-
-Equation 4
-
-Numerical Implementation of Equation 4
---------------------------------------
-
-Case 1
-------
-
-For |inlineimage012| = 0 and |inlineimage011| = constant.
-
-.. image:: sm_image016.gif
-
-For discrete q values, at the q values from the data points and at the q 
-values extended up to qN= qi + |inlineimage011| the smeared 
-intensity can be calculated approximately
-
-.. image:: sm_image017.gif
-
-Equation 5
-
-|inlineimage018| = 0 for *Is* in *j* < *i* or *j* > N-1*.
-
-Case 2
-------
-
-For |inlineimage012| = constant and |inlineimage011| = 0.
-
-Similarly to Case 1, we get
-
-|inlineimage019| for qp= qi- |inlineimage012| and qN= qi+ |inlineimage012|. |inlineimage018| = 0
-for *Is* in *j* < *p* or *j* > *N-1*.
-
-Case 3
-------
-
-For |inlineimage011| = constant and 
-|inlineimage011| = constant.
-
-In this case, the best way is to perform the integration, Equation 1, 
-numerically for both slit height and width. However, the numerical integration 
-is not correct enough unless given a large number of iteration, say at least 
-10000 by 10000 for each element of the matrix, W, which will take minutes and 
-minutes to finish the calculation for a set of typical SAS data. An 
-alternative way which is correct for slit width << slit hight, is used in 
-SasView. This method is a mixed method that combines method 1 with the 
-numerical integration for the slit width.
-
-.. image:: sm_image020.gif
-
-Equation 7
-
-for qp= qi- |inlineimage012| and
-qN= qi+ |inlineimage012|. |inlineimage018| = 0 for
-*Is* in *j* < *p* or *j* > *N-1*.
-
-.. _Pinhole_Smearing:
-
-Pinhole Smearing
-----------------
-
-The pinhole smearing computation is done similar to the case above except 
-that the weight function used is the Gaussian function, so that the Equation 6 
-for this case becomes
-
-.. image:: sm_image021.gif
-
-Equation 8
-
-For all the cases above, the weighting matrix *W* is calculated when the 
-smearing is called at the first time, and it includes the ~ 60 q values 
-(finely binned evenly) below (\>0) and above the q range of data in order 
-to cover all data points of the smearing computation for a given model and 
-for a given slit size. The *Norm*  factor is found numerically with the 
-weighting matrix, and considered on *Is* computation.
-
-.. _2D_Smearing:
-
-2D Smearing
------------ 
-
-The 2D smearing computation is done similar to the 1D pinhole smearing above 
-except that the weight function used was the 2D elliptical Gaussian function
-
-.. image:: sm_image022.gif
-
-Equation 9
-
-In Equation 9, x0 = qcos/theta/ and y0 = qsin/theta/, and the primed axes 
-are in the coordinate rotated by an angle /theta/ around the z-axis (below) 
-so that xÃ¢â¬â¢0= x0cos/theta/+y0sin/theta/ and yÃ¢â¬â¢0= -x0sin/theta/+y0cos/theta/.
-
-Note that the rotation angle is zero for x-y symmetric elliptical Gaussian 
-distribution. The A is a normalization factor.
-
-.. image:: sm_image023.gif
-
-Now we consider a numerical integration where each bins in /theta/ and R are 
-*evenly* (this is to simplify the equation below) distributed by /delta//theta/ 
-and /delta/R, respectively, and it is assumed that I(xÃ¢â¬â¢, yÃ¢â¬â¢) is constant 
-within the bins which in turn becomes
-
-.. image:: sm_image024.gif
-
-Equation 10
-
-Since we have found the weighting factor on each bin points, it is convenient 
-to transform xÃ¢â¬â¢-yÃ¢â¬â¢ back to x-y coordinate (rotating it by -/theta/ around z 
-axis). Then, for the polar symmetric smear
-
-.. image:: sm_image025.gif
-
-Equation 11
-
-where
-
-.. image:: sm_image026.gif
-
-while for the x-y symmetric smear
-
-.. image:: sm_image027.gif
-
-Equation 12
-
-where
-
-.. image:: sm_image028.gif
-
-Here, the current version of the SasView uses Equation 11 for 2D smearing 
-assuming that all the Gaussian weighting functions are aligned in the polar 
-coordinate.
-
-In the control panel, the higher accuracy indicates more and finer binnng 
-points so that it costs more in time.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Polarisation_Magnetic_Scattering:
-
-Polarisation/Magnetic Scattering
---------------------------------
-
-Magnetic scattering is implemented in five (2D) models 
-
-*  *SphereModel*
-*  *CoreShellModel*
-*  *CoreMultiShellModel*
-*  *CylinderModel*
-*  *ParallelepipedModel*
-
-In general, the scattering length density (SLD) in each regions where the 
-SLD (=/beta/) is uniform, is a combination of the nuclear and magnetic SLDs and 
-depends on the spin states of the neutrons as follows. For magnetic scattering, 
-only the magnetization component, *M*perp, perpendicular to the scattering 
-vector *Q* contributes to the the magnetic scattering length.
-
-.. image:: mag_vector.bmp
-
-The magnetic scattering length density is then
-
-.. image:: dm_eq.gif
-
-where /gamma/ = -1.913 the gyromagnetic ratio, /mu/B is the Bohr magneton, r0 
-is the classical radius of electron, and */sigma/* is the Pauli spin. For 
-polarised neutron, the magnetic scattering is depending on the spin states. 
-
-Let's consider that the incident neutrons are polarized parallel (+)/
-anti-parallel (-) to the x' axis (See both Figures above). The possible 
-out-coming states then are + and - states for both incident states
-
-Non-spin flips: (+ +) and (- -)
-Spin flips:     (+ -) and (- +)
-
-.. image:: M_angles_pic.bmp
-
-Now, let's assume that the angles of the *Q*  vector and the spin-axis (x') 
-against x-axis are /phi/ and /theta/up, respectively (See Figure above). Then, 
-depending upon the polarisation (spin) state of neutrons, the scattering length 
-densities, including the nuclear scattering length density (/beta/N) are given 
-as, for non-spin-flips
-
-.. image:: sld1.gif
-
-for spin-flips
-
-.. image:: sld2.gif
-
-where
-
-.. image:: mxp.gif
-
-.. image:: myp.gif
-
-.. image:: mzp.gif
-
-.. image:: mqx.gif
-
-.. image:: mqy.gif
-
-Here, the M0x, M0y and M0z are the x, y and z components of the magnetization 
-vector given in the xyz lab frame. The angles of the magnetization, /theta/M 
-and /phi/M as defined in the Figure (above)
-
-.. image:: m0x_eq.gif
-
-.. image:: m0y_eq.gif
-
-.. image:: m0z_eq.gif
-
-The user input parameters are M0_sld = DMM0, Up_theta = /theta/up, 
-M_theta = /theta/M, and M_phi = /phi/M. The 'Up_frac_i' and 'Up_frac_f' are 
-the ratio
-
-(spin up)/(spin up + spin down)
-
-neutrons before the sample and at the analyzer, respectively.
-
-*Note:* The values of the 'Up_frac_i' and 'Up_frac_f' must be in the range
-between 0 and 1.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Key_Combinations:
-
-Key Combinations
-----------------
-
-Copy_Paste_
-
-Bookmark_
-
-Graph_Context_Menu_
-
-FTolerance_
-
-.. _Copy_Paste:
-
-Copy & Paste
-------------
-
-To copy the parameter values in a Fit(Model) panel to the clipboard:
-
-*Ctrl(Cmd on MAC) + Left(Mouse)Click*  on the panel.
-
-To paste the parameter values to a Fit(Model)panel from the clipboard:
-
-*Ctrl(Cmd on MAC) + Shift + Left(Mouse)Click*  on the panel.
-
-If this operation is successful, it will say so in the info line at the 
-bottom of the SasView window.
-
-.. _Bookmark:
-
-Bookmark
---------
-
-Bookmark of a fit-panel or model-panel status:
-
-*(Mouse)Right-Click*  and select the bookmark in the popup list.
-
-.. _Graph_Context_Menu:
-
-Graph Context Menu
-------------------
-
-To get the graph context menu to print, copy, save data, (2D)average, etc.:
-
-*Locate the mouse point on the plot to highlight and *(Mouse) Right Click* 
-to bring up the full menu.
-
-.. _FTolerance: 
-
-FTolerance (SciPy)
-------------------
-
-To change the ftol value of the Scipy FitEngine (leastsq):
-
-First, make sure that the Fit panel has data and a model selected.
-
-*Ctrl(Cmd on MAC) + Shift + Alt + Right(Mouse)Click*  on the panel.
-
-Then, set up the value in the dialog panel.
-
-If this operation is successful, the new ftol value will be displayed in the 
-info line at the bottom of the SV window.Note that increasing the ftol value 
-may cause for the fitting to terminate with higher |chi| sq.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Status_Bar_Help:
-
-Status Bar Help
----------------
-
-Message_Warning_Hint_ 
-
-Console_
-
-.. _Message_Warning_Hint:
-
-Message/Warning/Hint
---------------------
-
-The status bar located at the bottom of the application frame, displays 
-messages, hints, warnings and errors.
-
-.. _Console:
-
-Console
--------
-
-Select *light bulb/info icon*  button in the status bar at the bottom of the 
-application window to display available history. During a long task, the 
-console can also help users to understand the status in progressing.
Index: src/sas/perspectives/fitting/media/glossaryhelp.html
===================================================================
--- src/sas/perspectives/fitting/media/glossaryhelp.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/fitting/media/glossaryhelp.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,19 @@
+<html>
+
+<body bgcolor="#ffffff">
+<h4>Table of Contents</h4>
+
+<ul>
+<li><a href="load_data_help.html">Load a File</a></li>
+<li><a href="single_fit_help.html">Single fit</a></li>
+<li><a href="simultaneous_fit_help.html">Simultaneous fit</a></li>
+<li><a href="change_scale_help.html">Change scale</a></li>
+<li><a href="reset_Graph_help.html">Reset graph</a></li>
+<li><a href="save_data_help.html">Save data</a></li>
+<li><a href="model_use_help.html">visualize model</a></li>
+<li><a href="sld_calculator_help.html">SLD Calculator</a></li>
+<li><a href ="doc/averaging_help.html">Data Averaging</a><br></li>
+</ul>
+
+</body>
+</html>
Index: src/sas/perspectives/fitting/media/help.html
===================================================================
--- src/sas/perspectives/fitting/media/help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/fitting/media/help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,11 @@
+<html>
+
+<frameset cols="120,*">
+
+<frame src="model_use_help.html">
+<frame src="load_data_help.html" name="showframe">
+
+</frameset>
+
+</html>
+
Index: src/sas/perspectives/fitting/media/key_help.html
===================================================================
--- src/sas/perspectives/fitting/media/key_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/fitting/media/key_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,47 @@
+<html>
+<body>
+
+<h4>Key Combination</h4>
+<ul>
+<li><a href="#Copy">Copy & Paste</a></li>
+<li><a href="#Bookmark">Bookmark</a></li>
+<li><a href="#Ftol">FTolerance (Scipy)</a></li>
+</ul>
+<h5><a name="Copy">Copy & Paste</a></h5>
+<p>
+<h6>To copy the parameter values in a Fit(Model)panel to the clipboard:</h6></p>
+<p> <b>Ctrl(Cmd on MAC) + Left(Mouse)Click</b> on the panel.</p>
+<p>
+<h6>To paste the parameter values to a Fit(Model)panel from the clipboard:</h6></p>
+<p> <b>Ctrl(Cmd on MAC) + Shift + Left(Mouse)Click</b> on the panel.</p>
+<p> If this operation is successful, it will say so in the info line 
+at the bottom of the SV window.<p>
+<p>
+
+<p>
+<h5><a name="Bookmark">Bookmark</a></h5>
+<p>
+<h6>Bookmark of a fit-panel or model-panel status:</h6></p>
+<p> <b>(Mouse)Right-Click</b> and select the bookmark in the popup list.</p>
+
+<p>
+<h5><a name="GraphMenu">Graph Context Menu</a></h5>
+<p>
+<h6>To get the graph context menu to print, copy, save data, (2D)average, etc.:</h6></p>
+<p> <b>Locate the mouse point on the plot to highlight and 
+<b>(Mouse) Right Click</b> to bring up the full menu.</p>
+
+
+<h5><a name="Ftol">FTolerance (Scipy)</a></h5>
+<p>
+<h6>To change the ftol value of the Scipy FitEngine (leastsq):</h6></p>
+<p>First, make sure that the Fit panel has data and a model selected.
+<p> <b>Ctrl(Cmd on MAC) +  Shift + Alt + Right(Mouse)Click</b> on the panel.</p>
+<p>Then, set up the value in the dialog panel.</p>
+<p> If this operation is successful, the new ftol value will be displayed 
+in the info line at the bottom of the SV window.<p>
+<p> Note that increasing the ftol value may cause for the fitting to terminate 
+with higher chisqr.</p>
+</body>
+</html>
+
Index: src/sas/perspectives/fitting/media/load_data_help.html
===================================================================
--- src/sas/perspectives/fitting/media/load_data_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/fitting/media/load_data_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,13 @@
+<html>
+<body>
+
+<p>
+<h4>Loading Data File/Folder</h4>
+From Menu go to <b>Data</b> -><b>Load Data File(or Folder)</b>. Select a file/folder from the menu bar and click
+on Open button.
+Data contained in the file will be displayed. To cancel the loading click on <b>cancel</b>.
+In case a file can not be loaded, an error message will be displayed on the statusbar.
+</p>
+
+</body>
+</html>
Index: src/sas/perspectives/fitting/media/model_editor_help.html
===================================================================
--- src/sas/perspectives/fitting/media/model_editor_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/fitting/media/model_editor_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,58 @@
+<html>
+<body>
+<h4>Edit Custom Model</h4>
+<ul>
+<li><a href="#description">Description</a></li>
+<li><a href="#new">New</a></li>
+<li><a href="#sum">Sum|Multi(p1,p2)</a></li>
+<li><a href="#advanced">Advanced</a></li>
+<li><a href="#delete">Delete</a></li>
+
+</ul>
+<h5><a name="description">Description</a></h5>
+<p>
+This menu (Fitting/Edit Custom Model in the menu bar) interface is to provide you an easy way to write your own custom models.
+The changes in a model function are effective after it is re-selected from the combo-box menu. 
+</p>
+<br/>
+<img src="edit_model_menu.bmp"/>
+<br/>
+<br/>
+<h5><a name="new">New</a></h5>
+<p>
+This option is used to make a new model. 
+A model code generated by this option can be viewed and further modified by the 'Advanced' option below.
+</p>
+<br/>
+<img src="new_model.bmp"/>
+<br/>
+<br/>
+<h5><a name="sum">Sum|Multi(p1,p2)</a></h5>
+<p>
+This option create a new sum (or multiplication) model. Fill up the (sum model function) name and the description. 
+The description will show up on details button in the application.
+Then select the p1 or p2 model for the sum/multi model, 
+select an operator as necessary and click the Apply button for activation. 
+Hit the 'Close' button when it's done.
+</p>
+<br/>
+<img src="sum_model.bmp"/>
+<br/>
+<br/>
+<h5><a name="advanced">Advanced</a></h5>
+<p>
+The menu option shows all the files in the plugin_models folder. 
+You can edit, modify, and save it.
+It is recommended to modify only the lines with arrow (## &#60-----). 
+In the end of edit, 'Compile' and 'Run' from the menu bar to activate or to see the model working properly.
+</p>
+
+
+<h5><a name="delete">Delete</a></h5>
+<p>
+The menu option is to delete the custom models. Just select the file name to delete.
+</p>
+
+</body>
+
+</html>
Index: src/sas/perspectives/fitting/media/model_use_help.html
===================================================================
--- src/sas/perspectives/fitting/media/model_use_help.html	(revision b9a5f0eb8e8cbff8f8d934bbfa4ea18168141e13)
+++ src/sas/perspectives/fitting/media/model_use_help.html	(revision b9a5f0eb8e8cbff8f8d934bbfa4ea18168141e13)
@@ -0,0 +1,37 @@
+<html>
+<body>
+
+<h4>Model Selection</h4>
+<ul>
+<li><a href="#Model type">Model type</a></li>
+<li><a href="#Visualize">Change Model's parameters</a></li>
+<li><a href="#Plugin"> Write your own model</a></li>
+</ul>
+
+<h5><a name="Model types">Model type</a></h5>
+<p> Models are grouped into three classes:
+	<ul>
+	<li><b> Shapes</b>: Regular  geometric shapes</li>
+	<li><b> Shape- Independent</b></li>
+	<li><b> Customized Models</b> : models written by the user</li>
+	<li><b> Structure Factor</b> </li>
+	</ul>
+</p>
+
+<h5><a name="Visualize">Change Model's parameters</a></h5>
+<p>
+	To visualize model in a different window, from menu click on <b>Model</b>.Select
+	a type of model and then the name of your model.A new window will appear with the plot 
+	of your model with default values. Change model's parameters on <b> model view</b> tab
+	and view the plotted model with its new parameters. 
+</p>
+
+<h5><a name="Plugin"> Write your own model</a></h5>
+<p>The custom model editors are provided from 'Fitting' menu in the menu bar. 
+	See 'Custom model editor' in the side menu on left.
+	Advanced users can write your own model and save it (in .py format) into <b>plugin_models</b> directory
+	in .sasview of your home directory (eg., username\.sasview>\plugin_models). You plugin
+	model will be added into "<>Customized Models</>"  on the next model selection.
+</p>
+</body>
+</html>
Index: src/sas/perspectives/fitting/media/simultaneous_fit_help.html
===================================================================
--- src/sas/perspectives/fitting/media/simultaneous_fit_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/fitting/media/simultaneous_fit_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,38 @@
+<html>
+<body>
+
+<h4>Simultaneous Fit</h4>
+<p>
+	This fitting option enables to set a number of the constraints between the parameters of fitting(s).
+	It requires one or more FitPages with a data and a model set for the fitting, 
+	and performs multiple fittings given by the FitPage(s).
+	The Complex (ParkMC) FitEngine will be used automatically.
+</p>
+<ul>
+<li><a href="#noconstraint">Simultaneous Fit without constraint</a></li>
+<li><a href="#constraint">Simultaneous Fit with constraint</a></li>
+</ul>
+
+<h5><a name="noconstraint">Simultaneous Fit without constraint</a></h5>
+<p> 
+	Assuming some FitPages are already set up, check the checkboxes of the model_data rows to fit.
+	And click the 'Fit' button. 
+	The results will return to each FitPages. 
+	<br/>Note that the chi2/Npts returned is the sum of the chi2/Npts of each fits. 
+	If one needs the chi2 value only for a page, click the 'Compute' button in the FitPage to recalculate.
+	
+</p>
+
+<h5><a name="constraint">Simultaneous Fit with constraint</a></h5>
+<p>
+	Enter constraint in the text control next to  <b>constraint fit</b> button.
+	Constraint should be of type model1 parameter name = f(model2 parameter name)for example, M0.radius=2*M1.radius.
+	Many constraints can be entered for a single fit.Each of them should be separated 
+	by a newline charater or ";"
+	The easy setup can generate many constraint inputs easily when the selected two models are the same type.
+	<br/>Note that the chi2/Npts returned is the sum of the chi2/Npts of each fits. 
+	If one needs the chi2 value only for one fit, click the 'Compute' button in the FitPage to recalculate.
+</p>
+
+</body>
+</html>
Index: src/sas/perspectives/fitting/media/single_fit_help.html
===================================================================
--- src/sas/perspectives/fitting/media/single_fit_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/fitting/media/single_fit_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,27 @@
+<html>
+<body>
+
+<h4>Single Fit</h4>
+<ul>
+<li><a href="#fitpage">Single Fit</a></li>
+
+</ul>
+
+<h5><a name="fitpage">Single Fit</a></h5>
+<p> 
+	One of two fit-engines can be chosen from the Fitting menu bar. The Simple Fit-engine uses Scipy's leasqr 
+	and the Complex Fit-Engine is a custom optimizer that provides a better chance 
+	to find the global minimum of the chi2 but that requires longer computation time.
+	In order to set a data to a control panel (FitPage), see the "DataLoader Help".
+	Once a data set to the FiPage, select a model from the combo box. 
+	The default parameters of the model will be display. Set initial parameters if need.
+	Check and uncheck parameters to fit/fix. Click the <b> 'Fit'</b> button.
+	When the fitting is finished, the resultant parameter values will be displayed with the errors. If a error is missing, it generally means 
+	that the corresponding parameter is not very depending on the model. The chisq/Npt_fit and the plot associated
+	with the fit operation will be also updated.
+	
+</p>
+
+
+</body>
+</html>
Index: src/sas/perspectives/fitting/media/status_bar_help.html
===================================================================
--- src/sas/perspectives/fitting/media/status_bar_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/fitting/media/status_bar_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,25 @@
+<html>
+<body>
+
+<h4>Status Bar Help</h4>
+<ul>
+<li><a href="#message">Message, Warning, Hint</a></li>
+<li><a href="#console">Console</a></li>
+</ul>
+
+<h5><a name="message">Message, Warning, Hint</a></h5>
+<p> 
+The status bar located at the bottom of the application frame, displays messages,
+hints, warnings and errors.
+</p>
+
+<h5><a name="console">Console</a></h5>
+<p>
+Select <b> light bulb/info icon </b> button in the status bar at the bottom of the application window 
+to display available history.
+During a long task, the console can also help users to understand the status in progressing.
+</p>
+
+
+</body>
+</html>
Index: src/sas/perspectives/invariant/media/invariant_help.html
===================================================================
--- src/sas/perspectives/invariant/media/invariant_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
+++ src/sas/perspectives/invariant/media/invariant_help.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
@@ -0,0 +1,395 @@
+<html>
+
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
+<meta name=Generator content="Microsoft Word 12 (filtered)">
+<style>
+<!--
+ /* Font Definitions */
+ @font-face
+	{font-family:Wingdings;
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+@font-face
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+	margin-right:0in;
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+	font-family:"Calibri","sans-serif";}
+a:link, span.MsoHyperlink
+	{color:blue;
+	text-decoration:underline;}
+a:visited, span.MsoHyperlinkFollowed
+	{color:purple;
+	text-decoration:underline;}
+p
+	{margin-right:0in;
+	margin-left:0in;
+	font-size:12.0pt;
+	font-family:"Times New Roman","serif";}
+p.MsoAcetate, li.MsoAcetate, div.MsoAcetate
+	{mso-style-link:"Balloon Text Char";
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+	margin-bottom:.0001pt;
+	font-size:8.0pt;
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+p.MsoListParagraph, li.MsoListParagraph, div.MsoListParagraph
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+	font-family:"Calibri","sans-serif";}
+p.MsoListParagraphCxSpFirst, li.MsoListParagraphCxSpFirst, div.MsoListParagraphCxSpFirst
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+p.MsoListParagraphCxSpMiddle, li.MsoListParagraphCxSpMiddle, div.MsoListParagraphCxSpMiddle
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+p.MsoListParagraphCxSpLast, li.MsoListParagraphCxSpLast, div.MsoListParagraphCxSpLast
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+span.BalloonTextChar
+	{mso-style-name:"Balloon Text Char";
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+.MsoPapDefault
+	{margin-bottom:10.0pt;
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+@page Section1
+	{size:8.5in 11.0in;
+	margin:1.0in 1.0in 1.0in 1.0in;}
+div.Section1
+	{page:Section1;}
+ /* List Definitions */
+ ol
+	{margin-bottom:0in;}
+ul
+	{margin-bottom:0in;}
+-->
+</style>
+
+</head>
+
+<body lang=EN-US link=blue vlink=purple>
+
+<div class=Section1>
+
+<p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;line-height:normal'><span
+style='font-family:Symbol'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><b><span style='font-family:"Times New Roman","serif"'><a
+href="#invariant">Scattering Invariant</a></span></b></p>
+
+<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;line-height:normal'><span
+style='font-family:Symbol'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><a href="#volume"><b><span style='font-family:"Times New Roman","serif"'>Volume
+Fraction</span></b></a></p>
+
+<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;line-height:normal'><span
+style='font-family:Symbol'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><a href="#surface"><b><span style='font-family:"Times New Roman","serif"'>Specific
+Surface Area</span></b></a></p>
+
+<p class=MsoListParagraphCxSpLast style='text-indent:-.25in;line-height:normal'><span
+style='font-family:Symbol'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><a href="#howto"><b><span style='font-family:"Times New Roman","serif"'>How
+to Compute</span></b></a></p>
+
+<p class=MsoNormal style='line-height:normal'><b><span style='font-family:"Times New Roman","serif"'>The
+scattering <a name=invariant>invariant</a> (Q*)</span></b><span
+style='font-family:"Times New Roman","serif"'> </span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>The
+scattering invariant (Q*) is a model-independent quantity that can be easily
+calculated from </span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>scattering
+data. For two phase systems, the scattering invariant, Q*, is defined as the
+integral of</span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'> the
+square of the wave transfer (q) multiplied by the scattering cross section over
+the full range of q. </span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>Q*
+is given by the following equation, </span></p>
+
+<p class=MsoNormal style='line-height:normal'>
+
+<table cellpadding=0 cellspacing=0 align=left>
+ <tr>
+  <td width=2 height=4></td>
+ </tr>
+ <tr>
+  <td></td>
+  <td><img width=127 height=35 src="image001.gif"></td>
+ </tr>
+</table>
+
+<span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<p class=MsoNormal style='line-height:150%'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<br clear=ALL>
+
+<p class=MsoNormal style='line-height:150%'><span style='font-family:"Times New Roman","serif"'>This
+model independent quantity (Q*) is calculated from the scattering data that can
+be used to determine the volume fraction and the specific area of the sample
+under consideration. &nbsp;These quantities&nbsp;are useful in their own right
+and can be used in&nbsp;further analysis. With this scattering invariant module
+users will also be able to determine the consistency of those properties
+between data.&nbsp; There is no real data defined from zero to infinity, there
+usually have limited range. Q* is not really computed from zero to infinity.
+Our maximum q range is 1e-5 ~ 10 (1/A). The lower and/or higher q range than
+data given can be extrapolated by fitting some data nearby.</span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>The
+scattering invariant is computed as follow:</span></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;line-height:normal'><span
+style='font-family:"Arial","sans-serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><i><span style='font-family:"Times New Roman","serif"'>I(q)</span></i><span
+style='font-family:"Times New Roman","serif"'> =  <i>I(q)</i> w/o background :
+If the data includes a background, user sets the value to subtract the background
+for the Q* computation.</span></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;line-height:normal'><span
+style='font-family:"Arial","sans-serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'>Reset<i>
+I(q)  </i></span><span style='font-family:"Times New Roman","serif"'>= <i>I(q)*
+scaling factor </i>, delta<i>I(q) =  </i>delta<i>I(q)*scaling factor</i> : If
+non-zero scaling factor is given, it will be considered.</span></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;line-height:normal'><span
+style='font-family:"Arial","sans-serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'> Invariant:</span></p>
+
+<p class=MsoNormal style='margin-left:.25in;line-height:normal'>
+
+<table cellpadding=0 cellspacing=0 align=left>
+ <tr>
+  <td width=45 height=12></td>
+ </tr>
+ <tr>
+  <td></td>
+  <td><img width=127 height=35 src="image001.gif"></td>
+ </tr>
+</table>
+
+<span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<br clear=ALL>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'> </span></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
+style='font-family:"Times New Roman","serif"'>            where, <i>g =q</i>
+for the pinhole geometry and <i>g =<sub> </sub>q<sub>v</sub></i>(the slit
+height) for the slit geometry which can be given in data or as a value.</span></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;line-height:normal'><span
+style='font-family:"Arial","sans-serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'>&nbsp;Higher
+q-region (&gt;= qmax in data): </span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>            Power
+law (w/o background term) function = C/q<sup>4</sup> will be used </span></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
+style='font-family:"Times New Roman","serif"'>            where the constant
+C(=2pi(delta(rho))S<sub>v</sub>) is to be found by fitting part of data with
+the range of q<sub>N-m</sub>  to q<sub>N</sub> (m&lt;N).</span></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;line-height:normal'><span
+style='font-family:"Arial","sans-serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'> Lower
+q-region (&lt;= qmin in data): </span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>            Guinier
+function = <i>I<sub>0</sub>exp(-R<sub>g</sub><sup>2</sup>q<sup>2</sup>/3)</i>
+where I<sub>0</sub> and R<sub>g</sub> are obtained by fitting, </span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>            similarly
+to the high q region above.</span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>            Power
+law can also be used.</span></p>
+
+<p class=MsoNormal><span style='font-family:"Times New Roman","serif"'>&nbsp;</span><b>The
+<a name=volume>volume </a>fraction</b>: </p>
+
+<p class=MsoNormal style='line-height:normal'><span style='position:absolute;
+z-index:3;margin-left:1px;margin-top:9px;width:161px;height:47px'><img
+width=161 height=47 src="image002.gif"></span><span
+style='font-family:"Times New Roman","serif"'> </span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'> </span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>where
+delta(rho) is the SLD contrast of which value is given by users.</span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='position:absolute;
+z-index:4;margin-left:1px;margin-top:29px;width:101px;height:45px'><img
+width=101 height=45 src="image003.gif"></span><span
+style='font-family:"Times New Roman","serif"'>Thus,  </span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'> where
+0 =&lt; <i>A</i> =&lt;1/4 in order for these values to be physically valid.</span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<p class=MsoNormal style='line-height:normal'><b><span style='font-family:"Times New Roman","serif"'>The
+<a name=surface>specific surface area </a>:</span></b></p>
+
+<p class=MsoNormal style='line-height:normal'>
+
+<table cellpadding=0 cellspacing=0 align=left>
+ <tr>
+  <td width=1 height=3></td>
+ </tr>
+ <tr>
+  <td></td>
+  <td><img width=184 height=47 src="image004.gif"></td>
+ </tr>
+</table>
+
+<b><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></b></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<br clear=ALL>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'> where
+<i>A</i> and <i>Q<sup>*</sup></i> are obtained from previous sections, and the
+Porod constant <i>C<sub>p</sub></i> is given by users. </span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<p class=MsoNormal style='line-height:normal'><b><span style='font-family:"Times New Roman","serif"'>Definitions:</span></b><span
+style='font-family:"Times New Roman","serif"'> </span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>Q&nbsp;:
+the magnitude of neutron (or X-ray) momentum transfer vector.</span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>I(Q):
+the scattering intensity as a function of the momentum transfer Q.</span></p>
+
+<p class=MsoNormal style='line-height:150%'><span style='font-family:"Times New Roman","serif"'>Invariant
+total is the sum of the invariant calculated from datas q range and the
+invariant resulting from extrapolation at low q range and at high q range if
+considered.</span></p>
+
+<p class=MsoNormal style='line-height:150%'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+<p class=MsoNormal style='line-height:normal'><a name=reference><b><span
+style='font-family:"Times New Roman","serif"'>Reference</span></b></a><b><span
+style='font-family:"Times New Roman","serif"'>: </span></b></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>Porod's
+chapter (2) from  O. Glatter and O. Kratky, &quot;Small Angle X-Ray
+Scattering&quot;, Academic Press, New York, 1982</span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>Otto's
+web page: </span><a href="http://physchem.kfunigraz.ac.at/sm/"><span
+style='font-family:"Times New Roman","serif"'>http://physchem.kfunigraz.ac.at/sm/</span></a><span
+style='font-family:"Times New Roman","serif"'> </span></p>
+
+<p class=MsoNormal style='line-height:normal'><a name=howto><b><span
+style='font-family:"Times New Roman","serif"'>HowTo</span></b></a><b><span
+style='font-family:"Times New Roman","serif"'>:</span></b></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
+style='font-family:"Times New Roman","serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span>i)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'>Loading data
+to the panel: Open the data file from File in the menu bar. Select loaded data
+from a plot panel by highlighting that it until its color turns yellow. Then
+right click on that the data and selects the option Compute Invariant. The
+application automatically computes the invariant value if the data loaded is
+valid.</span></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
+style='font-family:"Times New Roman","serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span>ii)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'>To subtract a
+background or/and to rescale the data, type the values in Customized Input
+box.  </span></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
+style='font-family:"Times New Roman","serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;
+</span>iii)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'>If you want
+to calculate the volume fraction and the specific surface area, type the
+optional inputs in the customized input box, and then press Compute button.</span></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
+style='font-family:"Times New Roman","serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;
+</span>iv)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'>The invariant
+can also be calculated including the outside of the data Q range:  To include
+the lower Q and/or the higher Q range, check in the enable extrapolation check
+box in Extrapolation box. If the power low is chosen, the power (exponent)
+can be either held or fitted by checking the corresponding radio button.  The
+Npts that is being used for the extrapolation can be specified.</span></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
+style='font-family:"Times New Roman","serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span>v)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'>If the
+invariant calculated from the extrapolated region is too large, it will be warn
+in red at the top of the panel, which means that your data is not proper to
+calculate the invariant.</span></p>
+
+<p class=MsoNormal style='margin-left:.5in;text-indent:-.5in;line-height:normal'><span
+style='font-family:"Times New Roman","serif"'><span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;
+</span>vi)<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
+</span></span><span style='font-family:"Times New Roman","serif"'>The details
+of the calculation is available by clicking the Details button in the middle
+of the panel. </span></p>
+
+<p class=MsoNormal align=center style='text-align:center;line-height:normal'><span
+style='font-family:"Times New Roman","serif"'><img border=0 width=572
+height=449 id="Object 4" src="image005.gif"></span></p>
+
+<p class=MsoNormal style='line-height:normal'><span style='font-family:"Times New Roman","serif"'>&nbsp;</span></p>
+
+</div>
+
+</body>
+
+</html>
Index: c/sas/perspectives/invariant/media/invariant_help.rst
===================================================================
--- src/sas/perspectives/invariant/media/invariant_help.rst	(revision ec392464eef959a5c2e87e6a72ed72fd7e947a07)
+++ 	(revision )
@@ -1,172 +1,0 @@
-.. invariant_help.rst
-
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-Invariant Calculation Perspective
-=================================
-
-Scattering_Invariant_
-
-Volume_Fraction_
-
-Specific_Surface_Area_
-
-Definitions_
-
-Reference_
-
-How_to_Use_
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Scattering_Invariant:
-
-Scattering Invariant
---------------------
-
-The scattering invariant (Q*) is a model-independent quantity that can be 
-easily calculated from scattering data.
-
-For two phase systems, the scattering invariant, Q*, is defined as the 
-integral of the square of the wave transfer (q) multiplied by the scattering 
-cross section over the full range of q.
-
-Q* is given by the following equation
-
-.. image:: image001.gif
-
-This model independent quantity (Q*) is calculated from the scattering data 
-that can be used to determine the volume fraction and the specific area of the 
-sample under consideration.
-
-These quantities are useful in their own right and can be used in further 
-analysis. With this scattering invariant module users will also be able to 
-determine the consistency of those properties between data. There is no real 
-data defined from zero to infinity, there usually have limited range.
-
-Q* is not really computed from zero to infinity. Our maximum q range is 
-1e-5 ~ 10 (1/Angstrom). The lower and/or higher q range than data given can be 
-extrapolated by fitting some data nearby.
-
-The scattering invariant is computed as follows
-
-*I(q)* = *I(q)*  w/o background : If the data includes a background, user sets 
-the value to subtract the background for the Q* computation.
-
-Reset *I(q)* = *I(q)* scaling factor* , delta *I(q) =*  delta *I(q)*scaling 
-factor* : If non-zero scaling factor is given, it will be considered.
-
-Invariant
-
-.. image:: image001.gif
-
-where *g =q*  for the pinhole geometry and *g =qv*  (the slit height) for the 
-slit geometry which can be given in data or as a value.
-
-Higher q-region (\>= qmax in data)
-
-Power law (w/o background term) function = C/q4will be used
-
-where the constant C(=2pi(delta(rho))Sv) is to be found by fitting part of 
-data with the range of qN-mto qN(m\<N).
-
-Lower q-region (\<= qmin in data):
-
-Guinier function = *I0exp(-Rg2q2/3)*  where I0and Rgare obtained by fitting,
-
-similarly to the high q region above.
-
-Power law can also be used.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Volume_Fraction:
-
-Volume Fraction
----------------
-
-.. image:: image002.gif
-
-where delta(rho) is the SLD contrast of which value is given by users.
-
-.. image:: image003.gif
-
-Thus
-
-where 0 =\< *A*  =\<1/4 in order for these values to be physically valid.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Specific_Surface_Area:
-
-Specific Surface Area
----------------------
-
-.. image:: image004.gif
-
-where *A*  and *Q**  are obtained from previous sections, and the Porod 
-constant *Cp*  is given by users.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Definitions:
-
-Definitions
------------
-
-Q: the magnitude of neutron (or X-ray) momentum transfer vector.
-
-I(Q): the scattering intensity as a function of the momentum transfer Q.
-
-Invariant total is the sum of the invariant calculated from datas q range and
-the invariant resulting from extrapolation at low q range and at high q range 
-if considered.
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _Reference:
-
-References
-----------
-
-Chapter 2 in O. Glatter and O. Kratky, "Small Angle X-Ray Scattering", Academic 
-Press, New York, 1982
-
-http://physchem.kfunigraz.ac.at/sm/
-
-.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
-
-.. _How_to_Use:
-
-How to Use
-----------
-
-1. Loading data to the panel: Open the data file from File in the menu bar. 
-Select loaded data from a plot panel by highlighting that it until its color 
-turns yellow. Then right click on that the data and selects the option Compute 
-Invariant. The application automatically computes the invariant value if the 
-data loaded is valid.
-
-2. To subtract a background or/and to rescale the data, type the values in 
-Customized Input box.
-
-3. If you want to calculate the volume fraction and the specific surface 
-area, type the optional inputs in the customized input box, and then press 
-'Compute' button.
-
-4. The invariant can also be calculated including the outside of the data Q 
-range:  To include the lower Q and/or the higher Q range, check in the enable 
-extrapolation check box in 'Extrapolation' box. If the power low is chosen,
-the power (exponent) can be either held or fitted by checking the 
-corresponding radio button.  The Npts that is being used for the extrapolation 
-can be specified.
-
-5. If the invariant calculated from the extrapolated region is too large, it 
-will be warn in red at the top of the panel, which means that your data is not 
-proper to calculate the invariant.
-
-6. The details of the calculation is available by clicking the 'Details'
-button in the middle of the panel.
-
-.. image:: image005.gif
Index: src/sas/perspectives/invariant/media/report_template.html
===================================================================
--- src/sas/perspectives/invariant/media/report_template.html	(revision 66e579f64f2e1562f96d396bf9302d2f6f2b84a8)
+++ src/sas/perspectives/invariant/media/report_template.html	(revision 794922220f2fb3b23dd08c648aabf87b4850596c)
Index: c/sas/perspectives/pr/media/pr_help.rst
===================================================================
--- src/sas/perspectives/pr/media/pr_help.rst	(revision ec392464eef959a5c2e87e6a72ed72fd7e947a07)
+++ 	(revision )
@@ -1,36 +1,0 @@
-.. pr_help.rst
-
-.. This is a port of the original SasView html help file to ReSTructured text
-.. by S King, ISIS, during SasView CodeCamp-III in Feb 2015.
-
-.. |pi| unicode:: U+03C0
-.. |chi| unicode:: U+03C7
-
-P(r) Inversion Perspective
-==========================
-
-The inversion approach is based on Moore, J. Appl. Cryst., (1980) 13, 168-175.
-
-P(r) is set to be equal to an expansion of base functions of the type
-phi_n(r) = 2 * r * sin(|pi| * n * r / D_max).
-
-The coefficient of each base function in the expansion is found by performing 
-a least square fit with the following fit function:
-
-|chi| ^2 = sum_i[ I_meas(q_i) - I_th(q_i) ]^2 / error^2 + Reg_term
-
-where I_meas(q) is the measured scattering intensity and I_th(q) is the 
-prediction from the Fourier transform of the P(r) expansion. 
-
-The Reg_term term is a regularization term set to the second derivative 
-d^2 P(r) / dr^2 integrated over r. It is used to produce a smooth P(r) output.
-
-The following are user inputs:
-
-*  Number of terms: the number of base functions in the P(r) expansion.
-   
-*  Regularization constant: a multiplicative constant to set the size of
-   the regularization term.
-
-*  Maximum distance: the maximum distance between any two points in the
-   system.
Index: st/pr_inversion/test/test_output.txt
===================================================================
--- test/pr_inversion/test/test_output.txt	(revision 400155bab01bdb35b3cf83069f57cf9f47005bca)
+++ 	(revision )
@@ -1,123 +1,0 @@
-#d_max=160
-#nfunc=10
-#alpha=0.0007
-#chi2=836.797
-#elapsed=0
-#qmin=None
-#qmax=None
-#slit_height=0
-#slit_width=0
-#background=0
-#has_bck=0
-#alpha_estimate=4.58991e-06
-#C_0=217.876478953+-2522.42314999
-#C_1=0.30164617344+-226.644556603
-#C_2=7.15694574584+-43.4919208221
-#C_3=-0.79690812244+-25.8031634616
-#C_4=0.948333847403+-11.3794625443
-#C_5=-0.751612279429+-8.64083336005
-#C_6=-0.0796650783501+-5.73820483268
-#C_7=-0.518109559543+-3.56660274557
-#C_8=-0.129910831984+-1.99841316045
-#C_9=-0.258134624641+-0.756509301101
-<r>  <Pr>  <dPr>
-0  0  0
-1.6  22.981  7.48836
-3.2  91.986  29.737
-4.8  207.187  66.1302
-6.4  368.819  115.749
-8  577.117  177.508
-9.6  832.224  250.315
-11.2  1134.11  333.205
-12.8  1482.46  425.442
-14.4  1876.63  526.549
-16  2315.57  636.272
-17.6  2797.81  754.499
-19.2  3321.46  881.145
-20.8  3884.25  1016.06
-22.4  4483.6  1158.97
-24  5116.72  1309.47
-25.6  5780.7  1467.05
-27.2  6472.66  1631.18
-28.8  7189.82  1801.33
-30.4  7929.59  1977.02
-32  8689.7  2157.88
-33.6  9468.17  2343.55
-35.2  10263.4  2533.72
-36.8  11073.9  2728.06
-38.4  11898.7  2926.2
-40  12737  3127.75
-41.6  13587.7  3332.27
-43.2  14450.2  3539.34
-44.8  15323.5  3748.54
-46.4  16206.5  3959.49
-48  17098  4171.83
-49.6  17996.3  4385.18
-51.2  18899.8  4599.19
-52.8  19806.5  4813.46
-54.4  20714.3  5027.56
-56  21620.8  5241.07
-57.6  22524  5453.53
-59.2  23421.6  5664.53
-60.8  24311.7  5873.68
-62.4  25192.3  6080.65
-64  26061.8  6285.13
-65.6  26918.7  6486.85
-67.2  27761.7  6685.53
-68.8  28589.6  6880.91
-70.4  29401.3  7072.73
-72  30195.6  7260.72
-73.6  30971.4  7444.63
-75.2  31727.2  7624.23
-76.8  32461.5  7799.3
-78.4  33172.7  7969.61
-80  33858.8  8134.91
-81.6  34517.8  8294.9
-83.2  35147.6  8449.24
-84.8  35745.9  8597.54
-86.4  36310.5  8739.34
-88  36839.5  8874.2
-89.6  37330.9  9001.64
-91.2  37783.1  9121.2
-92.8  38194.6  9232.39
-94.4  38564.3  9334.72
-96  38891.1  9427.68
-97.6  39174.1  9510.74
-99.2  39412.6  9583.35
-100.8  39605.8  9644.98
-102.4  39752.6  9695.14
-104  39851.9  9733.38
-105.6  39902.4  9759.36
-107.2  39902.5  9772.74
-108.8  39850.1  9773.24
-110.4  39743.2  9760.52
-112  39579.6  9734.22
-113.6  39356.7  9693.89
-115.2  39072.3  9639.07
-116.8  38724.1  9569.28
-118.4  38310.3  9484.1
-120  37829  9383.18
-121.6  37278.9  9266.24
-123.2  36659  9133
-124.8  35968.4  8983.13
-126.4  35206.6  8816.15
-128  34373  8631.45
-129.6  33466.9  8428.29
-131.2  32487.5  8205.96
-132.8  31433.4  7963.92
-134.4  30303.1  7701.95
-136  29094.1  7420.23
-137.6  27803.8  7119.29
-139.2  26428.9  6799.69
-140.8  24965.9  6461.63
-142.4  23411.1  6104.48
-144  21761.3  5726.35
-145.6  20013.4  5323.88
-147.2  18165.4  4892.46
-148.8  16216.4  4426.74
-150.4  14166.9  3921.46
-152  12019  3372.52
-153.6  9776.61  2777.82
-155.2  7445.34  2138.05
-156.8  5032.57  1456.94
-158.4  2547.22  741.175
Index: st/sasdataloader/test/isis_1_0_write_test.xml
===================================================================
--- test/sasdataloader/test/isis_1_0_write_test.xml	(revision 400155bab01bdb35b3cf83069f57cf9f47005bca)
+++ 	(revision )
@@ -1,865 +1,0 @@
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Index: st/sasdataloader/test/isis_1_1_write_test.xml
===================================================================
--- test/sasdataloader/test/isis_1_1_write_test.xml	(revision 400155bab01bdb35b3cf83069f57cf9f47005bca)
+++ 	(revision )
@@ -1,1557 +1,0 @@
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-        <T unit="none">0.0248015</T>
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-      <Tdata>
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-        <Lambda unit="A">3.74996e-68</Lambda>
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-        <Lambda unit="A">8.75213e-78</Lambda>
-        <T unit="none">4462.63</T>
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-      <Tdata>
-        <Lambda unit="A">-3.14338999988e-315</Lambda>
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-      <Tdata>
-        <Lambda unit="A">1.08255e-226</Lambda>
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-      <Tdata>
-        <Lambda unit="A">1.07499e+102</Lambda>
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-        <Tdev unit="none">2.56873</Tdev>
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-      <Tdata>
-        <Lambda unit="A">1.07499e+102</Lambda>
-        <T unit="none">5628.96</T>
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-      <Tdata>
-        <Lambda unit="A">1.07508e+102</Lambda>
-        <T unit="none">5724.73</T>
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-      <Tdata>
-        <Lambda unit="A">3.81253e-303</Lambda>
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-        <Lambda unit="A">1.35808e-312</Lambda>
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-      <Tdata>
-        <Lambda unit="A">1.07513e+102</Lambda>
-        <T unit="none">5767.32</T>
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-      <Tdata>
-        <Lambda unit="A">1.07513e+102</Lambda>
-        <T unit="none">5694.24</T>
-        <Tdev unit="none">3.26814</Tdev>
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-      <Tdata>
-        <Lambda unit="A">4.38310999756e-315</Lambda>
-        <T unit="none">5525.05</T>
-        <Tdev unit="none">3.38253</Tdev>
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-      <Tdata>
-        <Lambda unit="A">8.52703999979e-316</Lambda>
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-        <Tdev unit="none">3.50092</Tdev>
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-      <Tdata>
-        <Lambda unit="A">0.0</Lambda>
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-        <Tdev unit="none">3.62345</Tdev>
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-      <Tdata>
-        <Lambda unit="A">0.0</Lambda>
-        <T unit="none">5074.68</T>
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-      <Tdata>
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-        <T unit="none">4929.65</T>
-        <Tdev unit="none">3.88153</Tdev>
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-      <Tdata>
-        <Lambda unit="A">3.54616000203e-315</Lambda>
-        <T unit="none">4745.3</T>
-        <Tdev unit="none">4.01738</Tdev>
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-      <Tdata>
-        <Lambda unit="A">3.54616000203e-315</Lambda>
-        <T unit="none">4841.86</T>
-        <Tdev unit="none">4.15799</Tdev>
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-      <Tdata>
-        <Lambda unit="A">2.71357e+104</Lambda>
-        <T unit="none">4897.12</T>
-        <Tdev unit="none">4.30352</Tdev>
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-      <Tdata>
-        <Lambda unit="A">2.72432e+104</Lambda>
-        <T unit="none">4974.21</T>
-        <Tdev unit="none">4.45414</Tdev>
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-      <Tdata>
-        <Lambda unit="A">2.15015e+102</Lambda>
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-        <Tdev unit="none">4.61004</Tdev>
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-      <Tdata>
-        <Lambda unit="A">1.07508e+102</Lambda>
-        <T unit="none">4948.31</T>
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-      <Tdata>
-        <Lambda unit="A">3.53040999951e-315</Lambda>
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-      <Tdata>
-        <Lambda unit="A">0.0</Lambda>
-        <T unit="none">5008.83</T>
-        <Tdev unit="none">5.11123</Tdev>
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-      <Tdata>
-        <Lambda unit="A">0.0</Lambda>
-        <T unit="none">4940.5</T>
-        <Tdev unit="none">5.29012</Tdev>
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-      <Tdata>
-        <Lambda unit="A">2.00379e-270</Lambda>
-        <T unit="none">4859.81</T>
-        <Tdev unit="none">5.47528</Tdev>
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-      <Tdata>
-        <Lambda unit="A">2.00379e-270</Lambda>
-        <T unit="none">4602.81</T>
-        <Tdev unit="none">5.66691</Tdev>
-      </Tdata>
-      <Tdata>
-        <Lambda unit="A">4.58351e-312</Lambda>
-        <T unit="none">4362.55</T>
-        <Tdev unit="none">5.86525</Tdev>
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-      <Tdata>
-        <Lambda unit="A">1.7472e-287</Lambda>
-        <T unit="none">4081.97</T>
-        <Tdev unit="none">6.07054</Tdev>
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-      <Tdata>
-        <Lambda unit="A">1.74845e-287</Lambda>
-        <T unit="none">3771.18</T>
-        <Tdev unit="none">6.28301</Tdev>
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-      <Tdata>
-        <Lambda unit="A">1.24882e-290</Lambda>
-        <T unit="none">3732.39</T>
-        <Tdev unit="none">6.50291</Tdev>
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-      <Tdata>
-        <Lambda unit="A">0.0</Lambda>
-        <T unit="none">3291.09</T>
-        <Tdev unit="none">6.73051</Tdev>
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-      <Tdata>
-        <Lambda unit="A">0.0</Lambda>
-        <T unit="none">2837.17</T>
-        <Tdev unit="none">6.96608</Tdev>
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-      <Tdata>
-        <Lambda unit="A">0.0</Lambda>
-        <T unit="none">2529.37</T>
-        <Tdev unit="none">7.2099</Tdev>
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-      <Tdata>
-        <Lambda unit="A">0.0</Lambda>
-        <T unit="none">2226.82</T>
-        <Tdev unit="none">7.46224</Tdev>
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-      <Tdata>
-        <Lambda unit="A">1.07499e+102</Lambda>
-        <T unit="none">1960.88</T>
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-      <Tdata>
-        <Lambda unit="A">3.32977e-311</Lambda>
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-      <Tdata>
-        <Lambda unit="A">7.19961e-310</Lambda>
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-      <Tdata>
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-        <T unit="none">895.069</T>
-        <Tdev unit="none">9.173</Tdev>
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-      <Tdata>
-        <Lambda unit="A">7.42699000005e-314</Lambda>
-        <T unit="none">727.543</T>
-        <Tdev unit="none">9.49406</Tdev>
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-      <Tdata>
-        <Lambda unit="A">4.24398999993e-314</Lambda>
-        <T unit="none">598.171</T>
-        <Tdev unit="none">9.82867</Tdev>
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-      <Tdata>
-        <Lambda unit="A">3.16202013338e-322</Lambda>
-        <T unit="none">-8.61158000229e-315</T>
-        <Tdev unit="none">-3.78577e-270</Tdev>
-      </Tdata>
-      <Tdata>
-        <Lambda unit="A">0.0</Lambda>
-        <T unit="none">2.2385</T>
-        <Tdev unit="none">0.00307782</Tdev>
-      </Tdata>
-      <Tdata>
-        <Lambda unit="A">0.0</Lambda>
-        <T unit="none">2.31685</T>
-        <Tdev unit="none">0.00300224</Tdev>
-      </Tdata>
-      <Tdata>
-        <Lambda unit="A">3.53040999951e-315</Lambda>
-        <T unit="none">2.39794</T>
-        <Tdev unit="none">0.00292546</Tdev>
-      </Tdata>
-    </SAStransmission_spectrum>
-    <SASsample name="">
-      <ID>TK49 c10_SANS</ID>
-    </SASsample>
-    <SASinstrument>
-      <name>LOQ</name>
-      <SASsource>
-        <radiation>neutron</radiation>
-      </SASsource>
-      <SAScollimation/>
-      <SASdetector>
-        <name>HAB</name>
-        <SDD unit="mm">575.0</SDD>
-      </SASdetector>
-      <SASdetector>
-        <name>main-detector-bank</name>
-        <SDD unit="mm">4145.02</SDD>
-      </SASdetector>
-    </SASinstrument>
-    <SASprocess>
-      <name>Mantid generated CanSAS1D XML</name>
-      <date>02-Aug-2013 16:53:56</date>
-      <description></description>
-      <term name="svn">2.5.3</term>
-      <term name="user_file">K:/masks/MASKLOQ_MAN_132E_Lu_Banjo_12mm.txt</term>
-      <SASprocessnote></SASprocessnote>
-    </SASprocess>
-    <SASnote></SASnote>
-  </SASentry>
-</SASroot>
Index: test/sasdataloader/test/ring_testdata.txt
===================================================================
--- test/sasdataloader/test/ring_testdata.txt	(revision 400155bab01bdb35b3cf83069f57cf9f47005bca)
+++ test/sasdataloader/test/ring_testdata.txt	(revision 8c9ffde290eafed946f800881bf4901b48445d4c)
@@ -1,21 +1,21 @@
 <X>   <Y>   <dY>
-0.0 0.974491286452 0.0803843574327
-0.314159265359 0.9046853025 0.0768971192264
-0.628318530718 0.964040908176 0.0790933208542
-0.942477796077 0.922142905769 0.0781616076625
-1.25663706144 1.02710537736 0.080875897538
-1.57079632679 1.01448978075 0.0808313893873
-1.88495559215 1.04677136013 0.0828850195035
-2.19911485751 1.00067189877 0.0790510747578
-2.51327412287 1.06280533013 0.0830643956456
-2.82743338823 1.04313751703 0.0824585190353
-3.14159265359 0.993559460696 0.0803376331443
-3.45575191895 0.998101030127 0.0813124293449
-3.76991118431 1.04589910764 0.0821364674302
-4.08407044967 0.997201556522 0.0797466854806
-4.39822971503 1.07289797405 0.0830165798358
-4.71238898038 1.01212391625 0.0803021745794
-5.02654824574 0.995907123899 0.0804649435453
-5.3407075111 0.991431571613 0.0803765721376
-5.65486677646 0.959020086792 0.0787114622667
-5.96902604182 0.945705788519 0.0767669312314
+0.157079632679 0.892216637179 0.0775663414595
+0.471238898038 0.98455818481 0.079657697118
+0.785398163397 0.961797998125 0.0788556980394
+1.09955742876 0.97171642327 0.0791285423182
+1.41371669412 1.0146882474 0.082063426639
+1.72787595947 1.00992701463 0.080353091764
+2.04203522483 1.02880481582 0.0815342153253
+2.35619449019 1.00598046038 0.0798251732283
+2.67035375555 1.07871021115 0.0836335498662
+2.98451302091 0.998456910563 0.079747331585
+3.29867228627 1.04419570592 0.0830428241489
+3.61283155163 1.01232642025 0.0808308513267
+3.92699081699 1.0083937443 0.0810028887009
+4.24115008235 1.03216852956 0.0810389534812
+4.55530934771 1.06499475793 0.0814085230439
+4.86946861306 0.982265097403 0.0805528988046
+5.18362787842 1.00390126667 0.0806633561062
+5.49778714378 0.980815954717 0.0793145659499
+5.81194640914 0.907713166456 0.0765782956648
+6.1261056745 0.983188286879 0.0797444057771
Index: st/sasdataloader/test/write_test.xml
===================================================================
--- test/sasdataloader/test/write_test.xml	(revision 400155bab01bdb35b3cf83069f57cf9f47005bca)
+++ 	(revision )
@@ -1,114 +1,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<SASroot xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="cansas1d/1.0" version="1.0" xsi:schemaLocation="cansas1d/1.0 http://svn.smallangles.net/svn/canSAS/1dwg/trunk/cansas1d.xsd">
-  <SASentry>
-    <Title>Test title</Title>
-    <Run name="run name">1234</Run>
-    <SASdata>
-      <Idata>
-        <Q unit="1/A">0.02</Q>
-        <I unit="1/cm">1000.0</I>
-        <Idev unit="1/cm">3.0</Idev>
-        <Qdev unit="1/A">0.01</Qdev>
-      </Idata>
-      <Idata>
-        <Q unit="1/A">0.03</Q>
-        <I unit="1/cm">1001.0</I>
-        <Idev unit="1/cm">4.0</Idev>
-        <Qdev unit="1/A">0.02</Qdev>
-      </Idata>
-    </SASdata>
-    <SASsample name="my sample">
-      <ID>SI600-new-long</ID>
-      <thickness unit="mm">1.03</thickness>
-      <transmission>0.327</transmission>
-      <temperature unit="C">0.0</temperature>
-      <position>
-        <x unit="mm">10.0</x>
-        <y unit="mm">0.0</y>
-      </position>
-      <orientation>
-        <roll unit="degree">22.5</roll>
-        <pitch unit="degree">0.02</pitch>
-      </orientation>
-      <details>http://chemtools.chem.soton.ac.uk/projects/blog/blogs.php/bit_id/2720</details>
-      <details>Some text here</details>
-    </SASsample>
-    <SASinstrument>
-      <name>canSAS instrument</name>
-      <SASsource name="source name">
-        <radiation>neutron</radiation>
-        <beam_size name="bm">
-          <x unit="mm">12.0</x>
-          <y unit="mm">13.0</y>
-        </beam_size>
-        <beam_shape>disc</beam_shape>
-        <wavelength unit="A">6.0</wavelength>
-        <wavelength_min unit="nm">0.22</wavelength_min>
-        <wavelength_max unit="nm">1.0</wavelength_max>
-        <wavelength_spread unit="percent">14.3</wavelength_spread>
-      </SASsource>
-      <SAScollimation name="test coll name">
-        <length unit="mm">123.0</length>
-        <aperture name="source" type="radius">
-          <size>
-            <x unit="mm">50.0</x>
-          </size>
-          <distance unit="mm">11000.0</distance>
-        </aperture>
-        <aperture name="sample" type="radius">
-          <size>
-            <x unit="mm">1.0</x>
-          </size>
-        </aperture>
-      </SAScollimation>
-      <SASdetector>
-        <name>fictional hybrid</name>
-        <SDD unit="mm">4150.0</SDD>
-        <offset>
-          <x unit="m">0.001</x>
-          <y unit="m">0.002</y>
-        </offset>
-        <orientation>
-          <roll unit="degree">1.0</roll>
-          <pitch unit="degree">0.0</pitch>
-          <yaw unit="degree">0.0</yaw>
-        </orientation>
-        <beam_center>
-          <x unit="mm">322.64</x>
-          <y unit="mm">327.68</y>
-        </beam_center>
-        <pixel_size>
-          <x unit="mm">5.0</x>
-          <y unit="mm">5.0</y>
-        </pixel_size>
-      </SASdetector>
-    </SASinstrument>
-    <SASprocess>
-      <name>spol</name>
-      <date>04-Sep-2007 18:35:02</date>
-      <description></description>
-      <term name="radialstep" unit="mm">10.000</term>
-      <term name="sector_width" unit="degree">180.0</term>
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