1 | """ |
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2 | Unit tests for fitting module |
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3 | @author Gervaise Alina |
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4 | """ |
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5 | import unittest |
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6 | import math |
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7 | |
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8 | from sans.fit.AbstractFitEngine import Model |
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9 | from sans.dataloader.loader import Loader |
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10 | from sans.fit.Fitting import Fit |
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11 | from sans.models.LineModel import LineModel |
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12 | from sans.models.Constant import Constant |
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13 | |
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14 | class testFitModule(unittest.TestCase): |
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15 | """ test fitting """ |
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16 | |
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17 | def test1(self): |
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18 | """ Fit 1 data (testdata_line.txt)and 1 model(lineModel) """ |
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19 | #load data |
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20 | data = Loader().load("testdata_line.txt") |
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21 | data.name = data.filename |
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22 | #Importing the Fit module |
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23 | from bumps import fitters |
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24 | fitters.FIT_DEFAULT = 'dream' |
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25 | print fitters.FIT_OPTIONS['dream'].__dict__ |
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26 | fitter = Fit('bumps') |
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27 | # Receives the type of model for the fitting |
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28 | model1 = LineModel() |
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29 | model1.name = "M1" |
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30 | model = Model(model1,data) |
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31 | #fit with scipy test |
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32 | |
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33 | pars1= ['param1','param2'] |
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34 | fitter.set_data(data,1) |
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35 | try:fitter.set_model(model,1,pars1) |
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36 | except ValueError,exc: |
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37 | #print "ValueError was correctly raised: "+str(msg) |
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38 | assert str(exc).startswith('wrong parameter') |
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39 | else: raise AssertionError("No error raised for scipy fitting with wrong parameters name to fit") |
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40 | pars1= ['A','B'] |
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41 | fitter.set_model(model,1,pars1) |
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42 | fitter.select_problem_for_fit(id=1,value=1) |
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43 | result1, = fitter.fit() |
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44 | |
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45 | self.assertTrue( math.fabs(result1.pvec[0]-4)/3 <= result1.stderr[0] ) |
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46 | self.assertTrue( math.fabs(result1.pvec[1]-2.5)/3 <= result1.stderr[1]) |
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47 | self.assertTrue( result1.fitness/len(data.x) < 2 ) |
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48 | |
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49 | return |
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50 | #fit with park test |
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51 | fitter = Fit('park') |
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52 | fitter.set_data(data,1) |
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53 | fitter.set_model(model,1,pars1) |
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54 | fitter.select_problem_for_fit(id=1,value=1) |
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55 | result2, = fitter.fit() |
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56 | |
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57 | self.assert_(result2) |
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58 | self.assertTrue( math.fabs(result2.pvec[0]-4)/3 <= result2.stderr[0] ) |
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59 | self.assertTrue( math.fabs(result2.pvec[1]-2.5)/3 <= result2.stderr[1] ) |
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60 | self.assertTrue( result2.fitness/len(data.x) < 2) |
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61 | # compare fit result result for scipy and park |
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62 | self.assertAlmostEquals( result1.pvec[0], result2.pvec[0] ) |
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63 | self.assertAlmostEquals( result1.pvec[1],result2.pvec[1] ) |
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64 | self.assertAlmostEquals( result1.stderr[0],result2.stderr[0] ) |
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65 | self.assertAlmostEquals( result1.stderr[1],result2.stderr[1] ) |
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66 | self.assertAlmostEquals( result1.fitness, |
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67 | result2.fitness/len(data.x),1 ) |
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68 | |
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69 | |
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70 | def test2(self): |
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71 | """ fit 2 data and 2 model with no constrainst""" |
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72 | #load data |
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73 | l = Loader() |
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74 | data1=l.load("testdata_line.txt") |
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75 | data1.name = data1.filename |
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76 | |
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77 | data2=l.load("testdata_line1.txt") |
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78 | data2.name = data2.filename |
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79 | |
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80 | #Importing the Fit module |
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81 | fitter = Fit('scipy') |
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82 | # Receives the type of model for the fitting |
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83 | model11 = LineModel() |
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84 | model11.name= "M1" |
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85 | model22 = LineModel() |
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86 | model11.name= "M2" |
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87 | |
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88 | model1 = Model(model11,data1) |
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89 | model2 = Model(model22,data2) |
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90 | #fit with scipy test |
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91 | pars1= ['A','B'] |
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92 | fitter.set_data(data1,1) |
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93 | fitter.set_model(model1,1,pars1) |
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94 | fitter.select_problem_for_fit(id=1,value=0) |
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95 | fitter.set_data(data2,2) |
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96 | fitter.set_model(model2,2,pars1) |
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97 | fitter.select_problem_for_fit(id=2,value=0) |
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98 | |
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99 | try: result1, = fitter.fit() |
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100 | except RuntimeError,msg: |
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101 | assert str(msg)=="No Assembly scheduled for Scipy fitting." |
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102 | else: raise AssertionError,"No error raised for scipy fitting with no model" |
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103 | fitter.select_problem_for_fit(id=1,value=1) |
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104 | fitter.select_problem_for_fit(id=2,value=1) |
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105 | try: result1, = fitter.fit() |
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106 | except RuntimeError,msg: |
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107 | assert str(msg)=="Scipy can't fit more than a single fit problem at a time." |
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108 | else: raise AssertionError,"No error raised for scipy fitting with more than 2 models" |
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109 | |
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110 | return |
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111 | #fit with park test |
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112 | fitter = Fit('park') |
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113 | fitter.set_data(data1,1) |
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114 | fitter.set_model(model1,1,pars1) |
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115 | fitter.set_data(data2,2) |
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116 | fitter.set_model(model2,2,pars1) |
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117 | fitter.select_problem_for_fit(id=1,value=1) |
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118 | fitter.select_problem_for_fit(id=2,value=1) |
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119 | R1,R2 = fitter.fit() |
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120 | |
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121 | self.assertTrue( math.fabs(R1.pvec[0]-4)/3 <= R1.stderr[0] ) |
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122 | self.assertTrue( math.fabs(R1.pvec[1]-2.5)/3 <= R1.stderr[1] ) |
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123 | self.assertTrue( R1.fitness/(len(data1.x)+len(data2.x)) < 2) |
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124 | |
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125 | |
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126 | def test3(self): |
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127 | """ fit 2 data and 2 model with 1 constrainst""" |
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128 | return |
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129 | #load data |
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130 | l = Loader() |
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131 | data1= l.load("testdata_line.txt") |
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132 | data1.name = data1.filename |
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133 | data2= l.load("testdata_cst.txt") |
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134 | data2.name = data2.filename |
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135 | |
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136 | # Receives the type of model for the fitting |
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137 | model11 = LineModel() |
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138 | model11.name= "line" |
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139 | model11.setParam("A", 1.0) |
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140 | model11.setParam("B",1.0) |
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141 | |
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142 | model22 = Constant() |
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143 | model22.name= "cst" |
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144 | model22.setParam("value", 1.0) |
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145 | |
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146 | model1 = Model(model11,data1) |
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147 | model2 = Model(model22,data2) |
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148 | model1.set(A=4) |
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149 | model1.set(B=3) |
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150 | # Constraint the constant value to be equal to parameter B (the real value is 2.5) |
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151 | model2.set(value='line.B') |
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152 | #fit with scipy test |
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153 | pars1= ['A','B'] |
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154 | pars2= ['value'] |
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155 | |
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156 | #Importing the Fit module |
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157 | fitter = Fit('park') |
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158 | fitter.set_data(data1,1) |
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159 | fitter.set_model(model1,1,pars1) |
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160 | fitter.set_data(data2,2,smearer=None) |
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161 | fitter.set_model(model2,2,pars2) |
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162 | fitter.select_problem_for_fit(id=1,value=1) |
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163 | fitter.select_problem_for_fit(id=2,value=1) |
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164 | |
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165 | R1,R2 = fitter.fit() |
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166 | self.assertTrue( math.fabs(R1.pvec[0]-4.0)/3. <= R1.stderr[0]) |
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167 | self.assertTrue( math.fabs(R1.pvec[1]-2.5)/3. <= R1.stderr[1]) |
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168 | self.assertTrue( R1.fitness/(len(data1.x)+len(data2.x)) < 2) |
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169 | |
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170 | |
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171 | def test4(self): |
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172 | """ fit 2 data concatenates with limited range of x and one model """ |
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173 | #load data |
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174 | l = Loader() |
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175 | data1 = l.load("testdata_line.txt") |
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176 | data1.name = data1.filename |
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177 | data2 = l.load("testdata_line1.txt") |
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178 | data2.name = data2.filename |
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179 | |
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180 | # Receives the type of model for the fitting |
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181 | model1 = LineModel() |
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182 | model1.name= "M1" |
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183 | model1.setParam("A", 1.0) |
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184 | model1.setParam("B",1.0) |
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185 | model = Model(model1,data1) |
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186 | |
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187 | #fit with scipy test |
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188 | pars1= ['A','B'] |
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189 | #Importing the Fit module |
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190 | fitter = Fit('scipy') |
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191 | fitter.set_data(data1,1,qmin=0, qmax=7) |
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192 | fitter.set_model(model,1,pars1) |
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193 | fitter.set_data(data2,1,qmin=1,qmax=10) |
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194 | fitter.select_problem_for_fit(id=1,value=1) |
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195 | |
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196 | result1, = fitter.fit() |
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197 | #print(result1) |
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198 | self.assert_(result1) |
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199 | |
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200 | self.assertTrue( math.fabs(result1.pvec[0]-4)/3 <= result1.stderr[0] ) |
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201 | self.assertTrue( math.fabs(result1.pvec[1]-2.5)/3 <= result1.stderr[1]) |
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202 | self.assertTrue( result1.fitness/len(data1.x) < 2 ) |
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203 | |
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204 | return |
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205 | #fit with park test |
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206 | fitter = Fit('park') |
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207 | fitter.set_data(data1,1,qmin=0, qmax=7) |
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208 | fitter.set_model(model,1,pars1) |
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209 | fitter.set_data(data2,1,qmin=1,qmax=10) |
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210 | fitter.select_problem_for_fit(id=1,value=1) |
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211 | result2, = fitter.fit() |
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212 | |
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213 | self.assert_(result2) |
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214 | self.assertTrue( math.fabs(result2.pvec[0]-4)/3 <= result2.stderr[0] ) |
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215 | self.assertTrue( math.fabs(result2.pvec[1]-2.5)/3 <= result2.stderr[1] ) |
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216 | self.assertTrue( result2.fitness/len(data1.x) < 2) |
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217 | # compare fit result result for scipy and park |
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218 | self.assertAlmostEquals( result1.pvec[0], result2.pvec[0] ) |
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219 | self.assertAlmostEquals( result1.pvec[1],result2.pvec[1] ) |
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220 | self.assertAlmostEquals( result1.stderr[0],result2.stderr[0] ) |
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221 | self.assertAlmostEquals( result1.stderr[1],result2.stderr[1] ) |
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222 | self.assertTrue( result2.fitness/(len(data2.x)+len(data1.x)) < 2 ) |
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223 | |
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224 | |
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225 | if __name__ == "__main__": |
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226 | unittest.main() |
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227 | |
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