[fa81e94] | 1 | import sys |
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| 2 | import logging |
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| 3 | import pylab |
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| 4 | import numpy as np |
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| 5 | |
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| 6 | from PyQt5 import QtGui, QtCore, QtWidgets |
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| 7 | |
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| 8 | # sas-global |
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| 9 | import sas.qtgui.Utilities.GuiUtils as GuiUtils |
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| 10 | |
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| 11 | # pr inversion GUI elements |
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| 12 | from .InversionUtils import WIDGETS |
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| 13 | from .UI.TabbedInversionUI import Ui_PrInversion |
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| 14 | from .InversionLogic import InversionLogic |
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| 15 | |
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| 16 | # pr inversion calculation elements |
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| 17 | from sas.sascalc.pr.invertor import Invertor |
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| 18 | |
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| 19 | def is_float(value): |
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| 20 | """Converts text input values to floats. Empty strings throw ValueError""" |
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| 21 | try: |
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| 22 | return float(value) |
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| 23 | except ValueError: |
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| 24 | return 0.0 |
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| 25 | |
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[50bfab0] | 26 | NUMBER_OF_TERMS = 10 |
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| 27 | REGULARIZATION = 0.0001 |
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| 28 | BACKGROUND_INPUT = 0.0 |
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| 29 | MAX_DIST = 140.0 |
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[ba4e3ba] | 30 | DICT_KEYS = ["Calculator", "PrPlot", "DataPlot", "DMaxWindow", "NFuncEst"] |
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[47bf906] | 31 | |
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[fa81e94] | 32 | |
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[304e42f] | 33 | # TODO: Explore window not working |
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[fa81e94] | 34 | # TODO: Update help with batch capabilities |
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| 35 | # TODO: Method to export results in some meaningful way |
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[d4881f6a] | 36 | class InversionWindow(QtWidgets.QDialog, Ui_PrInversion): |
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[fa81e94] | 37 | """ |
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| 38 | The main window for the P(r) Inversion perspective. |
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| 39 | """ |
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| 40 | |
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| 41 | name = "Inversion" |
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[f1ec901] | 42 | estimateSignal = QtCore.pyqtSignal(tuple) |
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| 43 | estimateNTSignal = QtCore.pyqtSignal(tuple) |
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| 44 | calculateSignal = QtCore.pyqtSignal(tuple) |
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[fa81e94] | 45 | |
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| 46 | def __init__(self, parent=None, data=None): |
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| 47 | super(InversionWindow, self).__init__() |
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| 48 | self.setupUi(self) |
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| 49 | |
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| 50 | self.setWindowTitle("P(r) Inversion Perspective") |
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| 51 | |
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| 52 | self._manager = parent |
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| 53 | self.communicate = GuiUtils.Communicate() |
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| 54 | |
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| 55 | self.logic = InversionLogic() |
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| 56 | |
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| 57 | # The window should not close |
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| 58 | self._allow_close = False |
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| 59 | |
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[47bf906] | 60 | # Visible data set items |
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[fa81e94] | 61 | # current QStandardItem showing on the panel |
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| 62 | self._data = None |
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| 63 | # current Data1D as referenced by self._data |
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| 64 | self._data_set = None |
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[47bf906] | 65 | # Reference to Dmax window for self._data |
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| 66 | self.dmaxWindow = None |
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| 67 | # p(r) calculator for self._data |
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[fa81e94] | 68 | self._calculator = Invertor() |
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[304e42f] | 69 | # Default to background estimate |
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| 70 | self._calculator.set_est_bck(True) |
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[47bf906] | 71 | # plots of self._data |
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| 72 | self.pr_plot = None |
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| 73 | self.data_plot = None |
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[e51e078] | 74 | # suggested nTerms |
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| 75 | self.nTermsSuggested = NUMBER_OF_TERMS |
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[47bf906] | 76 | |
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| 77 | # Calculation threads used by all data items |
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[fa81e94] | 78 | self.calc_thread = None |
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| 79 | self.estimation_thread = None |
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| 80 | |
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[47bf906] | 81 | # Mapping for all data items |
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| 82 | # list mapping data to all parameters |
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[fa81e94] | 83 | self._data_list = {} |
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| 84 | if not isinstance(data, list): |
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| 85 | data_list = [data] |
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| 86 | if data is not None: |
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| 87 | for datum in data_list: |
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[e51e078] | 88 | self.updateDataList(datum) |
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[f1ec901] | 89 | |
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[e51e078] | 90 | self.enableButtons() |
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[8f83719f] | 91 | |
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[fa81e94] | 92 | self.model = QtGui.QStandardItemModel(self) |
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| 93 | self.mapper = QtWidgets.QDataWidgetMapper(self) |
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[8f83719f] | 94 | |
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| 95 | # Add validators |
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| 96 | self.setupValidators() |
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[fa81e94] | 97 | # Link user interactions with methods |
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| 98 | self.setupLinks() |
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| 99 | # Set values |
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| 100 | self.setupModel() |
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| 101 | # Set up the Widget Map |
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| 102 | self.setupMapper() |
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| 103 | # Set base window state |
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| 104 | self.setupWindow() |
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| 105 | |
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| 106 | ###################################################################### |
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| 107 | # Base Perspective Class Definitions |
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| 108 | |
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| 109 | def communicator(self): |
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| 110 | return self.communicate |
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| 111 | |
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| 112 | def allowBatch(self): |
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| 113 | return True |
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| 114 | |
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| 115 | def setClosable(self, value=True): |
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| 116 | """ |
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| 117 | Allow outsiders close this widget |
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| 118 | """ |
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| 119 | assert isinstance(value, bool) |
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| 120 | self._allow_close = value |
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| 121 | |
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| 122 | def closeEvent(self, event): |
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| 123 | """ |
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| 124 | Overwrite QDialog close method to allow for custom widget close |
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| 125 | """ |
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| 126 | if self._allow_close: |
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| 127 | # reset the closability flag |
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| 128 | self.setClosable(value=False) |
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[d4881f6a] | 129 | # Tell the MdiArea to close the container |
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| 130 | self.parentWidget().close() |
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[fa81e94] | 131 | event.accept() |
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| 132 | else: |
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| 133 | event.ignore() |
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| 134 | # Maybe we should just minimize |
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| 135 | self.setWindowState(QtCore.Qt.WindowMinimized) |
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| 136 | |
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| 137 | ###################################################################### |
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| 138 | # Initialization routines |
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| 139 | |
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| 140 | def setupLinks(self): |
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| 141 | """Connect the use controls to their appropriate methods""" |
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| 142 | self.dataList.currentIndexChanged.connect(self.displayChange) |
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[f1ec901] | 143 | self.calculateAllButton.clicked.connect(self.startThreadAll) |
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| 144 | self.calculateThisButton.clicked.connect(self.startThread) |
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[fa81e94] | 145 | self.removeButton.clicked.connect(self.removeData) |
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| 146 | self.helpButton.clicked.connect(self.help) |
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| 147 | self.estimateBgd.toggled.connect(self.toggleBgd) |
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| 148 | self.manualBgd.toggled.connect(self.toggleBgd) |
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| 149 | self.regConstantSuggestionButton.clicked.connect(self.acceptAlpha) |
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| 150 | self.noOfTermsSuggestionButton.clicked.connect(self.acceptNoTerms) |
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| 151 | self.explorerButton.clicked.connect(self.openExplorerWindow) |
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[f1ec901] | 152 | |
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| 153 | self.backgroundInput.editingFinished.connect( |
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[441a03f] | 154 | lambda: self.set_background(is_float(self.backgroundInput.text()))) |
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[f1ec901] | 155 | self.minQInput.editingFinished.connect( |
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[8f83719f] | 156 | lambda: self._calculator.set_qmin(is_float(self.minQInput.text()))) |
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[f1ec901] | 157 | self.regularizationConstantInput.editingFinished.connect( |
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[8f83719f] | 158 | lambda: self._calculator.set_alpha(is_float(self.regularizationConstantInput.text()))) |
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[f1ec901] | 159 | self.maxDistanceInput.editingFinished.connect( |
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[8f83719f] | 160 | lambda: self._calculator.set_dmax(is_float(self.maxDistanceInput.text()))) |
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[f1ec901] | 161 | self.maxQInput.editingFinished.connect( |
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[8f83719f] | 162 | lambda: self._calculator.set_qmax(is_float(self.maxQInput.text()))) |
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[f1ec901] | 163 | self.slitHeightInput.editingFinished.connect( |
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[8f83719f] | 164 | lambda: self._calculator.set_slit_height(is_float(self.slitHeightInput.text()))) |
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[f1ec901] | 165 | self.slitWidthInput.editingFinished.connect( |
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[8f83719f] | 166 | lambda: self._calculator.set_slit_width(is_float(self.slitHeightInput.text()))) |
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[f1ec901] | 167 | |
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[fa81e94] | 168 | self.model.itemChanged.connect(self.model_changed) |
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[f1ec901] | 169 | self.estimateNTSignal.connect(self._estimateNTUpdate) |
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| 170 | self.estimateSignal.connect(self._estimateUpdate) |
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| 171 | self.calculateSignal.connect(self._calculateUpdate) |
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[fa81e94] | 172 | |
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| 173 | def setupMapper(self): |
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| 174 | # Set up the mapper. |
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| 175 | self.mapper.setOrientation(QtCore.Qt.Vertical) |
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| 176 | self.mapper.setModel(self.model) |
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| 177 | |
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| 178 | # Filename |
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| 179 | self.mapper.addMapping(self.dataList, WIDGETS.W_FILENAME) |
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| 180 | # Background |
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| 181 | self.mapper.addMapping(self.backgroundInput, WIDGETS.W_BACKGROUND_INPUT) |
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| 182 | self.mapper.addMapping(self.estimateBgd, WIDGETS.W_ESTIMATE) |
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| 183 | self.mapper.addMapping(self.manualBgd, WIDGETS.W_MANUAL_INPUT) |
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| 184 | |
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| 185 | # Qmin/Qmax |
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| 186 | self.mapper.addMapping(self.minQInput, WIDGETS.W_QMIN) |
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| 187 | self.mapper.addMapping(self.maxQInput, WIDGETS.W_QMAX) |
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| 188 | |
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| 189 | # Slit Parameter items |
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| 190 | self.mapper.addMapping(self.slitWidthInput, WIDGETS.W_SLIT_WIDTH) |
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| 191 | self.mapper.addMapping(self.slitHeightInput, WIDGETS.W_SLIT_HEIGHT) |
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| 192 | |
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| 193 | # Parameter Items |
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[8f83719f] | 194 | self.mapper.addMapping(self.regularizationConstantInput, WIDGETS.W_REGULARIZATION) |
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| 195 | self.mapper.addMapping(self.regConstantSuggestionButton, WIDGETS.W_REGULARIZATION_SUGGEST) |
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[fa81e94] | 196 | self.mapper.addMapping(self.explorerButton, WIDGETS.W_EXPLORE) |
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| 197 | self.mapper.addMapping(self.maxDistanceInput, WIDGETS.W_MAX_DIST) |
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| 198 | self.mapper.addMapping(self.noOfTermsInput, WIDGETS.W_NO_TERMS) |
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[8f83719f] | 199 | self.mapper.addMapping(self.noOfTermsSuggestionButton, WIDGETS.W_NO_TERMS_SUGGEST) |
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[fa81e94] | 200 | |
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| 201 | # Output |
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| 202 | self.mapper.addMapping(self.rgValue, WIDGETS.W_RG) |
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| 203 | self.mapper.addMapping(self.iQ0Value, WIDGETS.W_I_ZERO) |
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| 204 | self.mapper.addMapping(self.backgroundValue, WIDGETS.W_BACKGROUND_OUTPUT) |
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| 205 | self.mapper.addMapping(self.computationTimeValue, WIDGETS.W_COMP_TIME) |
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| 206 | self.mapper.addMapping(self.chiDofValue, WIDGETS.W_CHI_SQUARED) |
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| 207 | self.mapper.addMapping(self.oscillationValue, WIDGETS.W_OSCILLATION) |
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| 208 | self.mapper.addMapping(self.posFractionValue, WIDGETS.W_POS_FRACTION) |
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[8f83719f] | 209 | self.mapper.addMapping(self.sigmaPosFractionValue, WIDGETS.W_SIGMA_POS_FRACTION) |
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[fa81e94] | 210 | |
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| 211 | # Main Buttons |
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| 212 | self.mapper.addMapping(self.removeButton, WIDGETS.W_REMOVE) |
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[f1ec901] | 213 | self.mapper.addMapping(self.calculateAllButton, WIDGETS.W_CALCULATE_ALL) |
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[8f83719f] | 214 | self.mapper.addMapping(self.calculateThisButton, WIDGETS.W_CALCULATE_VISIBLE) |
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[fa81e94] | 215 | self.mapper.addMapping(self.helpButton, WIDGETS.W_HELP) |
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| 216 | |
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| 217 | self.mapper.toFirst() |
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| 218 | |
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| 219 | def setupModel(self): |
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| 220 | """ |
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| 221 | Update boxes with initial values |
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| 222 | """ |
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[50bfab0] | 223 | item = QtGui.QStandardItem(str(BACKGROUND_INPUT)) |
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[fa81e94] | 224 | self.model.setItem(WIDGETS.W_BACKGROUND_INPUT, item) |
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| 225 | item = QtGui.QStandardItem("") |
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| 226 | self.model.setItem(WIDGETS.W_QMIN, item) |
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| 227 | item = QtGui.QStandardItem("") |
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| 228 | self.model.setItem(WIDGETS.W_QMAX, item) |
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| 229 | item = QtGui.QStandardItem("") |
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| 230 | self.model.setItem(WIDGETS.W_SLIT_WIDTH, item) |
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| 231 | item = QtGui.QStandardItem("") |
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| 232 | self.model.setItem(WIDGETS.W_SLIT_HEIGHT, item) |
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[50bfab0] | 233 | item = QtGui.QStandardItem(str(NUMBER_OF_TERMS)) |
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[fa81e94] | 234 | self.model.setItem(WIDGETS.W_NO_TERMS, item) |
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[50bfab0] | 235 | item = QtGui.QStandardItem(str(REGULARIZATION)) |
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[fa81e94] | 236 | self.model.setItem(WIDGETS.W_REGULARIZATION, item) |
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[50bfab0] | 237 | item = QtGui.QStandardItem(str(MAX_DIST)) |
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[fa81e94] | 238 | self.model.setItem(WIDGETS.W_MAX_DIST, item) |
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| 239 | item = QtGui.QStandardItem("") |
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| 240 | self.model.setItem(WIDGETS.W_RG, item) |
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| 241 | item = QtGui.QStandardItem("") |
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| 242 | self.model.setItem(WIDGETS.W_I_ZERO, item) |
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| 243 | item = QtGui.QStandardItem("") |
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| 244 | self.model.setItem(WIDGETS.W_BACKGROUND_OUTPUT, item) |
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| 245 | item = QtGui.QStandardItem("") |
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| 246 | self.model.setItem(WIDGETS.W_COMP_TIME, item) |
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| 247 | item = QtGui.QStandardItem("") |
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| 248 | self.model.setItem(WIDGETS.W_CHI_SQUARED, item) |
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| 249 | item = QtGui.QStandardItem("") |
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| 250 | self.model.setItem(WIDGETS.W_OSCILLATION, item) |
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| 251 | item = QtGui.QStandardItem("") |
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| 252 | self.model.setItem(WIDGETS.W_POS_FRACTION, item) |
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| 253 | item = QtGui.QStandardItem("") |
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| 254 | self.model.setItem(WIDGETS.W_SIGMA_POS_FRACTION, item) |
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| 255 | |
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| 256 | def setupWindow(self): |
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| 257 | """Initialize base window state on init""" |
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| 258 | self.enableButtons() |
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| 259 | self.estimateBgd.setChecked(True) |
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| 260 | |
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[8f83719f] | 261 | def setupValidators(self): |
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| 262 | """Apply validators to editable line edits""" |
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| 263 | self.noOfTermsInput.setValidator(QtGui.QIntValidator()) |
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| 264 | self.regularizationConstantInput.setValidator(GuiUtils.DoubleValidator()) |
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| 265 | self.maxDistanceInput.setValidator(GuiUtils.DoubleValidator()) |
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| 266 | self.minQInput.setValidator(GuiUtils.DoubleValidator()) |
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| 267 | self.maxQInput.setValidator(GuiUtils.DoubleValidator()) |
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| 268 | self.slitHeightInput.setValidator(GuiUtils.DoubleValidator()) |
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| 269 | self.slitWidthInput.setValidator(GuiUtils.DoubleValidator()) |
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| 270 | |
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[fa81e94] | 271 | ###################################################################### |
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| 272 | # Methods for updating GUI |
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| 273 | |
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| 274 | def enableButtons(self): |
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| 275 | """ |
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| 276 | Enable buttons when data is present, else disable them |
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| 277 | """ |
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[8f83719f] | 278 | self.calculateAllButton.setEnabled(self.logic.data_is_loaded) |
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| 279 | self.calculateThisButton.setEnabled(self.logic.data_is_loaded) |
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[fa81e94] | 280 | self.removeButton.setEnabled(self.logic.data_is_loaded) |
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| 281 | self.explorerButton.setEnabled(self.logic.data_is_loaded) |
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[b685c7b] | 282 | self.regConstantSuggestionButton.setEnabled( |
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| 283 | self._calculator.suggested_alpha != self._calculator.alpha) |
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| 284 | self.noOfTermsSuggestionButton.setEnabled( |
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| 285 | self._calculator.nfunc != self.nTermsSuggested) |
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[fa81e94] | 286 | |
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| 287 | def populateDataComboBox(self, filename, data_ref): |
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| 288 | """ |
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| 289 | Append a new file name to the data combobox |
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| 290 | :param filename: data filename |
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| 291 | :param data_ref: QStandardItem reference for data set to be added |
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| 292 | """ |
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[6a3e1fe] | 293 | self.dataList.addItem(filename, data_ref) |
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[fa81e94] | 294 | |
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| 295 | def acceptNoTerms(self): |
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| 296 | """Send estimated no of terms to input""" |
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| 297 | self.model.setItem(WIDGETS.W_NO_TERMS, QtGui.QStandardItem( |
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| 298 | self.noOfTermsSuggestionButton.text())) |
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| 299 | |
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| 300 | def acceptAlpha(self): |
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| 301 | """Send estimated alpha to input""" |
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| 302 | self.model.setItem(WIDGETS.W_REGULARIZATION, QtGui.QStandardItem( |
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| 303 | self.regConstantSuggestionButton.text())) |
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| 304 | |
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| 305 | def displayChange(self): |
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[47bf906] | 306 | """Switch to another item in the data list""" |
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[f1ec901] | 307 | ref_item = self.dataList.itemData(self.dataList.currentIndex()) |
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[e51e078] | 308 | self.updateDataList(ref_item) |
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[f1ec901] | 309 | self.setCurrentData(ref_item) |
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[fa81e94] | 310 | |
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| 311 | ###################################################################### |
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| 312 | # GUI Interaction Events |
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| 313 | |
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| 314 | def update_calculator(self): |
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| 315 | """Update all p(r) params""" |
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| 316 | self._calculator.set_x(self._data_set.x) |
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| 317 | self._calculator.set_y(self._data_set.y) |
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| 318 | self._calculator.set_err(self._data_set.dy) |
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[441a03f] | 319 | self.set_background(self.backgroundInput.text()) |
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| 320 | |
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| 321 | def set_background(self, value): |
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| 322 | self._calculator.background = is_float(value) |
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[fa81e94] | 323 | |
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| 324 | def model_changed(self): |
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| 325 | """Update the values when user makes changes""" |
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| 326 | if not self.mapper: |
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| 327 | msg = "Unable to update P{r}. The connection between the main GUI " |
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| 328 | msg += "and P(r) was severed. Attempting to restart P(r)." |
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| 329 | logging.warning(msg) |
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| 330 | self.setClosable(True) |
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| 331 | self.close() |
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| 332 | InversionWindow.__init__(self.parent(), list(self._data_list.keys())) |
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| 333 | exit(0) |
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| 334 | if self.pr_plot is not None: |
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| 335 | title = self.pr_plot.name |
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[6a3e1fe] | 336 | GuiUtils.updateModelItemWithPlot(self._data, self.pr_plot, title) |
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[fa81e94] | 337 | if self.data_plot is not None: |
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| 338 | title = self.data_plot.name |
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[6a3e1fe] | 339 | GuiUtils.updateModelItemWithPlot(self._data, self.data_plot, title) |
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[8f83719f] | 340 | if self.dmaxWindow is not None: |
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[47bf906] | 341 | self.dmaxWindow.pr_state = self._calculator |
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| 342 | self.dmaxWindow.nfunc = self.getNFunc() |
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| 343 | self.dmaxWindow.modelChanged() |
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[fa81e94] | 344 | self.mapper.toFirst() |
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| 345 | |
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| 346 | def help(self): |
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| 347 | """ |
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| 348 | Open the P(r) Inversion help browser |
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| 349 | """ |
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[e90988c] | 350 | tree_location = "/user/sasgui/perspectives/pr/pr_help.html" |
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[fa81e94] | 351 | |
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| 352 | # Actual file anchor will depend on the combo box index |
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| 353 | # Note that we can be clusmy here, since bad current_fitter_id |
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| 354 | # will just make the page displayed from the top |
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[e90988c] | 355 | self._manager.showHelp(tree_location) |
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[fa81e94] | 356 | |
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| 357 | def toggleBgd(self): |
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| 358 | """ |
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| 359 | Toggle the background between manual and estimated |
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| 360 | """ |
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| 361 | sender = self.sender() |
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| 362 | if sender is self.estimateBgd: |
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| 363 | self.backgroundInput.setEnabled(False) |
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[304e42f] | 364 | self._calculator.set_est_bck = True |
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[441a03f] | 365 | elif sender is self.manualBgd: |
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[fa81e94] | 366 | self.backgroundInput.setEnabled(True) |
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[304e42f] | 367 | self._calculator.set_est_bck = False |
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[441a03f] | 368 | else: |
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| 369 | pass |
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[fa81e94] | 370 | |
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| 371 | def openExplorerWindow(self): |
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| 372 | """ |
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| 373 | Open the Explorer window to see correlations between params and results |
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| 374 | """ |
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| 375 | from .DMaxExplorerWidget import DmaxWindow |
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| 376 | self.dmaxWindow = DmaxWindow(self._calculator, self.getNFunc(), self) |
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| 377 | self.dmaxWindow.show() |
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| 378 | |
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| 379 | ###################################################################### |
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| 380 | # Response Actions |
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| 381 | |
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| 382 | def setData(self, data_item=None, is_batch=False): |
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| 383 | """ |
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| 384 | Assign new data set(s) to the P(r) perspective |
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| 385 | Obtain a QStandardItem object and parse it to get Data1D/2D |
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| 386 | Pass it over to the calculator |
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| 387 | """ |
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| 388 | assert data_item is not None |
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| 389 | |
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| 390 | if not isinstance(data_item, list): |
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| 391 | msg = "Incorrect type passed to the P(r) Perspective" |
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[47bf906] | 392 | raise AttributeError(msg) |
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[fa81e94] | 393 | |
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| 394 | for data in data_item: |
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[8f83719f] | 395 | if data in self._data_list.keys(): |
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| 396 | # Don't add data if it's already in |
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| 397 | return |
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[fa81e94] | 398 | # Create initial internal mappings |
---|
| 399 | self._data_set = GuiUtils.dataFromItem(data) |
---|
[47bf906] | 400 | self.logic = InversionLogic(self._data_set) |
---|
[6a3e1fe] | 401 | self.populateDataComboBox(self._data_set.filename, data) |
---|
[e51e078] | 402 | # Estimate q range |
---|
| 403 | qmin, qmax = self.logic.computeDataRange() |
---|
| 404 | self._calculator.set_qmin(qmin) |
---|
| 405 | self._calculator.set_qmax(qmax) |
---|
| 406 | self.updateDataList(data) |
---|
[fa81e94] | 407 | self.setCurrentData(data) |
---|
| 408 | # Estimate initial values from data |
---|
| 409 | self.performEstimate() |
---|
[304e42f] | 410 | self.updateGuiValues() |
---|
[fa81e94] | 411 | |
---|
[47bf906] | 412 | def updateDataList(self, dataRef): |
---|
| 413 | """Save the current data state of the window into self._data_list""" |
---|
[e51e078] | 414 | if dataRef is None: |
---|
| 415 | return |
---|
[47bf906] | 416 | self._data_list[dataRef] = { |
---|
[e51e078] | 417 | DICT_KEYS[0]: self._calculator, |
---|
| 418 | DICT_KEYS[1]: self.pr_plot, |
---|
| 419 | DICT_KEYS[2]: self.data_plot, |
---|
| 420 | DICT_KEYS[3]: self.dmaxWindow, |
---|
[ba4e3ba] | 421 | DICT_KEYS[4]: self.nTermsSuggested |
---|
[47bf906] | 422 | } |
---|
| 423 | |
---|
[fa81e94] | 424 | def getNFunc(self): |
---|
| 425 | """Get the n_func value from the GUI object""" |
---|
[50bfab0] | 426 | try: |
---|
| 427 | nfunc = int(self.noOfTermsInput.text()) |
---|
| 428 | except ValueError: |
---|
| 429 | logging.error("Incorrect number of terms specified: %s" %self.noOfTermsInput.text()) |
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| 430 | self.noOfTermsInput.setText(str(NUMBER_OF_TERMS)) |
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| 431 | nfunc = NUMBER_OF_TERMS |
---|
| 432 | return nfunc |
---|
[fa81e94] | 433 | |
---|
| 434 | def setCurrentData(self, data_ref): |
---|
[47bf906] | 435 | """Get the data by reference and display as necessary""" |
---|
[304e42f] | 436 | if data_ref is None: |
---|
| 437 | return |
---|
[fa81e94] | 438 | if not isinstance(data_ref, QtGui.QStandardItem): |
---|
| 439 | msg = "Incorrect type passed to the P(r) Perspective" |
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[e51e078] | 440 | raise AttributeError(msg) |
---|
[fa81e94] | 441 | # Data references |
---|
| 442 | self._data = data_ref |
---|
| 443 | self._data_set = GuiUtils.dataFromItem(data_ref) |
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[47bf906] | 444 | self._calculator = self._data_list[data_ref].get(DICT_KEYS[0]) |
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| 445 | self.pr_plot = self._data_list[data_ref].get(DICT_KEYS[1]) |
---|
| 446 | self.data_plot = self._data_list[data_ref].get(DICT_KEYS[2]) |
---|
| 447 | self.dmaxWindow = self._data_list[data_ref].get(DICT_KEYS[3]) |
---|
[ba4e3ba] | 448 | self.nTermsSuggested = self._data_list[data_ref].get(DICT_KEYS[4]) |
---|
| 449 | self.logic.set_data = self._data_set |
---|
[e51e078] | 450 | self.updateGuiValues() |
---|
| 451 | |
---|
| 452 | def updateGuiValues(self): |
---|
| 453 | pr = self._calculator |
---|
| 454 | out = self._calculator.out |
---|
| 455 | cov = self._calculator.cov |
---|
| 456 | elapsed = self._calculator.elapsed |
---|
| 457 | alpha = self._calculator.suggested_alpha |
---|
| 458 | nterms = self._calculator.nfunc |
---|
| 459 | self.model.setItem(WIDGETS.W_QMIN, |
---|
| 460 | QtGui.QStandardItem("{:.4g}".format(pr.get_qmin()))) |
---|
| 461 | self.model.setItem(WIDGETS.W_QMAX, |
---|
| 462 | QtGui.QStandardItem("{:.4g}".format(pr.get_qmax()))) |
---|
| 463 | self.model.setItem(WIDGETS.W_BACKGROUND_INPUT, |
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[304e42f] | 464 | QtGui.QStandardItem("{:.3f}".format(pr.background))) |
---|
[e51e078] | 465 | self.model.setItem(WIDGETS.W_BACKGROUND_OUTPUT, |
---|
| 466 | QtGui.QStandardItem("{:.3g}".format(pr.background))) |
---|
| 467 | self.model.setItem(WIDGETS.W_COMP_TIME, |
---|
| 468 | QtGui.QStandardItem("{:.4g}".format(elapsed))) |
---|
[b685c7b] | 469 | self.regConstantSuggestionButton.setText("{:-3.2g}".format(alpha)) |
---|
| 470 | self.noOfTermsSuggestionButton.setText( |
---|
| 471 | "{:n}".format(self.nTermsSuggested)) |
---|
[e51e078] | 472 | self.model.setItem(WIDGETS.W_COMP_TIME, |
---|
| 473 | QtGui.QStandardItem("{:.2g}".format(elapsed))) |
---|
| 474 | |
---|
[304e42f] | 475 | if isinstance(pr.chi2, np.ndarray): |
---|
[e51e078] | 476 | self.model.setItem(WIDGETS.W_CHI_SQUARED, |
---|
| 477 | QtGui.QStandardItem("{:.3g}".format(pr.chi2[0]))) |
---|
| 478 | if out is not None: |
---|
| 479 | self.model.setItem(WIDGETS.W_RG, |
---|
| 480 | QtGui.QStandardItem("{:.3g}".format(pr.rg(out)))) |
---|
| 481 | self.model.setItem(WIDGETS.W_I_ZERO, |
---|
| 482 | QtGui.QStandardItem( |
---|
| 483 | "{:.3g}".format(pr.iq0(out)))) |
---|
| 484 | self.model.setItem(WIDGETS.W_OSCILLATION, QtGui.QStandardItem( |
---|
| 485 | "{:.3g}".format(pr.oscillations(out)))) |
---|
| 486 | self.model.setItem(WIDGETS.W_POS_FRACTION, QtGui.QStandardItem( |
---|
| 487 | "{:.3g}".format(pr.get_positive(out)))) |
---|
| 488 | if cov is not None: |
---|
| 489 | self.model.setItem(WIDGETS.W_SIGMA_POS_FRACTION, |
---|
| 490 | QtGui.QStandardItem( |
---|
| 491 | "{:.3g}".format( |
---|
| 492 | pr.get_pos_err(out, cov)))) |
---|
[b685c7b] | 493 | self.enableButtons() |
---|
[47bf906] | 494 | |
---|
| 495 | def removeData(self): |
---|
| 496 | """Remove the existing data reference from the P(r) Persepective""" |
---|
| 497 | if self.dmaxWindow is not None: |
---|
[b685c7b] | 498 | self.dmaxWindow.done() |
---|
[47bf906] | 499 | self.dmaxWindow = None |
---|
| 500 | self.dataList.removeItem(self.dataList.currentIndex()) |
---|
| 501 | self._data_list.pop(self._data) |
---|
[e51e078] | 502 | # Last file removed |
---|
| 503 | if len(self._data_list) == 0: |
---|
[47bf906] | 504 | self._data = None |
---|
| 505 | self._data_set = None |
---|
[b685c7b] | 506 | self.pr_plot = None |
---|
| 507 | self.data_plot = None |
---|
[e51e078] | 508 | self._calculator = Invertor() |
---|
[b685c7b] | 509 | self.logic.data = self._data_set |
---|
| 510 | self.nTermsSuggested = NUMBER_OF_TERMS |
---|
| 511 | self.noOfTermsSuggestionButton.setText("{:n}".format( |
---|
| 512 | self.nTermsSuggested)) |
---|
| 513 | self.regConstantSuggestionButton.setText("{:-3.2g}".format( |
---|
| 514 | REGULARIZATION)) |
---|
[47bf906] | 515 | self.enableButtons() |
---|
[b685c7b] | 516 | self.setupModel() |
---|
[ba4e3ba] | 517 | else: |
---|
| 518 | self.dataList.setCurrentIndex(0) |
---|
| 519 | self.updateGuiValues() |
---|
[fa81e94] | 520 | |
---|
| 521 | ###################################################################### |
---|
| 522 | # Thread Creators |
---|
| 523 | def startThreadAll(self): |
---|
[e51e078] | 524 | for data_ref in self._data_list.keys(): |
---|
| 525 | self.setCurrentData(data_ref) |
---|
[fa81e94] | 526 | self.startThread() |
---|
| 527 | |
---|
| 528 | def startThread(self): |
---|
| 529 | """ |
---|
| 530 | Start a calculation thread |
---|
| 531 | """ |
---|
| 532 | from .Thread import CalcPr |
---|
| 533 | |
---|
| 534 | # Set data before running the calculations |
---|
| 535 | self.update_calculator() |
---|
| 536 | |
---|
| 537 | # If a thread is already started, stop it |
---|
| 538 | if self.calc_thread is not None and self.calc_thread.isrunning(): |
---|
| 539 | self.calc_thread.stop() |
---|
| 540 | pr = self._calculator.clone() |
---|
| 541 | nfunc = self.getNFunc() |
---|
| 542 | self.calc_thread = CalcPr(pr, nfunc, |
---|
| 543 | error_func=self._threadError, |
---|
[f1ec901] | 544 | completefn=self._calculateCompleted, |
---|
| 545 | updatefn=None) |
---|
[fa81e94] | 546 | self.calc_thread.queue() |
---|
| 547 | self.calc_thread.ready(2.5) |
---|
| 548 | |
---|
| 549 | def performEstimateNT(self): |
---|
| 550 | """ |
---|
[f1ec901] | 551 | Perform parameter estimation |
---|
[fa81e94] | 552 | """ |
---|
| 553 | from .Thread import EstimateNT |
---|
| 554 | |
---|
| 555 | # If a thread is already started, stop it |
---|
| 556 | if (self.estimation_thread is not None and |
---|
| 557 | self.estimation_thread.isrunning()): |
---|
| 558 | self.estimation_thread.stop() |
---|
| 559 | pr = self._calculator.clone() |
---|
| 560 | # Skip the slit settings for the estimation |
---|
| 561 | # It slows down the application and it doesn't change the estimates |
---|
| 562 | pr.slit_height = 0.0 |
---|
| 563 | pr.slit_width = 0.0 |
---|
| 564 | nfunc = self.getNFunc() |
---|
[f1ec901] | 565 | |
---|
[fa81e94] | 566 | self.estimation_thread = EstimateNT(pr, nfunc, |
---|
| 567 | error_func=self._threadError, |
---|
| 568 | completefn=self._estimateNTCompleted, |
---|
| 569 | updatefn=None) |
---|
| 570 | self.estimation_thread.queue() |
---|
| 571 | self.estimation_thread.ready(2.5) |
---|
| 572 | |
---|
| 573 | def performEstimate(self): |
---|
| 574 | """ |
---|
| 575 | Perform parameter estimation |
---|
| 576 | """ |
---|
| 577 | from .Thread import EstimatePr |
---|
| 578 | |
---|
| 579 | self.startThread() |
---|
| 580 | |
---|
| 581 | # If a thread is already started, stop it |
---|
| 582 | if (self.estimation_thread is not None and |
---|
| 583 | self.estimation_thread.isrunning()): |
---|
| 584 | self.estimation_thread.stop() |
---|
| 585 | pr = self._calculator.clone() |
---|
| 586 | nfunc = self.getNFunc() |
---|
| 587 | self.estimation_thread = EstimatePr(pr, nfunc, |
---|
| 588 | error_func=self._threadError, |
---|
| 589 | completefn=self._estimateCompleted, |
---|
| 590 | updatefn=None) |
---|
| 591 | self.estimation_thread.queue() |
---|
| 592 | self.estimation_thread.ready(2.5) |
---|
| 593 | |
---|
| 594 | ###################################################################### |
---|
| 595 | # Thread Complete |
---|
| 596 | |
---|
| 597 | def _estimateCompleted(self, alpha, message, elapsed): |
---|
[f1ec901] | 598 | ''' Send a signal to the main thread for model update''' |
---|
| 599 | self.estimateSignal.emit((alpha, message, elapsed)) |
---|
| 600 | |
---|
| 601 | def _estimateUpdate(self, output_tuple): |
---|
[fa81e94] | 602 | """ |
---|
| 603 | Parameter estimation completed, |
---|
| 604 | display the results to the user |
---|
| 605 | |
---|
| 606 | :param alpha: estimated best alpha |
---|
| 607 | :param elapsed: computation time |
---|
| 608 | """ |
---|
[f1ec901] | 609 | alpha, message, elapsed = output_tuple |
---|
[fa81e94] | 610 | if message: |
---|
| 611 | logging.info(message) |
---|
| 612 | self.performEstimateNT() |
---|
| 613 | |
---|
| 614 | def _estimateNTCompleted(self, nterms, alpha, message, elapsed): |
---|
[f1ec901] | 615 | ''' Send a signal to the main thread for model update''' |
---|
| 616 | self.estimateNTSignal.emit((nterms, alpha, message, elapsed)) |
---|
| 617 | |
---|
| 618 | def _estimateNTUpdate(self, output_tuple): |
---|
[fa81e94] | 619 | """ |
---|
| 620 | Parameter estimation completed, |
---|
| 621 | display the results to the user |
---|
| 622 | |
---|
| 623 | :param alpha: estimated best alpha |
---|
| 624 | :param nterms: estimated number of terms |
---|
| 625 | :param elapsed: computation time |
---|
| 626 | """ |
---|
[f1ec901] | 627 | nterms, alpha, message, elapsed = output_tuple |
---|
[e51e078] | 628 | self._calculator.elapsed = elapsed |
---|
| 629 | self._calculator.suggested_alpha = alpha |
---|
| 630 | self.nTermsSuggested = nterms |
---|
[fa81e94] | 631 | # Save useful info |
---|
[e51e078] | 632 | self.updateGuiValues() |
---|
[fa81e94] | 633 | if message: |
---|
| 634 | logging.info(message) |
---|
| 635 | |
---|
[f1ec901] | 636 | def _calculateCompleted(self, out, cov, pr, elapsed): |
---|
| 637 | ''' Send a signal to the main thread for model update''' |
---|
| 638 | self.calculateSignal.emit((out, cov, pr, elapsed)) |
---|
| 639 | |
---|
| 640 | def _calculateUpdate(self, output_tuple): |
---|
[fa81e94] | 641 | """ |
---|
| 642 | Method called with the results when the inversion is done |
---|
| 643 | |
---|
| 644 | :param out: output coefficient for the base functions |
---|
| 645 | :param cov: covariance matrix |
---|
| 646 | :param pr: Invertor instance |
---|
| 647 | :param elapsed: time spent computing |
---|
| 648 | """ |
---|
[f1ec901] | 649 | out, cov, pr, elapsed = output_tuple |
---|
[fa81e94] | 650 | # Save useful info |
---|
| 651 | cov = np.ascontiguousarray(cov) |
---|
| 652 | pr.cov = cov |
---|
| 653 | pr.out = out |
---|
| 654 | pr.elapsed = elapsed |
---|
| 655 | |
---|
| 656 | # Save Pr invertor |
---|
| 657 | self._calculator = pr |
---|
[f1ec901] | 658 | |
---|
[fa81e94] | 659 | # Create new P(r) and fit plots |
---|
| 660 | if self.pr_plot is None: |
---|
| 661 | self.pr_plot = self.logic.newPRPlot(out, self._calculator, cov) |
---|
| 662 | if self.data_plot is None: |
---|
| 663 | self.data_plot = self.logic.new1DPlot(out, self._calculator) |
---|
[e51e078] | 664 | self.updateDataList(self._data) |
---|
| 665 | self.updateGuiValues() |
---|
[fa81e94] | 666 | |
---|
| 667 | def _threadError(self, error): |
---|
| 668 | """ |
---|
| 669 | Call-back method for calculation errors |
---|
| 670 | """ |
---|
| 671 | logging.warning(error) |
---|