source:
sasview/src/sas/sasgui/perspectives/corfunc/media/corfunc_help.rst
@
490f790
Last change on this file since 490f790 was 490f790, checked in by smk78, 8 months ago  



File size: 10.9 KB 
Correlation Function Analysis
Description
This currently performs correlation function analysis on SAXS/SANS data, but in the the future is also planned to generate modelindependent volume fraction profiles from the SANS from adsorbed polymer/surfactant layers. The two types of analyses differ in the mathematical transform that is applied to the data (Fourier vs Hilbert). However, both functions are returned in real space.
A correlation function may be interpreted in terms of an imaginary rod moving through the structure of the material. Î(x) is the probability that a rod of length x has equal electron/neutron scattering length density at either end. Hence a frequently occurring spacing within a structure will manifest itself as a peak in Î(x). SasView will return both the onedimensional ( Î_{1}(x) ) and threedimensional ( Î_{3}(x) ) correlation functions, the difference being that the former is only averaged in the plane of the scattering vector.
A volume fraction profile Φ (z) describes how the density of polymer segments/surfactant molecules varies with distance, z, normal to an (assumed locally flat) interface. The form of Φ (z) can provide information about the arrangement of polymer/surfactant molecules at the interface. The width of the profile provides measures of the layer thickness, and the area under the profile is related to the amount of material that is adsorbed.
Both analyses are performed in 3 stages:
 Extrapolation of the scattering curve to q = 0 and toward q = ∞
 Smoothed merging of the two extrapolations into the original data
 Fourier / Hilbert Transform of the smoothed data to give the correlation function or volume fraction profile, respectively
 (Optional) Interpretation of Î_{1}(x) assuming the sample conforms to an ideal lamellar morphology
Extrapolation
To q = 0
The data are extrapolated to q = 0 by fitting a Guinier function to the data points in the lowq range.
The equation used is:
Where the parameter B is related to the effective radiusofgyration of a spherical object having the same smallangle scattering in this region.
Note that as q tends to zero this function tends to a limiting value and is therefore less appropriate for use in systems where the form factor does not do likewise. However, because of the transform, the correlation functions are most affected by the Guinier backextrapolation at large values of x where the impact on any extrapolated parameters will be least significant.
To q = ∞
The data are extrapolated towards q = ∞ by fitting a Porod model to the data points in the highq range and then computing the extrapolation to 100 times the maximum q value in the experimental dataset. This should be more than sufficient to ensure that on transformation any truncation artefacts introduced are at such small values of x that they can be safely ignored.
The equation used is:
Where Bg is the background, K is the Porod constant, and σ (which must be > 0) describes the width of the electron/neutron scattering length density profile at the interface between the crystalline and amorphous regions as shown below.
Smoothing
The extrapolated data set consists of the Guinier backextrapolation from q ~ 0 up to the lowest q value in the original data, then the original scattering data, and then the Porod tailfit beyond this. The joins between the original data and the Guinier/Porod extrapolations are smoothed using the algorithm below to try and avoid the formation of truncation ripples in the transformed data:
Functions f(x_{i}) and g(x_{i}) where x_{i} ∈ {x_{1}, x_{2}, ..., x_{n}} , are smoothed over the range [a, b] to produce y(x_{i}) , by the following equations:
where:
Transformation
Fourier
If "Fourier" is selected for the transform type, SasView will perform a discrete cosine transform on the extrapolated data in order to calculate the 1D correlation function as:
where Q^{*} is the Scattering (also called Porod) Invariant.
The following algorithm is applied:
The 3D correlation function is calculated as:
Note
It is always advisable to inspect Î_{1}(x) and Î_{3}(x) for artefacts arising from the extrapolation and transformation processes:
 do they tend to zero as x tends to ∞ ?
 do they smoothly curve onto the ordinate at x = 0? (if not check the value of σ is sensible)
 are there ripples at x values corresponding to (2 π over) the two q values at which the extrapolated and experimental data are merged?
 are there any artefacts at x values corresponding to 2 π / q_{max} in the experimental data?
 and lastly, do the significant features/peaks in the correlation functions actually correspond to anticpated spacings in the sample?!!!
Finally, the program calculates the interface distribution function (IDF) g_{1}(x) as the discrete cosine transform of:
The IDF is proportional to the second derivative of Î_{1}(x) and represents a superposition of thickness distributions from all the contributing lamellae.
Hilbert
If "Hilbert" is selected for the transform type, the analysis will perform a Hilbert transform on the extrapolated data in order to calculate the Volume Fraction Profile.
Note
The Hilbert transform functionality is not yet implemented in SasView.
Interpretation
Correlation Function
Once the correlation functions have been calculated SasView can be asked to try and interpret Î_{1}(x) in terms of an ideal lamellar morphology as shown below.
The structural parameters extracted are:
 Long Period = L_{p}
 Average Hard Block Thickness = L_{c}
 Average Core Thickness = D_{0}
 Average Interface Thickness = D_{tr}
 Polydispersity = Γ_{min} ⁄ Γ_{max}
 Local Crystallinity = L_{c} ⁄ L_{p}
Warning
If the sample does not possess lamellar morphology then "Compute Parameters" will return garbage!
Volume Fraction Profile
SasView does not provide any automatic interpretation of volume fraction profiles in the same way that it does for correlation functions. However, a number of structural parameters are obtainable by other means:
 Surface Coverage = θ
 Anchor Separation = D
 Bound Fraction = < p >
 Second Moment = σ
 Maximum Extent = δ_{h}
 Adsorbed Amount = Γ
The reader is directed to the references for information on these parameters.
References
Correlation Function
Strobl, G. R.; Schneider, M. J. Polym. Sci. (1980), 18, 13431359
Koberstein, J.; Stein R. J. Polym. Sci. Phys. Ed. (1983), 21, 21812200
BaltÃ¡ Calleja, F. J.; Vonk, C. G. Xray Scattering of Synthetic Poylmers, Elsevier. Amsterdam (1989), 247251
BaltÃ¡ Calleja, F. J.; Vonk, C. G. Xray Scattering of Synthetic Poylmers, Elsevier. Amsterdam (1989), 257261
BaltÃ¡ Calleja, F. J.; Vonk, C. G. Xray Scattering of Synthetic Poylmers, Elsevier. Amsterdam (1989), 260270
GÃ¶schel, U.; Urban, G. Polymer (1995), 36, 36333639
Stribeck, N. XRay Scattering of Soft Matter, Springer. Berlin (2007), 138161
:ref:`FDR` (PDF format)
Volume Fraction Profile
Washington, C.; King, S. M. J. Phys. Chem., (1996), 100, 76037609
Cosgrove, T.; King, S. M.; Griffiths, P. C. ColloidPolymer Interactions: From Fundamentals to Practice, Wiley. New York (1999), 193204
King, S. M.; Griffiths, P. C.; Cosgrove, T. Applications of Neutron Scattering to Soft Condensed Matter, Gordon & Breach. Amsterdam (2000), 77105
King, S.; Griffiths, P.; Hone, J.; Cosgrove, T. Macromol. Symp. (2002), 190, 3342
Usage
Upon sending data for correlation function analysis, it will be plotted (minus the background value), along with a red bar indicating the upper end of the lowQ range (used for Guinier backextrapolation), and 2 purple bars indicating the range to be used for Porod forwardextrapolation. These bars may be moved by grabbing and dragging, or by entering appropriate values in the Q range input boxes.
Once the Q ranges have been set, click the "Calculate Bg" button to determine the background level. Alternatively, enter your own value into the box. If the box turns yellow this indicates that background subtraction has created some negative intensities. This may still be fine provided the peak intensity is very much greater than the background level. The important point is that the extrapolated dataset must approach zero at highq.
Now click the "Extrapolate" button to extrapolate the data. The graph window will update to show the extrapolated data, and the values of the parameters used for the Guinier and Porod extrapolations will appear in the "Extrapolation Parameters" section of the SasView GUI.
Now select which type of transform you would like to perform, using the radio buttons:
 Fourier: to perform a Fourier Transform to calculate the correlation functions
 Hilbert: to perform a Hilbert Transform to calculate the volume fraction profile
and click the "Transform" button to perform the selected transform and plot the results.
If a Fourier Transform was performed, the "Compute Parameters" button can now be clicked to interpret the correlation function as described earlier. The parameters will appear in the "Output Parameters" section of the SasView GUI.
Note
This help document was last changed by Steve King, 28Sep2017