[60af928] | 1 | import json |
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[cd31251] | 2 | import os |
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[60af928] | 3 | from collections import defaultdict |
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[b3e8629] | 4 | |
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[d4dac80] | 5 | import copy |
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[5236449] | 6 | import logging |
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| 7 | import traceback |
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[cbcdd2c] | 8 | from twisted.internet import threads |
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[1bc27f1] | 9 | import numpy as np |
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[e90988c] | 10 | import webbrowser |
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[5236449] | 11 | |
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[4992ff2] | 12 | from PyQt5 import QtCore |
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| 13 | from PyQt5 import QtGui |
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| 14 | from PyQt5 import QtWidgets |
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[60af928] | 15 | |
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| 16 | from sasmodels import generate |
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| 17 | from sasmodels import modelinfo |
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[5236449] | 18 | from sasmodels.sasview_model import load_standard_models |
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[18d5c94a] | 19 | from sasmodels.sasview_model import MultiplicationModel |
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[358b39d] | 20 | from sasmodels.weights import MODELS as POLYDISPERSITY_MODELS |
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| 21 | |
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[f182f93] | 22 | from sas.sascalc.fit.BumpsFitting import BumpsFit as Fit |
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[57be490] | 23 | from sas.sascalc.fit.pagestate import PageState |
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[5236449] | 24 | |
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[83eb5208] | 25 | import sas.qtgui.Utilities.GuiUtils as GuiUtils |
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[14ec91c5] | 26 | import sas.qtgui.Utilities.LocalConfig as LocalConfig |
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[dc5ef15] | 27 | from sas.qtgui.Utilities.CategoryInstaller import CategoryInstaller |
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| 28 | from sas.qtgui.Plotting.PlotterData import Data1D |
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| 29 | from sas.qtgui.Plotting.PlotterData import Data2D |
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[5236449] | 30 | |
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[1bc27f1] | 31 | from sas.qtgui.Perspectives.Fitting.UI.FittingWidgetUI import Ui_FittingWidgetUI |
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[dc5ef15] | 32 | from sas.qtgui.Perspectives.Fitting.FitThread import FitThread |
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[7adc2a8] | 33 | from sas.qtgui.Perspectives.Fitting.ConsoleUpdate import ConsoleUpdate |
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| 34 | |
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[dc5ef15] | 35 | from sas.qtgui.Perspectives.Fitting.ModelThread import Calc1D |
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| 36 | from sas.qtgui.Perspectives.Fitting.ModelThread import Calc2D |
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[4d457df] | 37 | from sas.qtgui.Perspectives.Fitting.FittingLogic import FittingLogic |
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| 38 | from sas.qtgui.Perspectives.Fitting import FittingUtilities |
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[3b3b40b] | 39 | from sas.qtgui.Perspectives.Fitting import ModelUtilities |
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[1bc27f1] | 40 | from sas.qtgui.Perspectives.Fitting.SmearingWidget import SmearingWidget |
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| 41 | from sas.qtgui.Perspectives.Fitting.OptionsWidget import OptionsWidget |
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| 42 | from sas.qtgui.Perspectives.Fitting.FitPage import FitPage |
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[ad6b4e2] | 43 | from sas.qtgui.Perspectives.Fitting.ViewDelegate import ModelViewDelegate |
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[6011788] | 44 | from sas.qtgui.Perspectives.Fitting.ViewDelegate import PolyViewDelegate |
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[b00414d] | 45 | from sas.qtgui.Perspectives.Fitting.ViewDelegate import MagnetismViewDelegate |
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[14ec91c5] | 46 | from sas.qtgui.Perspectives.Fitting.Constraint import Constraint |
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[eae226b] | 47 | from sas.qtgui.Perspectives.Fitting.MultiConstraint import MultiConstraint |
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[57be490] | 48 | from sas.qtgui.Perspectives.Fitting.ReportPageLogic import ReportPageLogic |
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| 49 | |
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[60af928] | 50 | |
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[8222f171] | 51 | |
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[60af928] | 52 | TAB_MAGNETISM = 4 |
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| 53 | TAB_POLY = 3 |
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[cbcdd2c] | 54 | CATEGORY_DEFAULT = "Choose category..." |
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[4d457df] | 55 | CATEGORY_STRUCTURE = "Structure Factor" |
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[3b3b40b] | 56 | CATEGORY_CUSTOM = "Plugin Models" |
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[351b53e] | 57 | STRUCTURE_DEFAULT = "None" |
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[60af928] | 58 | |
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[358b39d] | 59 | DEFAULT_POLYDISP_FUNCTION = 'gaussian' |
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| 60 | |
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[7adc2a8] | 61 | |
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[dc71408] | 62 | logger = logging.getLogger(__name__) |
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| 63 | |
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| 64 | |
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[13cd397] | 65 | class ToolTippedItemModel(QtGui.QStandardItemModel): |
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[f54ce30] | 66 | """ |
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| 67 | Subclass from QStandardItemModel to allow displaying tooltips in |
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| 68 | QTableView model. |
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| 69 | """ |
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[d0dfcb2] | 70 | def __init__(self, parent=None): |
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[8e2cd79] | 71 | QtGui.QStandardItemModel.__init__(self, parent) |
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[13cd397] | 72 | |
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[fbfc488] | 73 | def headerData(self, section, orientation, role=QtCore.Qt.DisplayRole): |
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[f54ce30] | 74 | """ |
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| 75 | Displays tooltip for each column's header |
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| 76 | :param section: |
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| 77 | :param orientation: |
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| 78 | :param role: |
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| 79 | :return: |
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| 80 | """ |
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[13cd397] | 81 | if role == QtCore.Qt.ToolTipRole: |
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| 82 | if orientation == QtCore.Qt.Horizontal: |
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[b3e8629] | 83 | return str(self.header_tooltips[section]) |
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[ca7c6bd] | 84 | |
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[a95c44b] | 85 | return QtGui.QStandardItemModel.headerData(self, section, orientation, role) |
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[13cd397] | 86 | |
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[4992ff2] | 87 | class FittingWidget(QtWidgets.QWidget, Ui_FittingWidgetUI): |
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[60af928] | 88 | """ |
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[f46f6dc] | 89 | Main widget for selecting form and structure factor models |
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[60af928] | 90 | """ |
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[be8f4b0] | 91 | constraintAddedSignal = QtCore.pyqtSignal(list) |
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| 92 | newModelSignal = QtCore.pyqtSignal() |
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[3b3b40b] | 93 | fittingFinishedSignal = QtCore.pyqtSignal(tuple) |
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| 94 | batchFittingFinishedSignal = QtCore.pyqtSignal(tuple) |
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[d4dac80] | 95 | Calc1DFinishedSignal = QtCore.pyqtSignal(tuple) |
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| 96 | Calc2DFinishedSignal = QtCore.pyqtSignal(tuple) |
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[3b3b40b] | 97 | |
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[1bc27f1] | 98 | def __init__(self, parent=None, data=None, tab_id=1): |
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[60af928] | 99 | |
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| 100 | super(FittingWidget, self).__init__() |
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| 101 | |
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[86f88d1] | 102 | # Necessary globals |
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[cbcdd2c] | 103 | self.parent = parent |
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[2a432e7] | 104 | |
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| 105 | # Which tab is this widget displayed in? |
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| 106 | self.tab_id = tab_id |
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| 107 | |
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| 108 | # Globals |
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| 109 | self.initializeGlobals() |
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| 110 | |
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[d4dac80] | 111 | # data index for the batch set |
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| 112 | self.data_index = 0 |
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| 113 | # Main Data[12]D holders |
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| 114 | # Logics.data contains a single Data1D/Data2D object |
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| 115 | self._logic = [FittingLogic()] |
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| 116 | |
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[2a432e7] | 117 | # Main GUI setup up |
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| 118 | self.setupUi(self) |
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| 119 | self.setWindowTitle("Fitting") |
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| 120 | |
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| 121 | # Set up tabs widgets |
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| 122 | self.initializeWidgets() |
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| 123 | |
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| 124 | # Set up models and views |
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| 125 | self.initializeModels() |
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| 126 | |
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| 127 | # Defaults for the structure factors |
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| 128 | self.setDefaultStructureCombo() |
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| 129 | |
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| 130 | # Make structure factor and model CBs disabled |
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| 131 | self.disableModelCombo() |
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| 132 | self.disableStructureCombo() |
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| 133 | |
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| 134 | # Generate the category list for display |
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| 135 | self.initializeCategoryCombo() |
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| 136 | |
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| 137 | # Initial control state |
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| 138 | self.initializeControls() |
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| 139 | |
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[ebfe223] | 140 | QtWidgets.QApplication.processEvents() |
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| 141 | |
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| 142 | # Connect signals to controls |
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| 143 | self.initializeSignals() |
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| 144 | |
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[d4dac80] | 145 | if data is not None: |
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| 146 | self.data = data |
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[2a432e7] | 147 | |
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[457d961] | 148 | # New font to display angstrom symbol |
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| 149 | new_font = 'font-family: -apple-system, "Helvetica Neue", "Ubuntu";' |
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| 150 | self.label_17.setStyleSheet(new_font) |
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| 151 | self.label_19.setStyleSheet(new_font) |
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| 152 | |
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[d4dac80] | 153 | @property |
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| 154 | def logic(self): |
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| 155 | # make sure the logic contains at least one element |
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[8e2cd79] | 156 | assert self._logic |
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[d4dac80] | 157 | # logic connected to the currently shown data |
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| 158 | return self._logic[self.data_index] |
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[2a432e7] | 159 | |
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| 160 | @property |
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| 161 | def data(self): |
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| 162 | return self.logic.data |
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| 163 | |
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| 164 | @data.setter |
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| 165 | def data(self, value): |
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| 166 | """ data setter """ |
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[f7d14a1] | 167 | # Value is either a list of indices for batch fitting or a simple index |
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| 168 | # for standard fitting. Assure we have a list, regardless. |
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[ee18d33] | 169 | if isinstance(value, list): |
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| 170 | self.is_batch_fitting = True |
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| 171 | else: |
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| 172 | value = [value] |
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| 173 | |
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| 174 | assert isinstance(value[0], QtGui.QStandardItem) |
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| 175 | |
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| 176 | # Keep reference to all datasets for batch |
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| 177 | self.all_data = value |
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[2a432e7] | 178 | |
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[d4dac80] | 179 | # Create logics with data items |
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[f7d14a1] | 180 | # Logics.data contains only a single Data1D/Data2D object |
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[87dfca4] | 181 | if len(value) == 1: |
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| 182 | # single data logic is already defined, update data on it |
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| 183 | self._logic[0].data = GuiUtils.dataFromItem(value[0]) |
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| 184 | else: |
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| 185 | # batch datasets |
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[54492dc] | 186 | self._logic = [] |
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[87dfca4] | 187 | for data_item in value: |
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| 188 | logic = FittingLogic(data=GuiUtils.dataFromItem(data_item)) |
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| 189 | self._logic.append(logic) |
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[2a432e7] | 190 | |
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| 191 | # Overwrite data type descriptor |
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| 192 | self.is2D = True if isinstance(self.logic.data, Data2D) else False |
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| 193 | |
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[f7d14a1] | 194 | # Let others know we're full of data now |
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[2a432e7] | 195 | self.data_is_loaded = True |
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| 196 | |
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| 197 | # Enable/disable UI components |
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| 198 | self.setEnablementOnDataLoad() |
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| 199 | |
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| 200 | def initializeGlobals(self): |
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| 201 | """ |
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| 202 | Initialize global variables used in this class |
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| 203 | """ |
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[cbcdd2c] | 204 | # SasModel is loaded |
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[60af928] | 205 | self.model_is_loaded = False |
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[cbcdd2c] | 206 | # Data[12]D passed and set |
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[5236449] | 207 | self.data_is_loaded = False |
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[ee18d33] | 208 | # Batch/single fitting |
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| 209 | self.is_batch_fitting = False |
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[7fd20fc] | 210 | self.is_chain_fitting = False |
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[ded5e77] | 211 | # Is the fit job running? |
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[8e2cd79] | 212 | self.fit_started = False |
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[ded5e77] | 213 | # The current fit thread |
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| 214 | self.calc_fit = None |
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[cbcdd2c] | 215 | # Current SasModel in view |
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[5236449] | 216 | self.kernel_module = None |
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[cbcdd2c] | 217 | # Current SasModel view dimension |
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[60af928] | 218 | self.is2D = False |
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[cbcdd2c] | 219 | # Current SasModel is multishell |
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[86f88d1] | 220 | self.model_has_shells = False |
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[cbcdd2c] | 221 | # Utility variable to enable unselectable option in category combobox |
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[86f88d1] | 222 | self._previous_category_index = 0 |
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[cbcdd2c] | 223 | # Utility variable for multishell display |
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[86f88d1] | 224 | self._last_model_row = 0 |
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[cbcdd2c] | 225 | # Dictionary of {model name: model class} for the current category |
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[5236449] | 226 | self.models = {} |
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[f182f93] | 227 | # Parameters to fit |
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[6dbff18] | 228 | self.main_params_to_fit = [] |
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| 229 | self.poly_params_to_fit = [] |
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| 230 | self.magnet_params_to_fit = [] |
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| 231 | |
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[180bd54] | 232 | # Fit options |
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| 233 | self.q_range_min = 0.005 |
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| 234 | self.q_range_max = 0.1 |
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| 235 | self.npts = 25 |
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| 236 | self.log_points = False |
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| 237 | self.weighting = 0 |
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[2add354] | 238 | self.chi2 = None |
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[6011788] | 239 | # Does the control support UNDO/REDO |
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| 240 | # temporarily off |
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[2241130] | 241 | self.undo_supported = False |
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| 242 | self.page_stack = [] |
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[377ade1] | 243 | self.all_data = [] |
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[3b3b40b] | 244 | # custom plugin models |
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| 245 | # {model.name:model} |
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| 246 | self.custom_models = self.customModels() |
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[8222f171] | 247 | # Polydisp widget table default index for function combobox |
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| 248 | self.orig_poly_index = 3 |
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[d4dac80] | 249 | # copy of current kernel model |
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| 250 | self.kernel_module_copy = None |
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[6011788] | 251 | |
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[116dd4c1] | 252 | # Page id for fitting |
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| 253 | # To keep with previous SasView values, use 200 as the start offset |
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| 254 | self.page_id = 200 + self.tab_id |
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| 255 | |
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[d48cc19] | 256 | # Data for chosen model |
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| 257 | self.model_data = None |
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| 258 | |
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[a9b568c] | 259 | # Which shell is being currently displayed? |
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| 260 | self.current_shell_displayed = 0 |
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[0d13814] | 261 | # List of all shell-unique parameters |
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| 262 | self.shell_names = [] |
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[b00414d] | 263 | |
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| 264 | # Error column presence in parameter display |
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[f182f93] | 265 | self.has_error_column = False |
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[aca8418] | 266 | self.has_poly_error_column = False |
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[b00414d] | 267 | self.has_magnet_error_column = False |
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[a9b568c] | 268 | |
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[2a432e7] | 269 | # signal communicator |
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[cbcdd2c] | 270 | self.communicate = self.parent.communicate |
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[60af928] | 271 | |
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[2a432e7] | 272 | def initializeWidgets(self): |
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| 273 | """ |
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| 274 | Initialize widgets for tabs |
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| 275 | """ |
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[180bd54] | 276 | # Options widget |
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[4992ff2] | 277 | layout = QtWidgets.QGridLayout() |
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[180bd54] | 278 | self.options_widget = OptionsWidget(self, self.logic) |
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[1bc27f1] | 279 | layout.addWidget(self.options_widget) |
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[180bd54] | 280 | self.tabOptions.setLayout(layout) |
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| 281 | |
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[e1e3e09] | 282 | # Smearing widget |
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[4992ff2] | 283 | layout = QtWidgets.QGridLayout() |
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[e1e3e09] | 284 | self.smearing_widget = SmearingWidget(self) |
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[1bc27f1] | 285 | layout.addWidget(self.smearing_widget) |
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[180bd54] | 286 | self.tabResolution.setLayout(layout) |
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[e1e3e09] | 287 | |
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[b1e36a3] | 288 | # Define bold font for use in various controls |
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[1bc27f1] | 289 | self.boldFont = QtGui.QFont() |
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[a0f5c36] | 290 | self.boldFont.setBold(True) |
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| 291 | |
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| 292 | # Set data label |
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[b1e36a3] | 293 | self.label.setFont(self.boldFont) |
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| 294 | self.label.setText("No data loaded") |
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| 295 | self.lblFilename.setText("") |
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| 296 | |
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[6ff2eb3] | 297 | # Magnetic angles explained in one picture |
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[4992ff2] | 298 | self.magneticAnglesWidget = QtWidgets.QWidget() |
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| 299 | labl = QtWidgets.QLabel(self.magneticAnglesWidget) |
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[6ff2eb3] | 300 | pixmap = QtGui.QPixmap(GuiUtils.IMAGES_DIRECTORY_LOCATION + '/M_angles_pic.bmp') |
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| 301 | labl.setPixmap(pixmap) |
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| 302 | self.magneticAnglesWidget.setFixedSize(pixmap.width(), pixmap.height()) |
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| 303 | |
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[2a432e7] | 304 | def initializeModels(self): |
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| 305 | """ |
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| 306 | Set up models and views |
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| 307 | """ |
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[86f88d1] | 308 | # Set the main models |
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[cd31251] | 309 | # We can't use a single model here, due to restrictions on flattening |
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| 310 | # the model tree with subclassed QAbstractProxyModel... |
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[13cd397] | 311 | self._model_model = ToolTippedItemModel() |
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| 312 | self._poly_model = ToolTippedItemModel() |
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| 313 | self._magnet_model = ToolTippedItemModel() |
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[60af928] | 314 | |
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| 315 | # Param model displayed in param list |
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| 316 | self.lstParams.setModel(self._model_model) |
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[5236449] | 317 | self.readCategoryInfo() |
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[4992ff2] | 318 | |
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[60af928] | 319 | self.model_parameters = None |
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[ad6b4e2] | 320 | |
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| 321 | # Delegates for custom editing and display |
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| 322 | self.lstParams.setItemDelegate(ModelViewDelegate(self)) |
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| 323 | |
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[86f88d1] | 324 | self.lstParams.setAlternatingRowColors(True) |
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[61a92d4] | 325 | stylesheet = """ |
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[457d961] | 326 | |
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| 327 | QTreeView { |
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| 328 | paint-alternating-row-colors-for-empty-area:0; |
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| 329 | } |
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| 330 | |
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[97df8a9] | 331 | QTreeView::item { |
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| 332 | border: 1px; |
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[ebfe223] | 333 | padding: 2px 1px; |
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[97df8a9] | 334 | } |
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| 335 | |
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[2a432e7] | 336 | QTreeView::item:hover { |
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| 337 | background: qlineargradient(x1: 0, y1: 0, x2: 0, y2: 1, stop: 0 #e7effd, stop: 1 #cbdaf1); |
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| 338 | border: 1px solid #bfcde4; |
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[61a92d4] | 339 | } |
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[2a432e7] | 340 | |
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| 341 | QTreeView::item:selected { |
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| 342 | border: 1px solid #567dbc; |
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| 343 | } |
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| 344 | |
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| 345 | QTreeView::item:selected:active{ |
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| 346 | background: qlineargradient(x1: 0, y1: 0, x2: 0, y2: 1, stop: 0 #6ea1f1, stop: 1 #567dbc); |
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| 347 | } |
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| 348 | |
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| 349 | QTreeView::item:selected:!active { |
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| 350 | background: qlineargradient(x1: 0, y1: 0, x2: 0, y2: 1, stop: 0 #6b9be8, stop: 1 #577fbf); |
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| 351 | } |
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| 352 | """ |
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[61a92d4] | 353 | self.lstParams.setStyleSheet(stylesheet) |
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[672b8ab] | 354 | self.lstParams.setContextMenuPolicy(QtCore.Qt.CustomContextMenu) |
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[7fd20fc] | 355 | self.lstParams.customContextMenuRequested.connect(self.showModelContextMenu) |
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[457d961] | 356 | self.lstParams.setAttribute(QtCore.Qt.WA_MacShowFocusRect, False) |
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[60af928] | 357 | # Poly model displayed in poly list |
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[811bec1] | 358 | self.lstPoly.setModel(self._poly_model) |
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[60af928] | 359 | self.setPolyModel() |
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| 360 | self.setTableProperties(self.lstPoly) |
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[6011788] | 361 | # Delegates for custom editing and display |
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[aca8418] | 362 | self.lstPoly.setItemDelegate(PolyViewDelegate(self)) |
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| 363 | # Polydispersity function combo response |
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| 364 | self.lstPoly.itemDelegate().combo_updated.connect(self.onPolyComboIndexChange) |
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[e43fc91] | 365 | self.lstPoly.itemDelegate().filename_updated.connect(self.onPolyFilenameChange) |
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[60af928] | 366 | |
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| 367 | # Magnetism model displayed in magnetism list |
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| 368 | self.lstMagnetic.setModel(self._magnet_model) |
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| 369 | self.setMagneticModel() |
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| 370 | self.setTableProperties(self.lstMagnetic) |
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[b00414d] | 371 | # Delegates for custom editing and display |
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| 372 | self.lstMagnetic.setItemDelegate(MagnetismViewDelegate(self)) |
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[60af928] | 373 | |
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[2a432e7] | 374 | def initializeCategoryCombo(self): |
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| 375 | """ |
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| 376 | Model category combo setup |
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| 377 | """ |
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[60af928] | 378 | category_list = sorted(self.master_category_dict.keys()) |
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[86f88d1] | 379 | self.cbCategory.addItem(CATEGORY_DEFAULT) |
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[60af928] | 380 | self.cbCategory.addItems(category_list) |
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[3d18691] | 381 | if CATEGORY_STRUCTURE not in category_list: |
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| 382 | self.cbCategory.addItem(CATEGORY_STRUCTURE) |
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[6f7f652] | 383 | self.cbCategory.setCurrentIndex(0) |
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[60af928] | 384 | |
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[e1e3e09] | 385 | def setEnablementOnDataLoad(self): |
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| 386 | """ |
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| 387 | Enable/disable various UI elements based on data loaded |
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| 388 | """ |
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[cbcdd2c] | 389 | # Tag along functionality |
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[b1e36a3] | 390 | self.label.setText("Data loaded from: ") |
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[a0f5c36] | 391 | self.lblFilename.setText(self.logic.data.filename) |
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[5236449] | 392 | self.updateQRange() |
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[e1e3e09] | 393 | # Switch off Data2D control |
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| 394 | self.chk2DView.setEnabled(False) |
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| 395 | self.chk2DView.setVisible(False) |
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[6ff2eb3] | 396 | self.chkMagnetism.setEnabled(self.is2D) |
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[e20870bc] | 397 | self.tabFitting.setTabEnabled(TAB_MAGNETISM, self.chkMagnetism.isChecked()) |
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[ee18d33] | 398 | # Combo box or label for file name" |
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| 399 | if self.is_batch_fitting: |
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| 400 | self.lblFilename.setVisible(False) |
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| 401 | for dataitem in self.all_data: |
---|
| 402 | filename = GuiUtils.dataFromItem(dataitem).filename |
---|
| 403 | self.cbFileNames.addItem(filename) |
---|
| 404 | self.cbFileNames.setVisible(True) |
---|
[7fd20fc] | 405 | self.chkChainFit.setEnabled(True) |
---|
| 406 | self.chkChainFit.setVisible(True) |
---|
[38eb433] | 407 | # This panel is not designed to view individual fits, so disable plotting |
---|
| 408 | self.cmdPlot.setVisible(False) |
---|
[180bd54] | 409 | # Similarly on other tabs |
---|
| 410 | self.options_widget.setEnablementOnDataLoad() |
---|
[f7d14a1] | 411 | self.onSelectModel() |
---|
[e1e3e09] | 412 | # Smearing tab |
---|
[9a7c81c] | 413 | self.smearing_widget.updateData(self.data) |
---|
[60af928] | 414 | |
---|
[f46f6dc] | 415 | def acceptsData(self): |
---|
| 416 | """ Tells the caller this widget can accept new dataset """ |
---|
[5236449] | 417 | return not self.data_is_loaded |
---|
[f46f6dc] | 418 | |
---|
[6f7f652] | 419 | def disableModelCombo(self): |
---|
[cbcdd2c] | 420 | """ Disable the combobox """ |
---|
[6f7f652] | 421 | self.cbModel.setEnabled(False) |
---|
[b1e36a3] | 422 | self.lblModel.setEnabled(False) |
---|
[6f7f652] | 423 | |
---|
| 424 | def enableModelCombo(self): |
---|
[cbcdd2c] | 425 | """ Enable the combobox """ |
---|
[6f7f652] | 426 | self.cbModel.setEnabled(True) |
---|
[b1e36a3] | 427 | self.lblModel.setEnabled(True) |
---|
[6f7f652] | 428 | |
---|
| 429 | def disableStructureCombo(self): |
---|
[cbcdd2c] | 430 | """ Disable the combobox """ |
---|
[6f7f652] | 431 | self.cbStructureFactor.setEnabled(False) |
---|
[b1e36a3] | 432 | self.lblStructure.setEnabled(False) |
---|
[6f7f652] | 433 | |
---|
| 434 | def enableStructureCombo(self): |
---|
[cbcdd2c] | 435 | """ Enable the combobox """ |
---|
[6f7f652] | 436 | self.cbStructureFactor.setEnabled(True) |
---|
[b1e36a3] | 437 | self.lblStructure.setEnabled(True) |
---|
[6f7f652] | 438 | |
---|
[0268aed] | 439 | def togglePoly(self, isChecked): |
---|
[454670d] | 440 | """ Enable/disable the polydispersity tab """ |
---|
[0268aed] | 441 | self.tabFitting.setTabEnabled(TAB_POLY, isChecked) |
---|
| 442 | |
---|
| 443 | def toggleMagnetism(self, isChecked): |
---|
[454670d] | 444 | """ Enable/disable the magnetism tab """ |
---|
[0268aed] | 445 | self.tabFitting.setTabEnabled(TAB_MAGNETISM, isChecked) |
---|
| 446 | |
---|
[7fd20fc] | 447 | def toggleChainFit(self, isChecked): |
---|
| 448 | """ Enable/disable chain fitting """ |
---|
| 449 | self.is_chain_fitting = isChecked |
---|
| 450 | |
---|
[0268aed] | 451 | def toggle2D(self, isChecked): |
---|
[454670d] | 452 | """ Enable/disable the controls dependent on 1D/2D data instance """ |
---|
[0268aed] | 453 | self.chkMagnetism.setEnabled(isChecked) |
---|
| 454 | self.is2D = isChecked |
---|
[1970780] | 455 | # Reload the current model |
---|
[e1e3e09] | 456 | if self.kernel_module: |
---|
| 457 | self.onSelectModel() |
---|
[5236449] | 458 | |
---|
[8b480d27] | 459 | @classmethod |
---|
| 460 | def customModels(cls): |
---|
[3b3b40b] | 461 | """ Reads in file names in the custom plugin directory """ |
---|
| 462 | return ModelUtilities._find_models() |
---|
| 463 | |
---|
[86f88d1] | 464 | def initializeControls(self): |
---|
| 465 | """ |
---|
| 466 | Set initial control enablement |
---|
| 467 | """ |
---|
[ee18d33] | 468 | self.cbFileNames.setVisible(False) |
---|
[86f88d1] | 469 | self.cmdFit.setEnabled(False) |
---|
[d48cc19] | 470 | self.cmdPlot.setEnabled(False) |
---|
[180bd54] | 471 | self.options_widget.cmdComputePoints.setVisible(False) # probably redundant |
---|
[86f88d1] | 472 | self.chkPolydispersity.setEnabled(True) |
---|
| 473 | self.chkPolydispersity.setCheckState(False) |
---|
| 474 | self.chk2DView.setEnabled(True) |
---|
| 475 | self.chk2DView.setCheckState(False) |
---|
| 476 | self.chkMagnetism.setEnabled(False) |
---|
| 477 | self.chkMagnetism.setCheckState(False) |
---|
[7fd20fc] | 478 | self.chkChainFit.setEnabled(False) |
---|
| 479 | self.chkChainFit.setVisible(False) |
---|
[cbcdd2c] | 480 | # Tabs |
---|
[86f88d1] | 481 | self.tabFitting.setTabEnabled(TAB_POLY, False) |
---|
| 482 | self.tabFitting.setTabEnabled(TAB_MAGNETISM, False) |
---|
| 483 | self.lblChi2Value.setText("---") |
---|
[e1e3e09] | 484 | # Smearing tab |
---|
[9a7c81c] | 485 | self.smearing_widget.updateData(self.data) |
---|
[180bd54] | 486 | # Line edits in the option tab |
---|
| 487 | self.updateQRange() |
---|
[86f88d1] | 488 | |
---|
| 489 | def initializeSignals(self): |
---|
| 490 | """ |
---|
| 491 | Connect GUI element signals |
---|
| 492 | """ |
---|
[cbcdd2c] | 493 | # Comboboxes |
---|
[cd31251] | 494 | self.cbStructureFactor.currentIndexChanged.connect(self.onSelectStructureFactor) |
---|
| 495 | self.cbCategory.currentIndexChanged.connect(self.onSelectCategory) |
---|
| 496 | self.cbModel.currentIndexChanged.connect(self.onSelectModel) |
---|
[ee18d33] | 497 | self.cbFileNames.currentIndexChanged.connect(self.onSelectBatchFilename) |
---|
[cbcdd2c] | 498 | # Checkboxes |
---|
[86f88d1] | 499 | self.chk2DView.toggled.connect(self.toggle2D) |
---|
| 500 | self.chkPolydispersity.toggled.connect(self.togglePoly) |
---|
| 501 | self.chkMagnetism.toggled.connect(self.toggleMagnetism) |
---|
[7fd20fc] | 502 | self.chkChainFit.toggled.connect(self.toggleChainFit) |
---|
[cbcdd2c] | 503 | # Buttons |
---|
[5236449] | 504 | self.cmdFit.clicked.connect(self.onFit) |
---|
[cbcdd2c] | 505 | self.cmdPlot.clicked.connect(self.onPlot) |
---|
[2add354] | 506 | self.cmdHelp.clicked.connect(self.onHelp) |
---|
[6ff2eb3] | 507 | self.cmdMagneticDisplay.clicked.connect(self.onDisplayMagneticAngles) |
---|
[cbcdd2c] | 508 | |
---|
| 509 | # Respond to change in parameters from the UI |
---|
[b00414d] | 510 | self._model_model.itemChanged.connect(self.onMainParamsChange) |
---|
[eae226b] | 511 | #self.constraintAddedSignal.connect(self.modifyViewOnConstraint) |
---|
[cd31251] | 512 | self._poly_model.itemChanged.connect(self.onPolyModelChange) |
---|
[b00414d] | 513 | self._magnet_model.itemChanged.connect(self.onMagnetModelChange) |
---|
[3b3b40b] | 514 | self.lstParams.selectionModel().selectionChanged.connect(self.onSelectionChanged) |
---|
| 515 | |
---|
| 516 | # Local signals |
---|
| 517 | self.batchFittingFinishedSignal.connect(self.batchFitComplete) |
---|
| 518 | self.fittingFinishedSignal.connect(self.fitComplete) |
---|
[d4dac80] | 519 | self.Calc1DFinishedSignal.connect(self.complete1D) |
---|
| 520 | self.Calc2DFinishedSignal.connect(self.complete2D) |
---|
[86f88d1] | 521 | |
---|
[180bd54] | 522 | # Signals from separate tabs asking for replot |
---|
| 523 | self.options_widget.plot_signal.connect(self.onOptionsUpdate) |
---|
[e20870bc] | 524 | self.options_widget.plot_signal.connect(self.onOptionsUpdate) |
---|
[180bd54] | 525 | |
---|
[3b3b40b] | 526 | # Signals from other widgets |
---|
| 527 | self.communicate.customModelDirectoryChanged.connect(self.onCustomModelChange) |
---|
[57be490] | 528 | self.communicate.saveAnalysisSignal.connect(self.savePageState) |
---|
[9a7c81c] | 529 | self.smearing_widget.smearingChangedSignal.connect(self.onSmearingOptionsUpdate) |
---|
[8e2cd79] | 530 | self.communicate.copyFitParamsSignal.connect(self.onParameterCopy) |
---|
| 531 | self.communicate.pasteFitParamsSignal.connect(self.onParameterPaste) |
---|
[3b3b40b] | 532 | |
---|
[3d18691] | 533 | # Communicator signal |
---|
| 534 | self.communicate.updateModelCategoriesSignal.connect(self.onCategoriesChanged) |
---|
| 535 | |
---|
[d3c0b95] | 536 | def modelName(self): |
---|
| 537 | """ |
---|
| 538 | Returns model name, by default M<tab#>, e.g. M1, M2 |
---|
| 539 | """ |
---|
| 540 | return "M%i" % self.tab_id |
---|
| 541 | |
---|
| 542 | def nameForFittedData(self, name): |
---|
| 543 | """ |
---|
| 544 | Generate name for the current fit |
---|
| 545 | """ |
---|
| 546 | if self.is2D: |
---|
| 547 | name += "2d" |
---|
| 548 | name = "%s [%s]" % (self.modelName(), name) |
---|
| 549 | return name |
---|
[7fd20fc] | 550 | |
---|
[d3c0b95] | 551 | def showModelContextMenu(self, position): |
---|
| 552 | """ |
---|
| 553 | Show context specific menu in the parameter table. |
---|
| 554 | When clicked on parameter(s): fitting/constraints options |
---|
| 555 | When clicked on white space: model description |
---|
| 556 | """ |
---|
[eae226b] | 557 | rows = [s.row() for s in self.lstParams.selectionModel().selectedRows()] |
---|
[7fd20fc] | 558 | menu = self.showModelDescription() if not rows else self.modelContextMenu(rows) |
---|
| 559 | try: |
---|
| 560 | menu.exec_(self.lstParams.viewport().mapToGlobal(position)) |
---|
| 561 | except AttributeError as ex: |
---|
| 562 | logging.error("Error generating context menu: %s" % ex) |
---|
| 563 | return |
---|
| 564 | |
---|
| 565 | def modelContextMenu(self, rows): |
---|
[eae226b] | 566 | """ |
---|
[d3c0b95] | 567 | Create context menu for the parameter selection |
---|
[eae226b] | 568 | """ |
---|
[7fd20fc] | 569 | menu = QtWidgets.QMenu() |
---|
[eae226b] | 570 | num_rows = len(rows) |
---|
[63319b0] | 571 | if num_rows < 1: |
---|
| 572 | return menu |
---|
[7fd20fc] | 573 | # Select for fitting |
---|
[8e2cd79] | 574 | param_string = "parameter " if num_rows == 1 else "parameters " |
---|
| 575 | to_string = "to its current value" if num_rows == 1 else "to their current values" |
---|
[d3c0b95] | 576 | has_constraints = any([self.rowHasConstraint(i) for i in rows]) |
---|
[eae226b] | 577 | |
---|
[7fd20fc] | 578 | self.actionSelect = QtWidgets.QAction(self) |
---|
| 579 | self.actionSelect.setObjectName("actionSelect") |
---|
[eae226b] | 580 | self.actionSelect.setText(QtCore.QCoreApplication.translate("self", "Select "+param_string+" for fitting")) |
---|
[7fd20fc] | 581 | # Unselect from fitting |
---|
| 582 | self.actionDeselect = QtWidgets.QAction(self) |
---|
| 583 | self.actionDeselect.setObjectName("actionDeselect") |
---|
[eae226b] | 584 | self.actionDeselect.setText(QtCore.QCoreApplication.translate("self", "De-select "+param_string+" from fitting")) |
---|
[7fd20fc] | 585 | |
---|
| 586 | self.actionConstrain = QtWidgets.QAction(self) |
---|
| 587 | self.actionConstrain.setObjectName("actionConstrain") |
---|
[eae226b] | 588 | self.actionConstrain.setText(QtCore.QCoreApplication.translate("self", "Constrain "+param_string + to_string)) |
---|
| 589 | |
---|
| 590 | self.actionRemoveConstraint = QtWidgets.QAction(self) |
---|
| 591 | self.actionRemoveConstraint.setObjectName("actionRemoveConstrain") |
---|
| 592 | self.actionRemoveConstraint.setText(QtCore.QCoreApplication.translate("self", "Remove constraint")) |
---|
[7fd20fc] | 593 | |
---|
| 594 | self.actionMultiConstrain = QtWidgets.QAction(self) |
---|
| 595 | self.actionMultiConstrain.setObjectName("actionMultiConstrain") |
---|
| 596 | self.actionMultiConstrain.setText(QtCore.QCoreApplication.translate("self", "Constrain selected parameters to their current values")) |
---|
| 597 | |
---|
| 598 | self.actionMutualMultiConstrain = QtWidgets.QAction(self) |
---|
| 599 | self.actionMutualMultiConstrain.setObjectName("actionMutualMultiConstrain") |
---|
| 600 | self.actionMutualMultiConstrain.setText(QtCore.QCoreApplication.translate("self", "Mutual constrain of selected parameters...")) |
---|
| 601 | |
---|
| 602 | menu.addAction(self.actionSelect) |
---|
| 603 | menu.addAction(self.actionDeselect) |
---|
| 604 | menu.addSeparator() |
---|
| 605 | |
---|
[d3c0b95] | 606 | if has_constraints: |
---|
[eae226b] | 607 | menu.addAction(self.actionRemoveConstraint) |
---|
[d3c0b95] | 608 | #if num_rows == 1: |
---|
| 609 | # menu.addAction(self.actionEditConstraint) |
---|
[eae226b] | 610 | else: |
---|
[7fd20fc] | 611 | menu.addAction(self.actionConstrain) |
---|
[d3c0b95] | 612 | if num_rows == 2: |
---|
| 613 | menu.addAction(self.actionMutualMultiConstrain) |
---|
[7fd20fc] | 614 | |
---|
| 615 | # Define the callbacks |
---|
[0595bb7] | 616 | self.actionConstrain.triggered.connect(self.addSimpleConstraint) |
---|
[eae226b] | 617 | self.actionRemoveConstraint.triggered.connect(self.deleteConstraint) |
---|
[0595bb7] | 618 | self.actionMutualMultiConstrain.triggered.connect(self.showMultiConstraint) |
---|
[7fd20fc] | 619 | self.actionSelect.triggered.connect(self.selectParameters) |
---|
| 620 | self.actionDeselect.triggered.connect(self.deselectParameters) |
---|
| 621 | return menu |
---|
| 622 | |
---|
[0595bb7] | 623 | def showMultiConstraint(self): |
---|
[7fd20fc] | 624 | """ |
---|
| 625 | Show the constraint widget and receive the expression |
---|
| 626 | """ |
---|
[0595bb7] | 627 | selected_rows = self.lstParams.selectionModel().selectedRows() |
---|
[6e58f2f] | 628 | # There have to be only two rows selected. The caller takes care of that |
---|
| 629 | # but let's check the correctness. |
---|
[8e2cd79] | 630 | assert len(selected_rows) == 2 |
---|
[0595bb7] | 631 | |
---|
| 632 | params_list = [s.data() for s in selected_rows] |
---|
[eae226b] | 633 | # Create and display the widget for param1 and param2 |
---|
[7fd20fc] | 634 | mc_widget = MultiConstraint(self, params=params_list) |
---|
[eae226b] | 635 | if mc_widget.exec_() != QtWidgets.QDialog.Accepted: |
---|
| 636 | return |
---|
| 637 | |
---|
[0595bb7] | 638 | constraint = Constraint() |
---|
| 639 | c_text = mc_widget.txtConstraint.text() |
---|
| 640 | |
---|
[eae226b] | 641 | # widget.params[0] is the parameter we're constraining |
---|
| 642 | constraint.param = mc_widget.params[0] |
---|
[3b3b40b] | 643 | # parameter should have the model name preamble |
---|
[06234fc] | 644 | model_name = self.kernel_module.name |
---|
[3b3b40b] | 645 | # param_used is the parameter we're using in constraining function |
---|
| 646 | param_used = mc_widget.params[1] |
---|
| 647 | # Replace param_used with model_name.param_used |
---|
| 648 | updated_param_used = model_name + "." + param_used |
---|
| 649 | new_func = c_text.replace(param_used, updated_param_used) |
---|
| 650 | constraint.func = new_func |
---|
[d3c0b95] | 651 | # Which row is the constrained parameter in? |
---|
[2d466e4] | 652 | row = self.getRowFromName(constraint.param) |
---|
[eae226b] | 653 | |
---|
[6e58f2f] | 654 | # Create a new item and add the Constraint object as a child |
---|
| 655 | self.addConstraintToRow(constraint=constraint, row=row) |
---|
[eae226b] | 656 | |
---|
[2d466e4] | 657 | def getRowFromName(self, name): |
---|
[eae226b] | 658 | """ |
---|
[d3c0b95] | 659 | Given parameter name get the row number in self._model_model |
---|
[eae226b] | 660 | """ |
---|
| 661 | for row in range(self._model_model.rowCount()): |
---|
| 662 | row_name = self._model_model.item(row).text() |
---|
| 663 | if row_name == name: |
---|
| 664 | return row |
---|
| 665 | return None |
---|
| 666 | |
---|
[2d466e4] | 667 | def getParamNames(self): |
---|
| 668 | """ |
---|
| 669 | Return list of all parameters for the current model |
---|
| 670 | """ |
---|
[00b7ddf0] | 671 | return [self._model_model.item(row).text() |
---|
| 672 | for row in range(self._model_model.rowCount()) |
---|
| 673 | if self.isCheckable(row)] |
---|
[2d466e4] | 674 | |
---|
[eae226b] | 675 | def modifyViewOnRow(self, row, font=None, brush=None): |
---|
| 676 | """ |
---|
| 677 | Chage how the given row of the main model is shown |
---|
| 678 | """ |
---|
| 679 | fields_enabled = False |
---|
| 680 | if font is None: |
---|
| 681 | font = QtGui.QFont() |
---|
| 682 | fields_enabled = True |
---|
| 683 | if brush is None: |
---|
| 684 | brush = QtGui.QBrush() |
---|
| 685 | fields_enabled = True |
---|
[0595bb7] | 686 | self._model_model.blockSignals(True) |
---|
| 687 | # Modify font and foreground of affected rows |
---|
| 688 | for column in range(0, self._model_model.columnCount()): |
---|
| 689 | self._model_model.item(row, column).setForeground(brush) |
---|
| 690 | self._model_model.item(row, column).setFont(font) |
---|
[eae226b] | 691 | self._model_model.item(row, column).setEditable(fields_enabled) |
---|
[0595bb7] | 692 | self._model_model.blockSignals(False) |
---|
| 693 | |
---|
[c5a2722f] | 694 | def addConstraintToRow(self, constraint=None, row=0): |
---|
| 695 | """ |
---|
| 696 | Adds the constraint object to requested row |
---|
| 697 | """ |
---|
| 698 | # Create a new item and add the Constraint object as a child |
---|
[8e2cd79] | 699 | assert isinstance(constraint, Constraint) |
---|
| 700 | assert 0 <= row <= self._model_model.rowCount() |
---|
[00b7ddf0] | 701 | assert self.isCheckable(row) |
---|
[c5a2722f] | 702 | |
---|
| 703 | item = QtGui.QStandardItem() |
---|
| 704 | item.setData(constraint) |
---|
| 705 | self._model_model.item(row, 1).setChild(0, item) |
---|
| 706 | # Set min/max to the value constrained |
---|
| 707 | self.constraintAddedSignal.emit([row]) |
---|
| 708 | # Show visual hints for the constraint |
---|
| 709 | font = QtGui.QFont() |
---|
| 710 | font.setItalic(True) |
---|
| 711 | brush = QtGui.QBrush(QtGui.QColor('blue')) |
---|
| 712 | self.modifyViewOnRow(row, font=font, brush=brush) |
---|
| 713 | self.communicate.statusBarUpdateSignal.emit('Constraint added') |
---|
| 714 | |
---|
[0595bb7] | 715 | def addSimpleConstraint(self): |
---|
[7fd20fc] | 716 | """ |
---|
| 717 | Adds a constraint on a single parameter. |
---|
[2add354] | 718 | """ |
---|
[d3c0b95] | 719 | min_col = self.lstParams.itemDelegate().param_min |
---|
| 720 | max_col = self.lstParams.itemDelegate().param_max |
---|
[0595bb7] | 721 | for row in self.selectedParameters(): |
---|
[00b7ddf0] | 722 | assert(self.isCheckable(row)) |
---|
[0595bb7] | 723 | param = self._model_model.item(row, 0).text() |
---|
| 724 | value = self._model_model.item(row, 1).text() |
---|
[235d766] | 725 | min_t = self._model_model.item(row, min_col).text() |
---|
| 726 | max_t = self._model_model.item(row, max_col).text() |
---|
[eae226b] | 727 | # Create a Constraint object |
---|
[235d766] | 728 | constraint = Constraint(param=param, value=value, min=min_t, max=max_t) |
---|
[eae226b] | 729 | # Create a new item and add the Constraint object as a child |
---|
[0595bb7] | 730 | item = QtGui.QStandardItem() |
---|
| 731 | item.setData(constraint) |
---|
| 732 | self._model_model.item(row, 1).setChild(0, item) |
---|
[235d766] | 733 | # Assumed correctness from the validator |
---|
| 734 | value = float(value) |
---|
| 735 | # BUMPS calculates log(max-min) without any checks, so let's assign minor range |
---|
| 736 | min_v = value - (value/10000.0) |
---|
| 737 | max_v = value + (value/10000.0) |
---|
[eae226b] | 738 | # Set min/max to the value constrained |
---|
[235d766] | 739 | self._model_model.item(row, min_col).setText(str(min_v)) |
---|
| 740 | self._model_model.item(row, max_col).setText(str(max_v)) |
---|
[be8f4b0] | 741 | self.constraintAddedSignal.emit([row]) |
---|
[eae226b] | 742 | # Show visual hints for the constraint |
---|
| 743 | font = QtGui.QFont() |
---|
| 744 | font.setItalic(True) |
---|
| 745 | brush = QtGui.QBrush(QtGui.QColor('blue')) |
---|
| 746 | self.modifyViewOnRow(row, font=font, brush=brush) |
---|
[7fd20fc] | 747 | self.communicate.statusBarUpdateSignal.emit('Constraint added') |
---|
| 748 | |
---|
[eae226b] | 749 | def deleteConstraint(self): |
---|
| 750 | """ |
---|
| 751 | Delete constraints from selected parameters. |
---|
| 752 | """ |
---|
[8e2cd79] | 753 | params = [s.data() for s in self.lstParams.selectionModel().selectedRows() |
---|
[3b3b40b] | 754 | if self.isCheckable(s.row())] |
---|
| 755 | for param in params: |
---|
| 756 | self.deleteConstraintOnParameter(param=param) |
---|
[be8f4b0] | 757 | |
---|
| 758 | def deleteConstraintOnParameter(self, param=None): |
---|
| 759 | """ |
---|
| 760 | Delete the constraint on model parameter 'param' |
---|
| 761 | """ |
---|
[d3c0b95] | 762 | min_col = self.lstParams.itemDelegate().param_min |
---|
| 763 | max_col = self.lstParams.itemDelegate().param_max |
---|
[be8f4b0] | 764 | for row in range(self._model_model.rowCount()): |
---|
[00b7ddf0] | 765 | if not self.isCheckable(row): |
---|
| 766 | continue |
---|
[3b3b40b] | 767 | if not self.rowHasConstraint(row): |
---|
| 768 | continue |
---|
[eae226b] | 769 | # Get the Constraint object from of the model item |
---|
| 770 | item = self._model_model.item(row, 1) |
---|
[3b3b40b] | 771 | constraint = self.getConstraintForRow(row) |
---|
[d3c0b95] | 772 | if constraint is None: |
---|
| 773 | continue |
---|
| 774 | if not isinstance(constraint, Constraint): |
---|
| 775 | continue |
---|
[be8f4b0] | 776 | if param and constraint.param != param: |
---|
| 777 | continue |
---|
| 778 | # Now we got the right row. Delete the constraint and clean up |
---|
[eae226b] | 779 | # Retrieve old values and put them on the model |
---|
| 780 | if constraint.min is not None: |
---|
[d3c0b95] | 781 | self._model_model.item(row, min_col).setText(constraint.min) |
---|
[eae226b] | 782 | if constraint.max is not None: |
---|
[d3c0b95] | 783 | self._model_model.item(row, max_col).setText(constraint.max) |
---|
[eae226b] | 784 | # Remove constraint item |
---|
| 785 | item.removeRow(0) |
---|
[be8f4b0] | 786 | self.constraintAddedSignal.emit([row]) |
---|
[eae226b] | 787 | self.modifyViewOnRow(row) |
---|
[be8f4b0] | 788 | |
---|
[eae226b] | 789 | self.communicate.statusBarUpdateSignal.emit('Constraint removed') |
---|
[be8f4b0] | 790 | |
---|
[d3c0b95] | 791 | def getConstraintForRow(self, row): |
---|
| 792 | """ |
---|
| 793 | For the given row, return its constraint, if any |
---|
| 794 | """ |
---|
[00b7ddf0] | 795 | if self.isCheckable(row): |
---|
[d3c0b95] | 796 | item = self._model_model.item(row, 1) |
---|
[00b7ddf0] | 797 | try: |
---|
| 798 | return item.child(0).data() |
---|
| 799 | except AttributeError: |
---|
| 800 | # return none when no constraints |
---|
| 801 | pass |
---|
| 802 | return None |
---|
[d3c0b95] | 803 | |
---|
[eae226b] | 804 | def rowHasConstraint(self, row): |
---|
| 805 | """ |
---|
| 806 | Finds out if row of the main model has a constraint child |
---|
| 807 | """ |
---|
[00b7ddf0] | 808 | if self.isCheckable(row): |
---|
| 809 | item = self._model_model.item(row, 1) |
---|
| 810 | if item.hasChildren(): |
---|
| 811 | c = item.child(0).data() |
---|
| 812 | if isinstance(c, Constraint): |
---|
| 813 | return True |
---|
[be8f4b0] | 814 | return False |
---|
[116dd4c1] | 815 | |
---|
| 816 | def rowHasActiveConstraint(self, row): |
---|
| 817 | """ |
---|
| 818 | Finds out if row of the main model has an active constraint child |
---|
| 819 | """ |
---|
[00b7ddf0] | 820 | if self.isCheckable(row): |
---|
| 821 | item = self._model_model.item(row, 1) |
---|
| 822 | if item.hasChildren(): |
---|
| 823 | c = item.child(0).data() |
---|
| 824 | if isinstance(c, Constraint) and c.active: |
---|
| 825 | return True |
---|
[235d766] | 826 | return False |
---|
| 827 | |
---|
| 828 | def rowHasActiveComplexConstraint(self, row): |
---|
| 829 | """ |
---|
| 830 | Finds out if row of the main model has an active, nontrivial constraint child |
---|
| 831 | """ |
---|
[00b7ddf0] | 832 | if self.isCheckable(row): |
---|
| 833 | item = self._model_model.item(row, 1) |
---|
| 834 | if item.hasChildren(): |
---|
| 835 | c = item.child(0).data() |
---|
| 836 | if isinstance(c, Constraint) and c.func and c.active: |
---|
| 837 | return True |
---|
[116dd4c1] | 838 | return False |
---|
[eae226b] | 839 | |
---|
[7fd20fc] | 840 | def selectParameters(self): |
---|
| 841 | """ |
---|
[d3c0b95] | 842 | Selected parameter is chosen for fitting |
---|
[7fd20fc] | 843 | """ |
---|
| 844 | status = QtCore.Qt.Checked |
---|
| 845 | self.setParameterSelection(status) |
---|
| 846 | |
---|
| 847 | def deselectParameters(self): |
---|
| 848 | """ |
---|
| 849 | Selected parameters are removed for fitting |
---|
| 850 | """ |
---|
| 851 | status = QtCore.Qt.Unchecked |
---|
| 852 | self.setParameterSelection(status) |
---|
| 853 | |
---|
| 854 | def selectedParameters(self): |
---|
| 855 | """ Returns list of selected (highlighted) parameters """ |
---|
[d3c0b95] | 856 | return [s.row() for s in self.lstParams.selectionModel().selectedRows() |
---|
| 857 | if self.isCheckable(s.row())] |
---|
[7fd20fc] | 858 | |
---|
| 859 | def setParameterSelection(self, status=QtCore.Qt.Unchecked): |
---|
| 860 | """ |
---|
| 861 | Selected parameters are chosen for fitting |
---|
| 862 | """ |
---|
| 863 | # Convert to proper indices and set requested enablement |
---|
| 864 | for row in self.selectedParameters(): |
---|
| 865 | self._model_model.item(row, 0).setCheckState(status) |
---|
[d3c0b95] | 866 | |
---|
| 867 | def getConstraintsForModel(self): |
---|
| 868 | """ |
---|
| 869 | Return a list of tuples. Each tuple contains constraints mapped as |
---|
| 870 | ('constrained parameter', 'function to constrain') |
---|
| 871 | e.g. [('sld','5*sld_solvent')] |
---|
| 872 | """ |
---|
| 873 | param_number = self._model_model.rowCount() |
---|
| 874 | params = [(self._model_model.item(s, 0).text(), |
---|
[c5a2722f] | 875 | self._model_model.item(s, 1).child(0).data().func) |
---|
[116dd4c1] | 876 | for s in range(param_number) if self.rowHasActiveConstraint(s)] |
---|
[d3c0b95] | 877 | return params |
---|
[7fd20fc] | 878 | |
---|
[235d766] | 879 | def getComplexConstraintsForModel(self): |
---|
| 880 | """ |
---|
| 881 | Return a list of tuples. Each tuple contains constraints mapped as |
---|
| 882 | ('constrained parameter', 'function to constrain') |
---|
[06234fc] | 883 | e.g. [('sld','5*M2.sld_solvent')]. |
---|
[235d766] | 884 | Only for constraints with defined VALUE |
---|
| 885 | """ |
---|
| 886 | param_number = self._model_model.rowCount() |
---|
| 887 | params = [(self._model_model.item(s, 0).text(), |
---|
| 888 | self._model_model.item(s, 1).child(0).data().func) |
---|
| 889 | for s in range(param_number) if self.rowHasActiveComplexConstraint(s)] |
---|
| 890 | return params |
---|
| 891 | |
---|
[ba01ad1] | 892 | def getConstraintObjectsForModel(self): |
---|
| 893 | """ |
---|
| 894 | Returns Constraint objects present on the whole model |
---|
| 895 | """ |
---|
| 896 | param_number = self._model_model.rowCount() |
---|
| 897 | constraints = [self._model_model.item(s, 1).child(0).data() |
---|
| 898 | for s in range(param_number) if self.rowHasConstraint(s)] |
---|
| 899 | |
---|
| 900 | return constraints |
---|
| 901 | |
---|
[3b3b40b] | 902 | def getConstraintsForFitting(self): |
---|
| 903 | """ |
---|
| 904 | Return a list of constraints in format ready for use in fiting |
---|
| 905 | """ |
---|
| 906 | # Get constraints |
---|
| 907 | constraints = self.getComplexConstraintsForModel() |
---|
| 908 | # See if there are any constraints across models |
---|
| 909 | multi_constraints = [cons for cons in constraints if self.isConstraintMultimodel(cons[1])] |
---|
| 910 | |
---|
| 911 | if multi_constraints: |
---|
| 912 | # Let users choose what to do |
---|
| 913 | msg = "The current fit contains constraints relying on other fit pages.\n" |
---|
| 914 | msg += "Parameters with those constraints are:\n" +\ |
---|
| 915 | '\n'.join([cons[0] for cons in multi_constraints]) |
---|
| 916 | msg += "\n\nWould you like to remove these constraints or cancel fitting?" |
---|
| 917 | msgbox = QtWidgets.QMessageBox(self) |
---|
| 918 | msgbox.setIcon(QtWidgets.QMessageBox.Warning) |
---|
| 919 | msgbox.setText(msg) |
---|
| 920 | msgbox.setWindowTitle("Existing Constraints") |
---|
| 921 | # custom buttons |
---|
| 922 | button_remove = QtWidgets.QPushButton("Remove") |
---|
| 923 | msgbox.addButton(button_remove, QtWidgets.QMessageBox.YesRole) |
---|
| 924 | button_cancel = QtWidgets.QPushButton("Cancel") |
---|
| 925 | msgbox.addButton(button_cancel, QtWidgets.QMessageBox.RejectRole) |
---|
| 926 | retval = msgbox.exec_() |
---|
| 927 | if retval == QtWidgets.QMessageBox.RejectRole: |
---|
| 928 | # cancel fit |
---|
| 929 | raise ValueError("Fitting cancelled") |
---|
| 930 | else: |
---|
| 931 | # remove constraint |
---|
| 932 | for cons in multi_constraints: |
---|
| 933 | self.deleteConstraintOnParameter(param=cons[0]) |
---|
| 934 | # re-read the constraints |
---|
| 935 | constraints = self.getComplexConstraintsForModel() |
---|
| 936 | |
---|
| 937 | return constraints |
---|
| 938 | |
---|
[7fd20fc] | 939 | def showModelDescription(self): |
---|
| 940 | """ |
---|
| 941 | Creates a window with model description, when right clicked in the treeview |
---|
[2add354] | 942 | """ |
---|
| 943 | msg = 'Model description:\n' |
---|
| 944 | if self.kernel_module is not None: |
---|
| 945 | if str(self.kernel_module.description).rstrip().lstrip() == '': |
---|
| 946 | msg += "Sorry, no information is available for this model." |
---|
| 947 | else: |
---|
| 948 | msg += self.kernel_module.description + '\n' |
---|
| 949 | else: |
---|
| 950 | msg += "You must select a model to get information on this" |
---|
| 951 | |
---|
[4992ff2] | 952 | menu = QtWidgets.QMenu() |
---|
| 953 | label = QtWidgets.QLabel(msg) |
---|
[d6b8a1d] | 954 | action = QtWidgets.QWidgetAction(self) |
---|
[672b8ab] | 955 | action.setDefaultWidget(label) |
---|
| 956 | menu.addAction(action) |
---|
[7fd20fc] | 957 | return menu |
---|
[2add354] | 958 | |
---|
[0268aed] | 959 | def onSelectModel(self): |
---|
[cbcdd2c] | 960 | """ |
---|
[0268aed] | 961 | Respond to select Model from list event |
---|
[cbcdd2c] | 962 | """ |
---|
[d6b8a1d] | 963 | model = self.cbModel.currentText() |
---|
[0268aed] | 964 | |
---|
[b3e8629] | 965 | # empty combobox forced to be read |
---|
| 966 | if not model: |
---|
| 967 | return |
---|
[0268aed] | 968 | # Reset structure factor |
---|
| 969 | self.cbStructureFactor.setCurrentIndex(0) |
---|
| 970 | |
---|
[f182f93] | 971 | # Reset parameters to fit |
---|
[6dbff18] | 972 | self.resetParametersToFit() |
---|
[d7ff531] | 973 | self.has_error_column = False |
---|
[aca8418] | 974 | self.has_poly_error_column = False |
---|
[f182f93] | 975 | |
---|
[fd1ae6d1] | 976 | self.respondToModelStructure(model=model, structure_factor=None) |
---|
| 977 | |
---|
[ee18d33] | 978 | def onSelectBatchFilename(self, data_index): |
---|
| 979 | """ |
---|
| 980 | Update the logic based on the selected file in batch fitting |
---|
| 981 | """ |
---|
[d4dac80] | 982 | self.data_index = data_index |
---|
[ee18d33] | 983 | self.updateQRange() |
---|
| 984 | |
---|
[fd1ae6d1] | 985 | def onSelectStructureFactor(self): |
---|
| 986 | """ |
---|
| 987 | Select Structure Factor from list |
---|
| 988 | """ |
---|
| 989 | model = str(self.cbModel.currentText()) |
---|
| 990 | category = str(self.cbCategory.currentText()) |
---|
| 991 | structure = str(self.cbStructureFactor.currentText()) |
---|
| 992 | if category == CATEGORY_STRUCTURE: |
---|
| 993 | model = None |
---|
[e11106e] | 994 | |
---|
| 995 | # Reset parameters to fit |
---|
[6dbff18] | 996 | self.resetParametersToFit() |
---|
[e11106e] | 997 | self.has_error_column = False |
---|
| 998 | self.has_poly_error_column = False |
---|
| 999 | |
---|
[fd1ae6d1] | 1000 | self.respondToModelStructure(model=model, structure_factor=structure) |
---|
| 1001 | |
---|
[6dbff18] | 1002 | def resetParametersToFit(self): |
---|
| 1003 | """ |
---|
| 1004 | Clears the list of parameters to be fitted |
---|
| 1005 | """ |
---|
| 1006 | self.main_params_to_fit = [] |
---|
| 1007 | self.poly_params_to_fit = [] |
---|
| 1008 | self.magnet_params_to_fit = [] |
---|
| 1009 | |
---|
[3b3b40b] | 1010 | def onCustomModelChange(self): |
---|
| 1011 | """ |
---|
| 1012 | Reload the custom model combobox |
---|
| 1013 | """ |
---|
| 1014 | self.custom_models = self.customModels() |
---|
| 1015 | self.readCustomCategoryInfo() |
---|
| 1016 | # See if we need to update the combo in-place |
---|
| 1017 | if self.cbCategory.currentText() != CATEGORY_CUSTOM: return |
---|
| 1018 | |
---|
| 1019 | current_text = self.cbModel.currentText() |
---|
| 1020 | self.cbModel.blockSignals(True) |
---|
| 1021 | self.cbModel.clear() |
---|
| 1022 | self.cbModel.blockSignals(False) |
---|
| 1023 | self.enableModelCombo() |
---|
| 1024 | self.disableStructureCombo() |
---|
| 1025 | # Retrieve the list of models |
---|
| 1026 | model_list = self.master_category_dict[CATEGORY_CUSTOM] |
---|
| 1027 | # Populate the models combobox |
---|
| 1028 | self.cbModel.addItems(sorted([model for (model, _) in model_list])) |
---|
| 1029 | new_index = self.cbModel.findText(current_text) |
---|
| 1030 | if new_index != -1: |
---|
| 1031 | self.cbModel.setCurrentIndex(self.cbModel.findText(current_text)) |
---|
| 1032 | |
---|
| 1033 | def onSelectionChanged(self): |
---|
| 1034 | """ |
---|
| 1035 | React to parameter selection |
---|
| 1036 | """ |
---|
| 1037 | rows = self.lstParams.selectionModel().selectedRows() |
---|
| 1038 | # Clean previous messages |
---|
| 1039 | self.communicate.statusBarUpdateSignal.emit("") |
---|
| 1040 | if len(rows) == 1: |
---|
| 1041 | # Show constraint, if present |
---|
| 1042 | row = rows[0].row() |
---|
| 1043 | if self.rowHasConstraint(row): |
---|
| 1044 | func = self.getConstraintForRow(row).func |
---|
| 1045 | if func is not None: |
---|
| 1046 | self.communicate.statusBarUpdateSignal.emit("Active constrain: "+func) |
---|
| 1047 | |
---|
[47d7d2d] | 1048 | def replaceConstraintName(self, old_name, new_name=""): |
---|
| 1049 | """ |
---|
| 1050 | Replace names of models in defined constraints |
---|
| 1051 | """ |
---|
| 1052 | param_number = self._model_model.rowCount() |
---|
| 1053 | # loop over parameters |
---|
| 1054 | for row in range(param_number): |
---|
| 1055 | if self.rowHasConstraint(row): |
---|
| 1056 | func = self._model_model.item(row, 1).child(0).data().func |
---|
| 1057 | if old_name in func: |
---|
| 1058 | new_func = func.replace(old_name, new_name) |
---|
| 1059 | self._model_model.item(row, 1).child(0).data().func = new_func |
---|
| 1060 | |
---|
[3b3b40b] | 1061 | def isConstraintMultimodel(self, constraint): |
---|
| 1062 | """ |
---|
| 1063 | Check if the constraint function text contains current model name |
---|
| 1064 | """ |
---|
| 1065 | current_model_name = self.kernel_module.name |
---|
| 1066 | if current_model_name in constraint: |
---|
| 1067 | return False |
---|
| 1068 | else: |
---|
| 1069 | return True |
---|
| 1070 | |
---|
[9c0ce68] | 1071 | def updateData(self): |
---|
| 1072 | """ |
---|
| 1073 | Helper function for recalculation of data used in plotting |
---|
| 1074 | """ |
---|
| 1075 | # Update the chart |
---|
[0268aed] | 1076 | if self.data_is_loaded: |
---|
[d48cc19] | 1077 | self.cmdPlot.setText("Show Plot") |
---|
[0268aed] | 1078 | self.calculateQGridForModel() |
---|
| 1079 | else: |
---|
[d48cc19] | 1080 | self.cmdPlot.setText("Calculate") |
---|
[0268aed] | 1081 | # Create default datasets if no data passed |
---|
| 1082 | self.createDefaultDataset() |
---|
| 1083 | |
---|
[9c0ce68] | 1084 | def respondToModelStructure(self, model=None, structure_factor=None): |
---|
| 1085 | # Set enablement on calculate/plot |
---|
| 1086 | self.cmdPlot.setEnabled(True) |
---|
| 1087 | |
---|
| 1088 | # kernel parameters -> model_model |
---|
| 1089 | self.SASModelToQModel(model, structure_factor) |
---|
| 1090 | |
---|
| 1091 | # Update plot |
---|
| 1092 | self.updateData() |
---|
| 1093 | |
---|
[6011788] | 1094 | # Update state stack |
---|
[00b3b40] | 1095 | self.updateUndo() |
---|
[2add354] | 1096 | |
---|
[be8f4b0] | 1097 | # Let others know |
---|
| 1098 | self.newModelSignal.emit() |
---|
| 1099 | |
---|
[cd31251] | 1100 | def onSelectCategory(self): |
---|
[60af928] | 1101 | """ |
---|
| 1102 | Select Category from list |
---|
| 1103 | """ |
---|
[d6b8a1d] | 1104 | category = self.cbCategory.currentText() |
---|
[86f88d1] | 1105 | # Check if the user chose "Choose category entry" |
---|
[4d457df] | 1106 | if category == CATEGORY_DEFAULT: |
---|
[86f88d1] | 1107 | # if the previous category was not the default, keep it. |
---|
| 1108 | # Otherwise, just return |
---|
| 1109 | if self._previous_category_index != 0: |
---|
[351b53e] | 1110 | # We need to block signals, or else state changes on perceived unchanged conditions |
---|
| 1111 | self.cbCategory.blockSignals(True) |
---|
[86f88d1] | 1112 | self.cbCategory.setCurrentIndex(self._previous_category_index) |
---|
[351b53e] | 1113 | self.cbCategory.blockSignals(False) |
---|
[86f88d1] | 1114 | return |
---|
| 1115 | |
---|
[4d457df] | 1116 | if category == CATEGORY_STRUCTURE: |
---|
[6f7f652] | 1117 | self.disableModelCombo() |
---|
| 1118 | self.enableStructureCombo() |
---|
[29eb947] | 1119 | self._model_model.clear() |
---|
[6f7f652] | 1120 | return |
---|
[8b480d27] | 1121 | |
---|
[cbcdd2c] | 1122 | # Safely clear and enable the model combo |
---|
[6f7f652] | 1123 | self.cbModel.blockSignals(True) |
---|
| 1124 | self.cbModel.clear() |
---|
| 1125 | self.cbModel.blockSignals(False) |
---|
| 1126 | self.enableModelCombo() |
---|
| 1127 | self.disableStructureCombo() |
---|
| 1128 | |
---|
[86f88d1] | 1129 | self._previous_category_index = self.cbCategory.currentIndex() |
---|
[cbcdd2c] | 1130 | # Retrieve the list of models |
---|
[4d457df] | 1131 | model_list = self.master_category_dict[category] |
---|
[cbcdd2c] | 1132 | # Populate the models combobox |
---|
[b1e36a3] | 1133 | self.cbModel.addItems(sorted([model for (model, _) in model_list])) |
---|
[4d457df] | 1134 | |
---|
[0268aed] | 1135 | def onPolyModelChange(self, item): |
---|
| 1136 | """ |
---|
| 1137 | Callback method for updating the main model and sasmodel |
---|
| 1138 | parameters with the GUI values in the polydispersity view |
---|
| 1139 | """ |
---|
| 1140 | model_column = item.column() |
---|
| 1141 | model_row = item.row() |
---|
| 1142 | name_index = self._poly_model.index(model_row, 0) |
---|
[7fb471d] | 1143 | parameter_name = str(name_index.data()).lower() # "distribution of sld" etc. |
---|
[c1e380e] | 1144 | if "distribution of" in parameter_name: |
---|
[358b39d] | 1145 | # just the last word |
---|
| 1146 | parameter_name = parameter_name.rsplit()[-1] |
---|
[c1e380e] | 1147 | |
---|
[906e0c7] | 1148 | delegate = self.lstPoly.itemDelegate() |
---|
| 1149 | |
---|
[06b0138] | 1150 | # Extract changed value. |
---|
[906e0c7] | 1151 | if model_column == delegate.poly_parameter: |
---|
[00b3b40] | 1152 | # Is the parameter checked for fitting? |
---|
[0268aed] | 1153 | value = item.checkState() |
---|
[1643d8ed] | 1154 | parameter_name = parameter_name + '.width' |
---|
[c1e380e] | 1155 | if value == QtCore.Qt.Checked: |
---|
[6dbff18] | 1156 | self.poly_params_to_fit.append(parameter_name) |
---|
[c1e380e] | 1157 | else: |
---|
[6dbff18] | 1158 | if parameter_name in self.poly_params_to_fit: |
---|
| 1159 | self.poly_params_to_fit.remove(parameter_name) |
---|
| 1160 | self.cmdFit.setEnabled(self.haveParamsToFit()) |
---|
[906e0c7] | 1161 | |
---|
| 1162 | elif model_column in [delegate.poly_min, delegate.poly_max]: |
---|
[aca8418] | 1163 | try: |
---|
[fbfc488] | 1164 | value = GuiUtils.toDouble(item.text()) |
---|
[0261bc1] | 1165 | except TypeError: |
---|
[aca8418] | 1166 | # Can't be converted properly, bring back the old value and exit |
---|
| 1167 | return |
---|
| 1168 | |
---|
| 1169 | current_details = self.kernel_module.details[parameter_name] |
---|
[906e0c7] | 1170 | if self.has_poly_error_column: |
---|
| 1171 | # err column changes the indexing |
---|
| 1172 | current_details[model_column-2] = value |
---|
| 1173 | else: |
---|
| 1174 | current_details[model_column-1] = value |
---|
| 1175 | |
---|
| 1176 | elif model_column == delegate.poly_function: |
---|
[919d47c] | 1177 | # name of the function - just pass |
---|
[906e0c7] | 1178 | pass |
---|
| 1179 | |
---|
[0268aed] | 1180 | else: |
---|
| 1181 | try: |
---|
[fbfc488] | 1182 | value = GuiUtils.toDouble(item.text()) |
---|
[0261bc1] | 1183 | except TypeError: |
---|
[0268aed] | 1184 | # Can't be converted properly, bring back the old value and exit |
---|
| 1185 | return |
---|
| 1186 | |
---|
[aca8418] | 1187 | # Update the sasmodel |
---|
| 1188 | # PD[ratio] -> width, npts -> npts, nsigs -> nsigmas |
---|
[906e0c7] | 1189 | self.kernel_module.setParam(parameter_name + '.' + delegate.columnDict()[model_column], value) |
---|
[0268aed] | 1190 | |
---|
[9c0ce68] | 1191 | # Update plot |
---|
| 1192 | self.updateData() |
---|
| 1193 | |
---|
[906e0c7] | 1194 | # update in param model |
---|
| 1195 | if model_column in [delegate.poly_pd, delegate.poly_error, delegate.poly_min, delegate.poly_max]: |
---|
| 1196 | row = self.getRowFromName(parameter_name) |
---|
| 1197 | param_item = self._model_model.item(row) |
---|
| 1198 | param_item.child(0).child(0, model_column).setText(item.text()) |
---|
| 1199 | |
---|
[b00414d] | 1200 | def onMagnetModelChange(self, item): |
---|
| 1201 | """ |
---|
| 1202 | Callback method for updating the sasmodel magnetic parameters with the GUI values |
---|
| 1203 | """ |
---|
| 1204 | model_column = item.column() |
---|
| 1205 | model_row = item.row() |
---|
| 1206 | name_index = self._magnet_model.index(model_row, 0) |
---|
[fbfc488] | 1207 | parameter_name = str(self._magnet_model.data(name_index)) |
---|
[b00414d] | 1208 | |
---|
| 1209 | if model_column == 0: |
---|
| 1210 | value = item.checkState() |
---|
| 1211 | if value == QtCore.Qt.Checked: |
---|
[6dbff18] | 1212 | self.magnet_params_to_fit.append(parameter_name) |
---|
[b00414d] | 1213 | else: |
---|
[6dbff18] | 1214 | if parameter_name in self.magnet_params_to_fit: |
---|
| 1215 | self.magnet_params_to_fit.remove(parameter_name) |
---|
| 1216 | self.cmdFit.setEnabled(self.haveParamsToFit()) |
---|
[b00414d] | 1217 | # Update state stack |
---|
| 1218 | self.updateUndo() |
---|
| 1219 | return |
---|
| 1220 | |
---|
| 1221 | # Extract changed value. |
---|
| 1222 | try: |
---|
[fbfc488] | 1223 | value = GuiUtils.toDouble(item.text()) |
---|
[0261bc1] | 1224 | except TypeError: |
---|
[b00414d] | 1225 | # Unparsable field |
---|
| 1226 | return |
---|
| 1227 | |
---|
[fbfc488] | 1228 | property_index = self._magnet_model.headerData(1, model_column)-1 # Value, min, max, etc. |
---|
[b00414d] | 1229 | |
---|
| 1230 | # Update the parameter value - note: this supports +/-inf as well |
---|
| 1231 | self.kernel_module.params[parameter_name] = value |
---|
| 1232 | |
---|
| 1233 | # min/max to be changed in self.kernel_module.details[parameter_name] = ['Ang', 0.0, inf] |
---|
| 1234 | self.kernel_module.details[parameter_name][property_index] = value |
---|
| 1235 | |
---|
| 1236 | # Force the chart update when actual parameters changed |
---|
| 1237 | if model_column == 1: |
---|
| 1238 | self.recalculatePlotData() |
---|
| 1239 | |
---|
| 1240 | # Update state stack |
---|
| 1241 | self.updateUndo() |
---|
| 1242 | |
---|
[2add354] | 1243 | def onHelp(self): |
---|
| 1244 | """ |
---|
| 1245 | Show the "Fitting" section of help |
---|
| 1246 | """ |
---|
[aed0532] | 1247 | tree_location = "/user/qtgui/Perspectives/Fitting/" |
---|
[70080a0] | 1248 | |
---|
| 1249 | # Actual file will depend on the current tab |
---|
| 1250 | tab_id = self.tabFitting.currentIndex() |
---|
| 1251 | helpfile = "fitting.html" |
---|
| 1252 | if tab_id == 0: |
---|
| 1253 | helpfile = "fitting_help.html" |
---|
| 1254 | elif tab_id == 1: |
---|
| 1255 | helpfile = "residuals_help.html" |
---|
| 1256 | elif tab_id == 2: |
---|
[e90988c] | 1257 | helpfile = "resolution.html" |
---|
[70080a0] | 1258 | elif tab_id == 3: |
---|
[e90988c] | 1259 | helpfile = "pd/polydispersity.html" |
---|
[70080a0] | 1260 | elif tab_id == 4: |
---|
[e90988c] | 1261 | helpfile = "magnetism/magnetism.html" |
---|
[70080a0] | 1262 | help_location = tree_location + helpfile |
---|
[d6b8a1d] | 1263 | |
---|
[e90988c] | 1264 | self.showHelp(help_location) |
---|
| 1265 | |
---|
| 1266 | def showHelp(self, url): |
---|
| 1267 | """ |
---|
| 1268 | Calls parent's method for opening an HTML page |
---|
| 1269 | """ |
---|
| 1270 | self.parent.showHelp(url) |
---|
[2add354] | 1271 | |
---|
[6ff2eb3] | 1272 | def onDisplayMagneticAngles(self): |
---|
| 1273 | """ |
---|
| 1274 | Display a simple image showing direction of magnetic angles |
---|
| 1275 | """ |
---|
| 1276 | self.magneticAnglesWidget.show() |
---|
| 1277 | |
---|
[0268aed] | 1278 | def onFit(self): |
---|
| 1279 | """ |
---|
| 1280 | Perform fitting on the current data |
---|
| 1281 | """ |
---|
[ded5e77] | 1282 | if self.fit_started: |
---|
| 1283 | self.stopFit() |
---|
| 1284 | return |
---|
| 1285 | |
---|
[116dd4c1] | 1286 | # initialize fitter constants |
---|
[f182f93] | 1287 | fit_id = 0 |
---|
| 1288 | handler = None |
---|
| 1289 | batch_inputs = {} |
---|
| 1290 | batch_outputs = {} |
---|
| 1291 | #--------------------------------- |
---|
[14ec91c5] | 1292 | if LocalConfig.USING_TWISTED: |
---|
[7adc2a8] | 1293 | handler = None |
---|
| 1294 | updater = None |
---|
| 1295 | else: |
---|
| 1296 | handler = ConsoleUpdate(parent=self.parent, |
---|
| 1297 | manager=self, |
---|
| 1298 | improvement_delta=0.1) |
---|
| 1299 | updater = handler.update_fit |
---|
[f182f93] | 1300 | |
---|
[116dd4c1] | 1301 | # Prepare the fitter object |
---|
[c6343a5] | 1302 | try: |
---|
| 1303 | fitters, _ = self.prepareFitters() |
---|
| 1304 | except ValueError as ex: |
---|
| 1305 | # This should not happen! GUI explicitly forbids this situation |
---|
[3b3b40b] | 1306 | self.communicate.statusBarUpdateSignal.emit(str(ex)) |
---|
[c6343a5] | 1307 | return |
---|
[f182f93] | 1308 | |
---|
[d4dac80] | 1309 | # keep local copy of kernel parameters, as they will change during the update |
---|
| 1310 | self.kernel_module_copy = copy.deepcopy(self.kernel_module) |
---|
| 1311 | |
---|
[f182f93] | 1312 | # Create the fitting thread, based on the fitter |
---|
[3b3b40b] | 1313 | completefn = self.batchFittingCompleted if self.is_batch_fitting else self.fittingCompleted |
---|
[ee18d33] | 1314 | |
---|
[ded5e77] | 1315 | self.calc_fit = FitThread(handler=handler, |
---|
[116dd4c1] | 1316 | fn=fitters, |
---|
| 1317 | batch_inputs=batch_inputs, |
---|
| 1318 | batch_outputs=batch_outputs, |
---|
| 1319 | page_id=[[self.page_id]], |
---|
| 1320 | updatefn=updater, |
---|
[91ad45c] | 1321 | completefn=completefn, |
---|
| 1322 | reset_flag=self.is_chain_fitting) |
---|
[7adc2a8] | 1323 | |
---|
[14ec91c5] | 1324 | if LocalConfig.USING_TWISTED: |
---|
[7adc2a8] | 1325 | # start the trhrhread with twisted |
---|
[ded5e77] | 1326 | calc_thread = threads.deferToThread(self.calc_fit.compute) |
---|
[14ec91c5] | 1327 | calc_thread.addCallback(completefn) |
---|
[7adc2a8] | 1328 | calc_thread.addErrback(self.fitFailed) |
---|
| 1329 | else: |
---|
| 1330 | # Use the old python threads + Queue |
---|
[ded5e77] | 1331 | self.calc_fit.queue() |
---|
| 1332 | self.calc_fit.ready(2.5) |
---|
[f182f93] | 1333 | |
---|
[d7ff531] | 1334 | self.communicate.statusBarUpdateSignal.emit('Fitting started...') |
---|
[ded5e77] | 1335 | self.fit_started = True |
---|
[14ec91c5] | 1336 | # Disable some elements |
---|
| 1337 | self.setFittingStarted() |
---|
[0268aed] | 1338 | |
---|
[ded5e77] | 1339 | def stopFit(self): |
---|
| 1340 | """ |
---|
| 1341 | Attempt to stop the fitting thread |
---|
| 1342 | """ |
---|
| 1343 | if self.calc_fit is None or not self.calc_fit.isrunning(): |
---|
| 1344 | return |
---|
| 1345 | self.calc_fit.stop() |
---|
| 1346 | #self.fit_started=False |
---|
| 1347 | #re-enable the Fit button |
---|
| 1348 | self.setFittingStopped() |
---|
| 1349 | |
---|
| 1350 | msg = "Fitting cancelled." |
---|
| 1351 | self.communicate.statusBarUpdateSignal.emit(msg) |
---|
| 1352 | |
---|
[f182f93] | 1353 | def updateFit(self): |
---|
| 1354 | """ |
---|
| 1355 | """ |
---|
[b3e8629] | 1356 | print("UPDATE FIT") |
---|
[0268aed] | 1357 | pass |
---|
| 1358 | |
---|
[02ddfb4] | 1359 | def fitFailed(self, reason): |
---|
| 1360 | """ |
---|
| 1361 | """ |
---|
[ded5e77] | 1362 | self.setFittingStopped() |
---|
| 1363 | msg = "Fitting failed with: "+ str(reason) |
---|
| 1364 | self.communicate.statusBarUpdateSignal.emit(msg) |
---|
[02ddfb4] | 1365 | |
---|
[3b3b40b] | 1366 | def batchFittingCompleted(self, result): |
---|
| 1367 | """ |
---|
| 1368 | Send the finish message from calculate threads to main thread |
---|
| 1369 | """ |
---|
[a2cc8b97] | 1370 | if result is None: |
---|
| 1371 | result = tuple() |
---|
[3b3b40b] | 1372 | self.batchFittingFinishedSignal.emit(result) |
---|
| 1373 | |
---|
[ee18d33] | 1374 | def batchFitComplete(self, result): |
---|
| 1375 | """ |
---|
| 1376 | Receive and display batch fitting results |
---|
| 1377 | """ |
---|
| 1378 | #re-enable the Fit button |
---|
[14ec91c5] | 1379 | self.setFittingStopped() |
---|
[d4dac80] | 1380 | |
---|
[a2cc8b97] | 1381 | if len(result) == 0: |
---|
[d4dac80] | 1382 | msg = "Fitting failed." |
---|
| 1383 | self.communicate.statusBarUpdateSignal.emit(msg) |
---|
| 1384 | return |
---|
| 1385 | |
---|
[3b3b40b] | 1386 | # Show the grid panel |
---|
[d4dac80] | 1387 | self.communicate.sendDataToGridSignal.emit(result[0]) |
---|
| 1388 | |
---|
| 1389 | elapsed = result[1] |
---|
| 1390 | msg = "Fitting completed successfully in: %s s.\n" % GuiUtils.formatNumber(elapsed) |
---|
| 1391 | self.communicate.statusBarUpdateSignal.emit(msg) |
---|
| 1392 | |
---|
| 1393 | # Run over the list of results and update the items |
---|
| 1394 | for res_index, res_list in enumerate(result[0]): |
---|
| 1395 | # results |
---|
| 1396 | res = res_list[0] |
---|
| 1397 | param_dict = self.paramDictFromResults(res) |
---|
| 1398 | |
---|
| 1399 | # create local kernel_module |
---|
| 1400 | kernel_module = FittingUtilities.updateKernelWithResults(self.kernel_module, param_dict) |
---|
| 1401 | # pull out current data |
---|
| 1402 | data = self._logic[res_index].data |
---|
| 1403 | |
---|
| 1404 | # Switch indexes |
---|
| 1405 | self.onSelectBatchFilename(res_index) |
---|
| 1406 | |
---|
| 1407 | method = self.complete1D if isinstance(self.data, Data1D) else self.complete2D |
---|
| 1408 | self.calculateQGridForModelExt(data=data, model=kernel_module, completefn=method, use_threads=False) |
---|
| 1409 | |
---|
| 1410 | # Restore original kernel_module, so subsequent fits on the same model don't pick up the new params |
---|
| 1411 | if self.kernel_module is not None: |
---|
| 1412 | self.kernel_module = copy.deepcopy(self.kernel_module_copy) |
---|
| 1413 | |
---|
| 1414 | def paramDictFromResults(self, results): |
---|
| 1415 | """ |
---|
| 1416 | Given the fit results structure, pull out optimized parameters and return them as nicely |
---|
| 1417 | formatted dict |
---|
| 1418 | """ |
---|
| 1419 | if results.fitness is None or \ |
---|
| 1420 | not np.isfinite(results.fitness) or \ |
---|
| 1421 | np.any(results.pvec is None) or \ |
---|
| 1422 | not np.all(np.isfinite(results.pvec)): |
---|
| 1423 | msg = "Fitting did not converge!" |
---|
| 1424 | self.communicate.statusBarUpdateSignal.emit(msg) |
---|
| 1425 | msg += results.mesg |
---|
| 1426 | logging.error(msg) |
---|
| 1427 | return |
---|
| 1428 | |
---|
| 1429 | param_list = results.param_list # ['radius', 'radius.width'] |
---|
| 1430 | param_values = results.pvec # array([ 0.36221662, 0.0146783 ]) |
---|
| 1431 | param_stderr = results.stderr # array([ 1.71293015, 1.71294233]) |
---|
| 1432 | params_and_errors = list(zip(param_values, param_stderr)) |
---|
| 1433 | param_dict = dict(zip(param_list, params_and_errors)) |
---|
| 1434 | |
---|
| 1435 | return param_dict |
---|
[3b3b40b] | 1436 | |
---|
| 1437 | def fittingCompleted(self, result): |
---|
| 1438 | """ |
---|
| 1439 | Send the finish message from calculate threads to main thread |
---|
| 1440 | """ |
---|
[a2cc8b97] | 1441 | if result is None: |
---|
| 1442 | result = tuple() |
---|
[3b3b40b] | 1443 | self.fittingFinishedSignal.emit(result) |
---|
[ee18d33] | 1444 | |
---|
[f182f93] | 1445 | def fitComplete(self, result): |
---|
| 1446 | """ |
---|
| 1447 | Receive and display fitting results |
---|
| 1448 | "result" is a tuple of actual result list and the fit time in seconds |
---|
| 1449 | """ |
---|
| 1450 | #re-enable the Fit button |
---|
[14ec91c5] | 1451 | self.setFittingStopped() |
---|
[d7ff531] | 1452 | |
---|
[a2cc8b97] | 1453 | if len(result) == 0: |
---|
[3b3b40b] | 1454 | msg = "Fitting failed." |
---|
[06234fc] | 1455 | self.communicate.statusBarUpdateSignal.emit(msg) |
---|
| 1456 | return |
---|
[d7ff531] | 1457 | |
---|
[ee18d33] | 1458 | res_list = result[0][0] |
---|
[f182f93] | 1459 | res = res_list[0] |
---|
[d4dac80] | 1460 | self.chi2 = res.fitness |
---|
| 1461 | param_dict = self.paramDictFromResults(res) |
---|
[f182f93] | 1462 | |
---|
[14acf92] | 1463 | if param_dict is None: |
---|
| 1464 | return |
---|
| 1465 | |
---|
[f182f93] | 1466 | elapsed = result[1] |
---|
[ded5e77] | 1467 | if self.calc_fit._interrupting: |
---|
| 1468 | msg = "Fitting cancelled by user after: %s s." % GuiUtils.formatNumber(elapsed) |
---|
| 1469 | logging.warning("\n"+msg+"\n") |
---|
| 1470 | else: |
---|
| 1471 | msg = "Fitting completed successfully in: %s s." % GuiUtils.formatNumber(elapsed) |
---|
[f182f93] | 1472 | self.communicate.statusBarUpdateSignal.emit(msg) |
---|
| 1473 | |
---|
| 1474 | # Dictionary of fitted parameter: value, error |
---|
| 1475 | # e.g. param_dic = {"sld":(1.703, 0.0034), "length":(33.455, -0.0983)} |
---|
| 1476 | self.updateModelFromList(param_dict) |
---|
| 1477 | |
---|
[aca8418] | 1478 | self.updatePolyModelFromList(param_dict) |
---|
| 1479 | |
---|
[b00414d] | 1480 | self.updateMagnetModelFromList(param_dict) |
---|
| 1481 | |
---|
[d7ff531] | 1482 | # update charts |
---|
| 1483 | self.onPlot() |
---|
| 1484 | |
---|
[f182f93] | 1485 | # Read only value - we can get away by just printing it here |
---|
[2add354] | 1486 | chi2_repr = GuiUtils.formatNumber(self.chi2, high=True) |
---|
[f182f93] | 1487 | self.lblChi2Value.setText(chi2_repr) |
---|
| 1488 | |
---|
[116dd4c1] | 1489 | def prepareFitters(self, fitter=None, fit_id=0): |
---|
| 1490 | """ |
---|
| 1491 | Prepare the Fitter object for use in fitting |
---|
| 1492 | """ |
---|
| 1493 | # fitter = None -> single/batch fitting |
---|
| 1494 | # fitter = Fit() -> simultaneous fitting |
---|
| 1495 | |
---|
| 1496 | # Data going in |
---|
| 1497 | data = self.logic.data |
---|
| 1498 | model = self.kernel_module |
---|
| 1499 | qmin = self.q_range_min |
---|
| 1500 | qmax = self.q_range_max |
---|
[6dbff18] | 1501 | |
---|
| 1502 | params_to_fit = self.main_params_to_fit |
---|
| 1503 | if self.chkPolydispersity.isChecked(): |
---|
| 1504 | params_to_fit += self.poly_params_to_fit |
---|
| 1505 | if self.chkMagnetism.isChecked(): |
---|
| 1506 | params_to_fit += self.magnet_params_to_fit |
---|
[8e2cd79] | 1507 | if not params_to_fit: |
---|
[c6343a5] | 1508 | raise ValueError('Fitting requires at least one parameter to optimize.') |
---|
[116dd4c1] | 1509 | |
---|
| 1510 | # Potential smearing added |
---|
| 1511 | # Remember that smearing_min/max can be None -> |
---|
| 1512 | # deal with it until Python gets discriminated unions |
---|
[9a7c81c] | 1513 | self.addWeightingToData(data) |
---|
[116dd4c1] | 1514 | |
---|
[8b480d27] | 1515 | # Get the constraints. |
---|
| 1516 | constraints = self.getComplexConstraintsForModel() |
---|
| 1517 | if fitter is None: |
---|
| 1518 | # For single fits - check for inter-model constraints |
---|
| 1519 | constraints = self.getConstraintsForFitting() |
---|
[3b3b40b] | 1520 | |
---|
[9a7c81c] | 1521 | smearer = self.smearing_widget.smearer() |
---|
[116dd4c1] | 1522 | handler = None |
---|
| 1523 | batch_inputs = {} |
---|
| 1524 | batch_outputs = {} |
---|
| 1525 | |
---|
| 1526 | fitters = [] |
---|
| 1527 | for fit_index in self.all_data: |
---|
| 1528 | fitter_single = Fit() if fitter is None else fitter |
---|
| 1529 | data = GuiUtils.dataFromItem(fit_index) |
---|
[9a7c81c] | 1530 | # Potential weights added directly to data |
---|
| 1531 | self.addWeightingToData(data) |
---|
[116dd4c1] | 1532 | try: |
---|
| 1533 | fitter_single.set_model(model, fit_id, params_to_fit, data=data, |
---|
| 1534 | constraints=constraints) |
---|
| 1535 | except ValueError as ex: |
---|
[3b3b40b] | 1536 | raise ValueError("Setting model parameters failed with: %s" % ex) |
---|
[116dd4c1] | 1537 | |
---|
| 1538 | qmin, qmax, _ = self.logic.computeRangeFromData(data) |
---|
| 1539 | fitter_single.set_data(data=data, id=fit_id, smearer=smearer, qmin=qmin, |
---|
| 1540 | qmax=qmax) |
---|
| 1541 | fitter_single.select_problem_for_fit(id=fit_id, value=1) |
---|
| 1542 | if fitter is None: |
---|
| 1543 | # Assign id to the new fitter only |
---|
| 1544 | fitter_single.fitter_id = [self.page_id] |
---|
| 1545 | fit_id += 1 |
---|
| 1546 | fitters.append(fitter_single) |
---|
| 1547 | |
---|
| 1548 | return fitters, fit_id |
---|
| 1549 | |
---|
[f182f93] | 1550 | def iterateOverModel(self, func): |
---|
| 1551 | """ |
---|
| 1552 | Take func and throw it inside the model row loop |
---|
| 1553 | """ |
---|
[b3e8629] | 1554 | for row_i in range(self._model_model.rowCount()): |
---|
[f182f93] | 1555 | func(row_i) |
---|
| 1556 | |
---|
| 1557 | def updateModelFromList(self, param_dict): |
---|
| 1558 | """ |
---|
| 1559 | Update the model with new parameters, create the errors column |
---|
| 1560 | """ |
---|
| 1561 | assert isinstance(param_dict, dict) |
---|
| 1562 | if not dict: |
---|
| 1563 | return |
---|
| 1564 | |
---|
[919d47c] | 1565 | def updateFittedValues(row): |
---|
[f182f93] | 1566 | # Utility function for main model update |
---|
[d7ff531] | 1567 | # internal so can use closure for param_dict |
---|
[919d47c] | 1568 | param_name = str(self._model_model.item(row, 0).text()) |
---|
[00b7ddf0] | 1569 | if not self.isCheckable(row) or param_name not in list(param_dict.keys()): |
---|
[f182f93] | 1570 | return |
---|
| 1571 | # modify the param value |
---|
[454670d] | 1572 | param_repr = GuiUtils.formatNumber(param_dict[param_name][0], high=True) |
---|
[919d47c] | 1573 | self._model_model.item(row, 1).setText(param_repr) |
---|
[f182f93] | 1574 | if self.has_error_column: |
---|
[454670d] | 1575 | error_repr = GuiUtils.formatNumber(param_dict[param_name][1], high=True) |
---|
[919d47c] | 1576 | self._model_model.item(row, 2).setText(error_repr) |
---|
[f182f93] | 1577 | |
---|
[919d47c] | 1578 | def updatePolyValues(row): |
---|
| 1579 | # Utility function for updateof polydispersity part of the main model |
---|
| 1580 | param_name = str(self._model_model.item(row, 0).text())+'.width' |
---|
[00b7ddf0] | 1581 | if not self.isCheckable(row) or param_name not in list(param_dict.keys()): |
---|
[919d47c] | 1582 | return |
---|
| 1583 | # modify the param value |
---|
| 1584 | param_repr = GuiUtils.formatNumber(param_dict[param_name][0], high=True) |
---|
| 1585 | self._model_model.item(row, 0).child(0).child(0,1).setText(param_repr) |
---|
[906e0c7] | 1586 | # modify the param error |
---|
| 1587 | if self.has_error_column: |
---|
| 1588 | error_repr = GuiUtils.formatNumber(param_dict[param_name][1], high=True) |
---|
| 1589 | self._model_model.item(row, 0).child(0).child(0,2).setText(error_repr) |
---|
[919d47c] | 1590 | |
---|
| 1591 | def createErrorColumn(row): |
---|
[f182f93] | 1592 | # Utility function for error column update |
---|
| 1593 | item = QtGui.QStandardItem() |
---|
[919d47c] | 1594 | def createItem(param_name): |
---|
[f182f93] | 1595 | error_repr = GuiUtils.formatNumber(param_dict[param_name][1], high=True) |
---|
| 1596 | item.setText(error_repr) |
---|
[919d47c] | 1597 | def curr_param(): |
---|
| 1598 | return str(self._model_model.item(row, 0).text()) |
---|
| 1599 | |
---|
[b3e8629] | 1600 | [createItem(param_name) for param_name in list(param_dict.keys()) if curr_param() == param_name] |
---|
[919d47c] | 1601 | |
---|
[f182f93] | 1602 | error_column.append(item) |
---|
| 1603 | |
---|
[906e0c7] | 1604 | def createPolyErrorColumn(row): |
---|
| 1605 | # Utility function for error column update in the polydispersity sub-rows |
---|
| 1606 | # NOTE: only creates empty items; updatePolyValues adds the error value |
---|
| 1607 | item = self._model_model.item(row, 0) |
---|
| 1608 | if not item.hasChildren(): |
---|
| 1609 | return |
---|
| 1610 | poly_item = item.child(0) |
---|
| 1611 | if not poly_item.hasChildren(): |
---|
| 1612 | return |
---|
| 1613 | poly_item.insertColumn(2, [QtGui.QStandardItem("")]) |
---|
| 1614 | |
---|
[2da5759] | 1615 | # block signals temporarily, so we don't end up |
---|
| 1616 | # updating charts with every single model change on the end of fitting |
---|
| 1617 | self._model_model.blockSignals(True) |
---|
[906e0c7] | 1618 | |
---|
| 1619 | if not self.has_error_column: |
---|
| 1620 | # create top-level error column |
---|
| 1621 | error_column = [] |
---|
| 1622 | self.lstParams.itemDelegate().addErrorColumn() |
---|
| 1623 | self.iterateOverModel(createErrorColumn) |
---|
| 1624 | |
---|
| 1625 | # we need to enable signals for this, otherwise the final column mysteriously disappears (don't ask, I don't |
---|
| 1626 | # know) |
---|
| 1627 | self._model_model.blockSignals(False) |
---|
| 1628 | self._model_model.insertColumn(2, error_column) |
---|
| 1629 | self._model_model.blockSignals(True) |
---|
| 1630 | |
---|
| 1631 | FittingUtilities.addErrorHeadersToModel(self._model_model) |
---|
| 1632 | |
---|
| 1633 | # create error column in polydispersity sub-rows |
---|
| 1634 | self.iterateOverModel(createPolyErrorColumn) |
---|
| 1635 | |
---|
| 1636 | self.has_error_column = True |
---|
| 1637 | |
---|
[d7ff531] | 1638 | self.iterateOverModel(updateFittedValues) |
---|
[919d47c] | 1639 | self.iterateOverModel(updatePolyValues) |
---|
[f182f93] | 1640 | |
---|
[906e0c7] | 1641 | self._model_model.blockSignals(False) |
---|
[f182f93] | 1642 | |
---|
[d7ff531] | 1643 | # Adjust the table cells width. |
---|
| 1644 | # TODO: find a way to dynamically adjust column width while resized expanding |
---|
| 1645 | self.lstParams.resizeColumnToContents(0) |
---|
| 1646 | self.lstParams.resizeColumnToContents(4) |
---|
| 1647 | self.lstParams.resizeColumnToContents(5) |
---|
[4992ff2] | 1648 | self.lstParams.setSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Expanding) |
---|
[d7ff531] | 1649 | |
---|
[8e2cd79] | 1650 | def iterateOverPolyModel(self, func): |
---|
| 1651 | """ |
---|
| 1652 | Take func and throw it inside the poly model row loop |
---|
| 1653 | """ |
---|
| 1654 | for row_i in range(self._poly_model.rowCount()): |
---|
| 1655 | func(row_i) |
---|
| 1656 | |
---|
[aca8418] | 1657 | def updatePolyModelFromList(self, param_dict): |
---|
| 1658 | """ |
---|
| 1659 | Update the polydispersity model with new parameters, create the errors column |
---|
| 1660 | """ |
---|
| 1661 | assert isinstance(param_dict, dict) |
---|
| 1662 | if not dict: |
---|
| 1663 | return |
---|
| 1664 | |
---|
| 1665 | def updateFittedValues(row_i): |
---|
| 1666 | # Utility function for main model update |
---|
| 1667 | # internal so can use closure for param_dict |
---|
| 1668 | if row_i >= self._poly_model.rowCount(): |
---|
| 1669 | return |
---|
| 1670 | param_name = str(self._poly_model.item(row_i, 0).text()).rsplit()[-1] + '.width' |
---|
[b3e8629] | 1671 | if param_name not in list(param_dict.keys()): |
---|
[aca8418] | 1672 | return |
---|
| 1673 | # modify the param value |
---|
| 1674 | param_repr = GuiUtils.formatNumber(param_dict[param_name][0], high=True) |
---|
| 1675 | self._poly_model.item(row_i, 1).setText(param_repr) |
---|
| 1676 | if self.has_poly_error_column: |
---|
| 1677 | error_repr = GuiUtils.formatNumber(param_dict[param_name][1], high=True) |
---|
| 1678 | self._poly_model.item(row_i, 2).setText(error_repr) |
---|
| 1679 | |
---|
[919d47c] | 1680 | |
---|
[aca8418] | 1681 | def createErrorColumn(row_i): |
---|
| 1682 | # Utility function for error column update |
---|
| 1683 | if row_i >= self._poly_model.rowCount(): |
---|
| 1684 | return |
---|
| 1685 | item = QtGui.QStandardItem() |
---|
[919d47c] | 1686 | |
---|
| 1687 | def createItem(param_name): |
---|
[aca8418] | 1688 | error_repr = GuiUtils.formatNumber(param_dict[param_name][1], high=True) |
---|
| 1689 | item.setText(error_repr) |
---|
[919d47c] | 1690 | |
---|
| 1691 | def poly_param(): |
---|
| 1692 | return str(self._poly_model.item(row_i, 0).text()).rsplit()[-1] + '.width' |
---|
| 1693 | |
---|
[b3e8629] | 1694 | [createItem(param_name) for param_name in list(param_dict.keys()) if poly_param() == param_name] |
---|
[919d47c] | 1695 | |
---|
[aca8418] | 1696 | error_column.append(item) |
---|
| 1697 | |
---|
| 1698 | # block signals temporarily, so we don't end up |
---|
| 1699 | # updating charts with every single model change on the end of fitting |
---|
| 1700 | self._poly_model.blockSignals(True) |
---|
[8e2cd79] | 1701 | self.iterateOverPolyModel(updateFittedValues) |
---|
[aca8418] | 1702 | self._poly_model.blockSignals(False) |
---|
| 1703 | |
---|
| 1704 | if self.has_poly_error_column: |
---|
| 1705 | return |
---|
| 1706 | |
---|
[8eaa101] | 1707 | self.lstPoly.itemDelegate().addErrorColumn() |
---|
[aca8418] | 1708 | error_column = [] |
---|
[8e2cd79] | 1709 | self.iterateOverPolyModel(createErrorColumn) |
---|
[aca8418] | 1710 | |
---|
| 1711 | # switch off reponse to model change |
---|
| 1712 | self._poly_model.blockSignals(True) |
---|
| 1713 | self._poly_model.insertColumn(2, error_column) |
---|
| 1714 | self._poly_model.blockSignals(False) |
---|
| 1715 | FittingUtilities.addErrorPolyHeadersToModel(self._poly_model) |
---|
| 1716 | |
---|
| 1717 | self.has_poly_error_column = True |
---|
| 1718 | |
---|
[8e2cd79] | 1719 | def iterateOverMagnetModel(self, func): |
---|
| 1720 | """ |
---|
| 1721 | Take func and throw it inside the magnet model row loop |
---|
| 1722 | """ |
---|
[30339cc] | 1723 | for row_i in range(self._magnet_model.rowCount()): |
---|
[00b7ddf0] | 1724 | if self.isCheckable(row_i): |
---|
| 1725 | func(row_i) |
---|
[8e2cd79] | 1726 | |
---|
[b00414d] | 1727 | def updateMagnetModelFromList(self, param_dict): |
---|
| 1728 | """ |
---|
| 1729 | Update the magnetic model with new parameters, create the errors column |
---|
| 1730 | """ |
---|
| 1731 | assert isinstance(param_dict, dict) |
---|
| 1732 | if not dict: |
---|
| 1733 | return |
---|
[3b3b40b] | 1734 | if self._magnet_model.rowCount() == 0: |
---|
[cee5c78] | 1735 | return |
---|
[b00414d] | 1736 | |
---|
| 1737 | def updateFittedValues(row): |
---|
| 1738 | # Utility function for main model update |
---|
| 1739 | # internal so can use closure for param_dict |
---|
[cee5c78] | 1740 | if self._magnet_model.item(row, 0) is None: |
---|
| 1741 | return |
---|
[b00414d] | 1742 | param_name = str(self._magnet_model.item(row, 0).text()) |
---|
[b3e8629] | 1743 | if param_name not in list(param_dict.keys()): |
---|
[b00414d] | 1744 | return |
---|
| 1745 | # modify the param value |
---|
| 1746 | param_repr = GuiUtils.formatNumber(param_dict[param_name][0], high=True) |
---|
| 1747 | self._magnet_model.item(row, 1).setText(param_repr) |
---|
| 1748 | if self.has_magnet_error_column: |
---|
| 1749 | error_repr = GuiUtils.formatNumber(param_dict[param_name][1], high=True) |
---|
| 1750 | self._magnet_model.item(row, 2).setText(error_repr) |
---|
| 1751 | |
---|
| 1752 | def createErrorColumn(row): |
---|
| 1753 | # Utility function for error column update |
---|
| 1754 | item = QtGui.QStandardItem() |
---|
| 1755 | def createItem(param_name): |
---|
| 1756 | error_repr = GuiUtils.formatNumber(param_dict[param_name][1], high=True) |
---|
| 1757 | item.setText(error_repr) |
---|
| 1758 | def curr_param(): |
---|
| 1759 | return str(self._magnet_model.item(row, 0).text()) |
---|
| 1760 | |
---|
[b3e8629] | 1761 | [createItem(param_name) for param_name in list(param_dict.keys()) if curr_param() == param_name] |
---|
[b00414d] | 1762 | |
---|
| 1763 | error_column.append(item) |
---|
| 1764 | |
---|
| 1765 | # block signals temporarily, so we don't end up |
---|
| 1766 | # updating charts with every single model change on the end of fitting |
---|
| 1767 | self._magnet_model.blockSignals(True) |
---|
[8e2cd79] | 1768 | self.iterateOverMagnetModel(updateFittedValues) |
---|
[b00414d] | 1769 | self._magnet_model.blockSignals(False) |
---|
| 1770 | |
---|
| 1771 | if self.has_magnet_error_column: |
---|
| 1772 | return |
---|
| 1773 | |
---|
| 1774 | self.lstMagnetic.itemDelegate().addErrorColumn() |
---|
| 1775 | error_column = [] |
---|
[8e2cd79] | 1776 | self.iterateOverMagnetModel(createErrorColumn) |
---|
[b00414d] | 1777 | |
---|
| 1778 | # switch off reponse to model change |
---|
| 1779 | self._magnet_model.blockSignals(True) |
---|
| 1780 | self._magnet_model.insertColumn(2, error_column) |
---|
| 1781 | self._magnet_model.blockSignals(False) |
---|
| 1782 | FittingUtilities.addErrorHeadersToModel(self._magnet_model) |
---|
| 1783 | |
---|
| 1784 | self.has_magnet_error_column = True |
---|
| 1785 | |
---|
[0268aed] | 1786 | def onPlot(self): |
---|
| 1787 | """ |
---|
| 1788 | Plot the current set of data |
---|
| 1789 | """ |
---|
[d48cc19] | 1790 | # Regardless of previous state, this should now be `plot show` functionality only |
---|
| 1791 | self.cmdPlot.setText("Show Plot") |
---|
[88e1f57] | 1792 | # Force data recalculation so existing charts are updated |
---|
| 1793 | self.recalculatePlotData() |
---|
[d48cc19] | 1794 | self.showPlot() |
---|
| 1795 | |
---|
[9a7c81c] | 1796 | def onSmearingOptionsUpdate(self): |
---|
| 1797 | """ |
---|
| 1798 | React to changes in the smearing widget |
---|
| 1799 | """ |
---|
| 1800 | self.calculateQGridForModel() |
---|
| 1801 | |
---|
[d48cc19] | 1802 | def recalculatePlotData(self): |
---|
| 1803 | """ |
---|
| 1804 | Generate a new dataset for model |
---|
| 1805 | """ |
---|
[180bd54] | 1806 | if not self.data_is_loaded: |
---|
[0268aed] | 1807 | self.createDefaultDataset() |
---|
| 1808 | self.calculateQGridForModel() |
---|
| 1809 | |
---|
[d48cc19] | 1810 | def showPlot(self): |
---|
| 1811 | """ |
---|
| 1812 | Show the current plot in MPL |
---|
| 1813 | """ |
---|
| 1814 | # Show the chart if ready |
---|
| 1815 | data_to_show = self.data if self.data_is_loaded else self.model_data |
---|
| 1816 | if data_to_show is not None: |
---|
| 1817 | self.communicate.plotRequestedSignal.emit([data_to_show]) |
---|
| 1818 | |
---|
[180bd54] | 1819 | def onOptionsUpdate(self): |
---|
[0268aed] | 1820 | """ |
---|
[180bd54] | 1821 | Update local option values and replot |
---|
[0268aed] | 1822 | """ |
---|
[180bd54] | 1823 | self.q_range_min, self.q_range_max, self.npts, self.log_points, self.weighting = \ |
---|
| 1824 | self.options_widget.state() |
---|
[61a92d4] | 1825 | # set Q range labels on the main tab |
---|
| 1826 | self.lblMinRangeDef.setText(str(self.q_range_min)) |
---|
| 1827 | self.lblMaxRangeDef.setText(str(self.q_range_max)) |
---|
[d48cc19] | 1828 | self.recalculatePlotData() |
---|
[6c8fb2c] | 1829 | |
---|
[0268aed] | 1830 | def setDefaultStructureCombo(self): |
---|
| 1831 | """ |
---|
| 1832 | Fill in the structure factors combo box with defaults |
---|
| 1833 | """ |
---|
| 1834 | structure_factor_list = self.master_category_dict.pop(CATEGORY_STRUCTURE) |
---|
| 1835 | factors = [factor[0] for factor in structure_factor_list] |
---|
| 1836 | factors.insert(0, STRUCTURE_DEFAULT) |
---|
| 1837 | self.cbStructureFactor.clear() |
---|
| 1838 | self.cbStructureFactor.addItems(sorted(factors)) |
---|
| 1839 | |
---|
[4d457df] | 1840 | def createDefaultDataset(self): |
---|
| 1841 | """ |
---|
| 1842 | Generate default Dataset 1D/2D for the given model |
---|
| 1843 | """ |
---|
| 1844 | # Create default datasets if no data passed |
---|
| 1845 | if self.is2D: |
---|
[180bd54] | 1846 | qmax = self.q_range_max/np.sqrt(2) |
---|
[4d457df] | 1847 | qstep = self.npts |
---|
| 1848 | self.logic.createDefault2dData(qmax, qstep, self.tab_id) |
---|
[180bd54] | 1849 | return |
---|
| 1850 | elif self.log_points: |
---|
| 1851 | qmin = -10.0 if self.q_range_min < 1.e-10 else np.log10(self.q_range_min) |
---|
[1bc27f1] | 1852 | qmax = 10.0 if self.q_range_max > 1.e10 else np.log10(self.q_range_max) |
---|
[180bd54] | 1853 | interval = np.logspace(start=qmin, stop=qmax, num=self.npts, endpoint=True, base=10.0) |
---|
[4d457df] | 1854 | else: |
---|
[180bd54] | 1855 | interval = np.linspace(start=self.q_range_min, stop=self.q_range_max, |
---|
[1bc27f1] | 1856 | num=self.npts, endpoint=True) |
---|
[180bd54] | 1857 | self.logic.createDefault1dData(interval, self.tab_id) |
---|
[60af928] | 1858 | |
---|
[5236449] | 1859 | def readCategoryInfo(self): |
---|
[60af928] | 1860 | """ |
---|
| 1861 | Reads the categories in from file |
---|
| 1862 | """ |
---|
| 1863 | self.master_category_dict = defaultdict(list) |
---|
| 1864 | self.by_model_dict = defaultdict(list) |
---|
| 1865 | self.model_enabled_dict = defaultdict(bool) |
---|
| 1866 | |
---|
[cbcdd2c] | 1867 | categorization_file = CategoryInstaller.get_user_file() |
---|
| 1868 | if not os.path.isfile(categorization_file): |
---|
| 1869 | categorization_file = CategoryInstaller.get_default_file() |
---|
| 1870 | with open(categorization_file, 'rb') as cat_file: |
---|
[60af928] | 1871 | self.master_category_dict = json.load(cat_file) |
---|
[5236449] | 1872 | self.regenerateModelDict() |
---|
[60af928] | 1873 | |
---|
[5236449] | 1874 | # Load the model dict |
---|
| 1875 | models = load_standard_models() |
---|
| 1876 | for model in models: |
---|
| 1877 | self.models[model.name] = model |
---|
| 1878 | |
---|
[3b3b40b] | 1879 | self.readCustomCategoryInfo() |
---|
| 1880 | |
---|
| 1881 | def readCustomCategoryInfo(self): |
---|
| 1882 | """ |
---|
| 1883 | Reads the custom model category |
---|
| 1884 | """ |
---|
| 1885 | #Looking for plugins |
---|
| 1886 | self.plugins = list(self.custom_models.values()) |
---|
| 1887 | plugin_list = [] |
---|
| 1888 | for name, plug in self.custom_models.items(): |
---|
| 1889 | self.models[name] = plug |
---|
| 1890 | plugin_list.append([name, True]) |
---|
| 1891 | self.master_category_dict[CATEGORY_CUSTOM] = plugin_list |
---|
| 1892 | |
---|
[5236449] | 1893 | def regenerateModelDict(self): |
---|
[60af928] | 1894 | """ |
---|
[cbcdd2c] | 1895 | Regenerates self.by_model_dict which has each model name as the |
---|
[60af928] | 1896 | key and the list of categories belonging to that model |
---|
| 1897 | along with the enabled mapping |
---|
| 1898 | """ |
---|
| 1899 | self.by_model_dict = defaultdict(list) |
---|
| 1900 | for category in self.master_category_dict: |
---|
| 1901 | for (model, enabled) in self.master_category_dict[category]: |
---|
| 1902 | self.by_model_dict[model].append(category) |
---|
| 1903 | self.model_enabled_dict[model] = enabled |
---|
| 1904 | |
---|
[86f88d1] | 1905 | def addBackgroundToModel(self, model): |
---|
| 1906 | """ |
---|
| 1907 | Adds background parameter with default values to the model |
---|
| 1908 | """ |
---|
[cbcdd2c] | 1909 | assert isinstance(model, QtGui.QStandardItemModel) |
---|
[86f88d1] | 1910 | checked_list = ['background', '0.001', '-inf', 'inf', '1/cm'] |
---|
[4d457df] | 1911 | FittingUtilities.addCheckedListToModel(model, checked_list) |
---|
[2add354] | 1912 | last_row = model.rowCount()-1 |
---|
| 1913 | model.item(last_row, 0).setEditable(False) |
---|
| 1914 | model.item(last_row, 4).setEditable(False) |
---|
[86f88d1] | 1915 | |
---|
| 1916 | def addScaleToModel(self, model): |
---|
| 1917 | """ |
---|
| 1918 | Adds scale parameter with default values to the model |
---|
| 1919 | """ |
---|
[cbcdd2c] | 1920 | assert isinstance(model, QtGui.QStandardItemModel) |
---|
[86f88d1] | 1921 | checked_list = ['scale', '1.0', '0.0', 'inf', ''] |
---|
[4d457df] | 1922 | FittingUtilities.addCheckedListToModel(model, checked_list) |
---|
[2add354] | 1923 | last_row = model.rowCount()-1 |
---|
| 1924 | model.item(last_row, 0).setEditable(False) |
---|
| 1925 | model.item(last_row, 4).setEditable(False) |
---|
[86f88d1] | 1926 | |
---|
[9d266d2] | 1927 | def addWeightingToData(self, data): |
---|
| 1928 | """ |
---|
| 1929 | Adds weighting contribution to fitting data |
---|
[1bc27f1] | 1930 | """ |
---|
[e1e3e09] | 1931 | # Send original data for weighting |
---|
[dc5ef15] | 1932 | weight = FittingUtilities.getWeight(data=data, is2d=self.is2D, flag=self.weighting) |
---|
[9a7c81c] | 1933 | if self.is2D: |
---|
| 1934 | data.err_data = weight |
---|
| 1935 | else: |
---|
| 1936 | data.dy = weight |
---|
| 1937 | pass |
---|
[9d266d2] | 1938 | |
---|
[0268aed] | 1939 | def updateQRange(self): |
---|
| 1940 | """ |
---|
| 1941 | Updates Q Range display |
---|
| 1942 | """ |
---|
| 1943 | if self.data_is_loaded: |
---|
| 1944 | self.q_range_min, self.q_range_max, self.npts = self.logic.computeDataRange() |
---|
| 1945 | # set Q range labels on the main tab |
---|
| 1946 | self.lblMinRangeDef.setText(str(self.q_range_min)) |
---|
| 1947 | self.lblMaxRangeDef.setText(str(self.q_range_max)) |
---|
| 1948 | # set Q range labels on the options tab |
---|
[180bd54] | 1949 | self.options_widget.updateQRange(self.q_range_min, self.q_range_max, self.npts) |
---|
[0268aed] | 1950 | |
---|
[4d457df] | 1951 | def SASModelToQModel(self, model_name, structure_factor=None): |
---|
[60af928] | 1952 | """ |
---|
[cbcdd2c] | 1953 | Setting model parameters into table based on selected category |
---|
[60af928] | 1954 | """ |
---|
| 1955 | # Crete/overwrite model items |
---|
| 1956 | self._model_model.clear() |
---|
[5236449] | 1957 | |
---|
[fd1ae6d1] | 1958 | # First, add parameters from the main model |
---|
| 1959 | if model_name is not None: |
---|
| 1960 | self.fromModelToQModel(model_name) |
---|
[5236449] | 1961 | |
---|
[fd1ae6d1] | 1962 | # Then, add structure factor derived parameters |
---|
[cd31251] | 1963 | if structure_factor is not None and structure_factor != "None": |
---|
[fd1ae6d1] | 1964 | if model_name is None: |
---|
| 1965 | # Instantiate the current sasmodel for SF-only models |
---|
| 1966 | self.kernel_module = self.models[structure_factor]() |
---|
| 1967 | self.fromStructureFactorToQModel(structure_factor) |
---|
[cd31251] | 1968 | else: |
---|
[fd1ae6d1] | 1969 | # Allow the SF combobox visibility for the given sasmodel |
---|
| 1970 | self.enableStructureFactorControl(structure_factor) |
---|
[cd31251] | 1971 | |
---|
[fd1ae6d1] | 1972 | # Then, add multishells |
---|
| 1973 | if model_name is not None: |
---|
| 1974 | # Multishell models need additional treatment |
---|
| 1975 | self.addExtraShells() |
---|
[86f88d1] | 1976 | |
---|
[5236449] | 1977 | # Add polydispersity to the model |
---|
[86f88d1] | 1978 | self.setPolyModel() |
---|
[5236449] | 1979 | # Add magnetic parameters to the model |
---|
[86f88d1] | 1980 | self.setMagneticModel() |
---|
[5236449] | 1981 | |
---|
[a9b568c] | 1982 | # Adjust the table cells width |
---|
| 1983 | self.lstParams.resizeColumnToContents(0) |
---|
[4992ff2] | 1984 | self.lstParams.setSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Expanding) |
---|
[a9b568c] | 1985 | |
---|
[5236449] | 1986 | # Now we claim the model has been loaded |
---|
[86f88d1] | 1987 | self.model_is_loaded = True |
---|
[be8f4b0] | 1988 | # Change the model name to a monicker |
---|
| 1989 | self.kernel_module.name = self.modelName() |
---|
[9a7c81c] | 1990 | # Update the smearing tab |
---|
| 1991 | self.smearing_widget.updateKernelModel(kernel_model=self.kernel_module) |
---|
[86f88d1] | 1992 | |
---|
[fd1ae6d1] | 1993 | # (Re)-create headers |
---|
| 1994 | FittingUtilities.addHeadersToModel(self._model_model) |
---|
[6964d44] | 1995 | self.lstParams.header().setFont(self.boldFont) |
---|
[fd1ae6d1] | 1996 | |
---|
[5236449] | 1997 | # Update Q Ranges |
---|
| 1998 | self.updateQRange() |
---|
| 1999 | |
---|
[fd1ae6d1] | 2000 | def fromModelToQModel(self, model_name): |
---|
| 2001 | """ |
---|
| 2002 | Setting model parameters into QStandardItemModel based on selected _model_ |
---|
| 2003 | """ |
---|
[3b3b40b] | 2004 | name = model_name |
---|
| 2005 | if self.cbCategory.currentText() == CATEGORY_CUSTOM: |
---|
| 2006 | # custom kernel load requires full path |
---|
| 2007 | name = os.path.join(ModelUtilities.find_plugins_dir(), model_name+".py") |
---|
[060413c] | 2008 | try: |
---|
| 2009 | kernel_module = generate.load_kernel_module(name) |
---|
| 2010 | except ModuleNotFoundError: |
---|
| 2011 | # maybe it's a recategorised custom model? |
---|
| 2012 | name = os.path.join(ModelUtilities.find_plugins_dir(), model_name+".py") |
---|
| 2013 | # If this rises, it's a valid problem. |
---|
| 2014 | kernel_module = generate.load_kernel_module(name) |
---|
[dc71408] | 2015 | |
---|
| 2016 | if hasattr(kernel_module, 'parameters'): |
---|
| 2017 | # built-in and custom models |
---|
| 2018 | self.model_parameters = modelinfo.make_parameter_table(getattr(kernel_module, 'parameters', [])) |
---|
| 2019 | |
---|
| 2020 | elif hasattr(kernel_module, 'model_info'): |
---|
| 2021 | # for sum/multiply models |
---|
| 2022 | self.model_parameters = kernel_module.model_info.parameters |
---|
| 2023 | |
---|
| 2024 | elif hasattr(kernel_module, 'Model') and hasattr(kernel_module.Model, "_model_info"): |
---|
| 2025 | # this probably won't work if there's no model_info, but just in case |
---|
| 2026 | self.model_parameters = kernel_module.Model._model_info.parameters |
---|
| 2027 | else: |
---|
| 2028 | # no parameters - default to blank table |
---|
| 2029 | msg = "No parameters found in model '{}'.".format(model_name) |
---|
| 2030 | logger.warning(msg) |
---|
| 2031 | self.model_parameters = modelinfo.ParameterTable([]) |
---|
[fd1ae6d1] | 2032 | |
---|
| 2033 | # Instantiate the current sasmodel |
---|
| 2034 | self.kernel_module = self.models[model_name]() |
---|
| 2035 | |
---|
| 2036 | # Explicitly add scale and background with default values |
---|
[6964d44] | 2037 | temp_undo_state = self.undo_supported |
---|
| 2038 | self.undo_supported = False |
---|
[fd1ae6d1] | 2039 | self.addScaleToModel(self._model_model) |
---|
| 2040 | self.addBackgroundToModel(self._model_model) |
---|
[6964d44] | 2041 | self.undo_supported = temp_undo_state |
---|
[fd1ae6d1] | 2042 | |
---|
[0d13814] | 2043 | self.shell_names = self.shellNamesList() |
---|
| 2044 | |
---|
[00b7ddf0] | 2045 | # Get new rows for QModel |
---|
[aca8418] | 2046 | new_rows = FittingUtilities.addParametersToModel(self.model_parameters, self.kernel_module, self.is2D) |
---|
| 2047 | |
---|
[00b7ddf0] | 2048 | # Add heading row |
---|
| 2049 | FittingUtilities.addHeadingRowToModel(self._model_model, model_name) |
---|
| 2050 | |
---|
| 2051 | # Update QModel |
---|
[fd1ae6d1] | 2052 | for row in new_rows: |
---|
| 2053 | self._model_model.appendRow(row) |
---|
| 2054 | # Update the counter used for multishell display |
---|
| 2055 | self._last_model_row = self._model_model.rowCount() |
---|
| 2056 | |
---|
| 2057 | def fromStructureFactorToQModel(self, structure_factor): |
---|
| 2058 | """ |
---|
| 2059 | Setting model parameters into QStandardItemModel based on selected _structure factor_ |
---|
| 2060 | """ |
---|
| 2061 | structure_module = generate.load_kernel_module(structure_factor) |
---|
| 2062 | structure_parameters = modelinfo.make_parameter_table(getattr(structure_module, 'parameters', [])) |
---|
[18d5c94a] | 2063 | |
---|
[5d1440e1] | 2064 | structure_kernel = self.models[structure_factor]() |
---|
[18d5c94a] | 2065 | form_kernel = self.kernel_module |
---|
[5d1440e1] | 2066 | |
---|
[18d5c94a] | 2067 | self.kernel_module = MultiplicationModel(form_kernel, structure_kernel) |
---|
[fd1ae6d1] | 2068 | |
---|
[00b7ddf0] | 2069 | # Get new rows for QModel |
---|
| 2070 | new_rows = FittingUtilities.addSimpleParametersToModel(structure_parameters, self.is2D) |
---|
[0d72cac] | 2071 | |
---|
[00b7ddf0] | 2072 | # Add heading row |
---|
| 2073 | FittingUtilities.addHeadingRowToModel(self._model_model, structure_factor) |
---|
[0d72cac] | 2074 | |
---|
[00b7ddf0] | 2075 | # Update QModel |
---|
[fd1ae6d1] | 2076 | for row in new_rows: |
---|
| 2077 | self._model_model.appendRow(row) |
---|
[b87dc1a] | 2078 | # disable fitting of parameters not listed in self.kernel_module (probably radius_effective) |
---|
[18d5c94a] | 2079 | if row[0].text() not in self.kernel_module.params.keys(): |
---|
| 2080 | row_num = self._model_model.rowCount() - 1 |
---|
| 2081 | FittingUtilities.markParameterDisabled(self._model_model, row_num) |
---|
| 2082 | |
---|
[fd1ae6d1] | 2083 | # Update the counter used for multishell display |
---|
| 2084 | self._last_model_row = self._model_model.rowCount() |
---|
| 2085 | |
---|
[6dbff18] | 2086 | def haveParamsToFit(self): |
---|
| 2087 | """ |
---|
| 2088 | Finds out if there are any parameters ready to be fitted |
---|
| 2089 | """ |
---|
| 2090 | return (self.main_params_to_fit!=[] |
---|
| 2091 | or self.poly_params_to_fit!=[] |
---|
| 2092 | or self.magnet_params_to_fit != []) and \ |
---|
| 2093 | self.logic.data_is_loaded |
---|
| 2094 | |
---|
[b00414d] | 2095 | def onMainParamsChange(self, item): |
---|
[cd31251] | 2096 | """ |
---|
| 2097 | Callback method for updating the sasmodel parameters with the GUI values |
---|
| 2098 | """ |
---|
[cbcdd2c] | 2099 | model_column = item.column() |
---|
[cd31251] | 2100 | |
---|
| 2101 | if model_column == 0: |
---|
[f182f93] | 2102 | self.checkboxSelected(item) |
---|
[6dbff18] | 2103 | self.cmdFit.setEnabled(self.haveParamsToFit()) |
---|
[6964d44] | 2104 | # Update state stack |
---|
| 2105 | self.updateUndo() |
---|
[cd31251] | 2106 | return |
---|
| 2107 | |
---|
[f182f93] | 2108 | model_row = item.row() |
---|
| 2109 | name_index = self._model_model.index(model_row, 0) |
---|
| 2110 | |
---|
[b00414d] | 2111 | # Extract changed value. |
---|
[2add354] | 2112 | try: |
---|
[fbfc488] | 2113 | value = GuiUtils.toDouble(item.text()) |
---|
[0261bc1] | 2114 | except TypeError: |
---|
[2add354] | 2115 | # Unparsable field |
---|
| 2116 | return |
---|
[fbfc488] | 2117 | |
---|
| 2118 | parameter_name = str(self._model_model.data(name_index)) # sld, background etc. |
---|
[cbcdd2c] | 2119 | |
---|
[00b3b40] | 2120 | # Update the parameter value - note: this supports +/-inf as well |
---|
[cbcdd2c] | 2121 | self.kernel_module.params[parameter_name] = value |
---|
| 2122 | |
---|
[8a32a6ff] | 2123 | # Update the parameter value - note: this supports +/-inf as well |
---|
[8f2548c] | 2124 | param_column = self.lstParams.itemDelegate().param_value |
---|
| 2125 | min_column = self.lstParams.itemDelegate().param_min |
---|
| 2126 | max_column = self.lstParams.itemDelegate().param_max |
---|
| 2127 | if model_column == param_column: |
---|
[8a32a6ff] | 2128 | self.kernel_module.setParam(parameter_name, value) |
---|
[8f2548c] | 2129 | elif model_column == min_column: |
---|
[8a32a6ff] | 2130 | # min/max to be changed in self.kernel_module.details[parameter_name] = ['Ang', 0.0, inf] |
---|
[8f2548c] | 2131 | self.kernel_module.details[parameter_name][1] = value |
---|
| 2132 | elif model_column == max_column: |
---|
| 2133 | self.kernel_module.details[parameter_name][2] = value |
---|
| 2134 | else: |
---|
| 2135 | # don't update the chart |
---|
| 2136 | return |
---|
[00b3b40] | 2137 | |
---|
| 2138 | # TODO: magnetic params in self.kernel_module.details['M0:parameter_name'] = value |
---|
| 2139 | # TODO: multishell params in self.kernel_module.details[??] = value |
---|
[cbcdd2c] | 2140 | |
---|
[d7ff531] | 2141 | # Force the chart update when actual parameters changed |
---|
| 2142 | if model_column == 1: |
---|
[d48cc19] | 2143 | self.recalculatePlotData() |
---|
[7d077d1] | 2144 | |
---|
[2241130] | 2145 | # Update state stack |
---|
[00b3b40] | 2146 | self.updateUndo() |
---|
[2241130] | 2147 | |
---|
[7fd20fc] | 2148 | def isCheckable(self, row): |
---|
| 2149 | return self._model_model.item(row, 0).isCheckable() |
---|
| 2150 | |
---|
[f182f93] | 2151 | def checkboxSelected(self, item): |
---|
| 2152 | # Assure we're dealing with checkboxes |
---|
| 2153 | if not item.isCheckable(): |
---|
| 2154 | return |
---|
| 2155 | status = item.checkState() |
---|
| 2156 | |
---|
| 2157 | # If multiple rows selected - toggle all of them, filtering uncheckable |
---|
| 2158 | # Switch off signaling from the model to avoid recursion |
---|
| 2159 | self._model_model.blockSignals(True) |
---|
| 2160 | # Convert to proper indices and set requested enablement |
---|
[7fd20fc] | 2161 | self.setParameterSelection(status) |
---|
[f182f93] | 2162 | self._model_model.blockSignals(False) |
---|
| 2163 | |
---|
| 2164 | # update the list of parameters to fit |
---|
[6dbff18] | 2165 | self.main_params_to_fit = self.checkedListFromModel(self._model_model) |
---|
[c1e380e] | 2166 | |
---|
| 2167 | def checkedListFromModel(self, model): |
---|
| 2168 | """ |
---|
| 2169 | Returns list of checked parameters for given model |
---|
| 2170 | """ |
---|
| 2171 | def isChecked(row): |
---|
| 2172 | return model.item(row, 0).checkState() == QtCore.Qt.Checked |
---|
| 2173 | |
---|
| 2174 | return [str(model.item(row_index, 0).text()) |
---|
[b3e8629] | 2175 | for row_index in range(model.rowCount()) |
---|
[c1e380e] | 2176 | if isChecked(row_index)] |
---|
[f182f93] | 2177 | |
---|
[6fd4e36] | 2178 | def createNewIndex(self, fitted_data): |
---|
| 2179 | """ |
---|
| 2180 | Create a model or theory index with passed Data1D/Data2D |
---|
| 2181 | """ |
---|
| 2182 | if self.data_is_loaded: |
---|
[0268aed] | 2183 | if not fitted_data.name: |
---|
| 2184 | name = self.nameForFittedData(self.data.filename) |
---|
| 2185 | fitted_data.title = name |
---|
| 2186 | fitted_data.name = name |
---|
| 2187 | fitted_data.filename = name |
---|
[7d077d1] | 2188 | fitted_data.symbol = "Line" |
---|
[6fd4e36] | 2189 | self.updateModelIndex(fitted_data) |
---|
| 2190 | else: |
---|
[3ae9179] | 2191 | if not fitted_data.name: |
---|
| 2192 | name = self.nameForFittedData(self.kernel_module.id) |
---|
| 2193 | else: |
---|
| 2194 | name = fitted_data.name |
---|
[0268aed] | 2195 | fitted_data.title = name |
---|
| 2196 | fitted_data.filename = name |
---|
| 2197 | fitted_data.symbol = "Line" |
---|
[6fd4e36] | 2198 | self.createTheoryIndex(fitted_data) |
---|
| 2199 | |
---|
| 2200 | def updateModelIndex(self, fitted_data): |
---|
| 2201 | """ |
---|
| 2202 | Update a QStandardModelIndex containing model data |
---|
| 2203 | """ |
---|
[00b3b40] | 2204 | name = self.nameFromData(fitted_data) |
---|
[0268aed] | 2205 | # Make this a line if no other defined |
---|
[7d077d1] | 2206 | if hasattr(fitted_data, 'symbol') and fitted_data.symbol is None: |
---|
[0268aed] | 2207 | fitted_data.symbol = 'Line' |
---|
[6fd4e36] | 2208 | # Notify the GUI manager so it can update the main model in DataExplorer |
---|
[d4dac80] | 2209 | GuiUtils.updateModelItemWithPlot(self.all_data[self.data_index], fitted_data, name) |
---|
[6fd4e36] | 2210 | |
---|
| 2211 | def createTheoryIndex(self, fitted_data): |
---|
| 2212 | """ |
---|
| 2213 | Create a QStandardModelIndex containing model data |
---|
| 2214 | """ |
---|
[00b3b40] | 2215 | name = self.nameFromData(fitted_data) |
---|
| 2216 | # Notify the GUI manager so it can create the theory model in DataExplorer |
---|
[b3e8629] | 2217 | new_item = GuiUtils.createModelItemWithPlot(fitted_data, name=name) |
---|
[00b3b40] | 2218 | self.communicate.updateTheoryFromPerspectiveSignal.emit(new_item) |
---|
| 2219 | |
---|
| 2220 | def nameFromData(self, fitted_data): |
---|
| 2221 | """ |
---|
| 2222 | Return name for the dataset. Terribly impure function. |
---|
| 2223 | """ |
---|
[0268aed] | 2224 | if fitted_data.name is None: |
---|
[00b3b40] | 2225 | name = self.nameForFittedData(self.logic.data.filename) |
---|
[0268aed] | 2226 | fitted_data.title = name |
---|
| 2227 | fitted_data.name = name |
---|
| 2228 | fitted_data.filename = name |
---|
| 2229 | else: |
---|
| 2230 | name = fitted_data.name |
---|
[00b3b40] | 2231 | return name |
---|
[5236449] | 2232 | |
---|
[4d457df] | 2233 | def methodCalculateForData(self): |
---|
| 2234 | '''return the method for data calculation''' |
---|
| 2235 | return Calc1D if isinstance(self.data, Data1D) else Calc2D |
---|
| 2236 | |
---|
| 2237 | def methodCompleteForData(self): |
---|
| 2238 | '''return the method for result parsin on calc complete ''' |
---|
[d4dac80] | 2239 | return self.completed1D if isinstance(self.data, Data1D) else self.completed2D |
---|
[4d457df] | 2240 | |
---|
[d4dac80] | 2241 | def calculateQGridForModelExt(self, data=None, model=None, completefn=None, use_threads=True): |
---|
[86f88d1] | 2242 | """ |
---|
[d4dac80] | 2243 | Wrapper for Calc1D/2D calls |
---|
[86f88d1] | 2244 | """ |
---|
[d4dac80] | 2245 | if data is None: |
---|
| 2246 | data = self.data |
---|
| 2247 | if model is None: |
---|
| 2248 | model = self.kernel_module |
---|
| 2249 | if completefn is None: |
---|
| 2250 | completefn = self.methodCompleteForData() |
---|
[9a7c81c] | 2251 | smearer = self.smearing_widget.smearer() |
---|
[4d457df] | 2252 | # Awful API to a backend method. |
---|
[d4dac80] | 2253 | calc_thread = self.methodCalculateForData()(data=data, |
---|
| 2254 | model=model, |
---|
[1bc27f1] | 2255 | page_id=0, |
---|
| 2256 | qmin=self.q_range_min, |
---|
| 2257 | qmax=self.q_range_max, |
---|
[9a7c81c] | 2258 | smearer=smearer, |
---|
[1bc27f1] | 2259 | state=None, |
---|
| 2260 | weight=None, |
---|
| 2261 | fid=None, |
---|
| 2262 | toggle_mode_on=False, |
---|
[d4dac80] | 2263 | completefn=completefn, |
---|
[1bc27f1] | 2264 | update_chisqr=True, |
---|
| 2265 | exception_handler=self.calcException, |
---|
| 2266 | source=None) |
---|
[d4dac80] | 2267 | if use_threads: |
---|
| 2268 | if LocalConfig.USING_TWISTED: |
---|
| 2269 | # start the thread with twisted |
---|
| 2270 | thread = threads.deferToThread(calc_thread.compute) |
---|
| 2271 | thread.addCallback(completefn) |
---|
| 2272 | thread.addErrback(self.calculateDataFailed) |
---|
| 2273 | else: |
---|
| 2274 | # Use the old python threads + Queue |
---|
| 2275 | calc_thread.queue() |
---|
| 2276 | calc_thread.ready(2.5) |
---|
| 2277 | else: |
---|
| 2278 | results = calc_thread.compute() |
---|
| 2279 | completefn(results) |
---|
[4d457df] | 2280 | |
---|
[d4dac80] | 2281 | def calculateQGridForModel(self): |
---|
| 2282 | """ |
---|
| 2283 | Prepare the fitting data object, based on current ModelModel |
---|
| 2284 | """ |
---|
| 2285 | if self.kernel_module is None: |
---|
| 2286 | return |
---|
| 2287 | self.calculateQGridForModelExt() |
---|
[6964d44] | 2288 | |
---|
[aca8418] | 2289 | def calculateDataFailed(self, reason): |
---|
[6964d44] | 2290 | """ |
---|
[c1e380e] | 2291 | Thread returned error |
---|
[6964d44] | 2292 | """ |
---|
[b3e8629] | 2293 | print("Calculate Data failed with ", reason) |
---|
[5236449] | 2294 | |
---|
[d4dac80] | 2295 | def completed1D(self, return_data): |
---|
| 2296 | self.Calc1DFinishedSignal.emit(return_data) |
---|
| 2297 | |
---|
| 2298 | def completed2D(self, return_data): |
---|
| 2299 | self.Calc2DFinishedSignal.emit(return_data) |
---|
| 2300 | |
---|
[cbcdd2c] | 2301 | def complete1D(self, return_data): |
---|
[5236449] | 2302 | """ |
---|
[4d457df] | 2303 | Plot the current 1D data |
---|
| 2304 | """ |
---|
[d48cc19] | 2305 | fitted_data = self.logic.new1DPlot(return_data, self.tab_id) |
---|
[0fe7e5b] | 2306 | residuals = self.calculateResiduals(fitted_data) |
---|
[d48cc19] | 2307 | self.model_data = fitted_data |
---|
[cbcdd2c] | 2308 | |
---|
[0fe7e5b] | 2309 | new_plots = [fitted_data, residuals] |
---|
| 2310 | |
---|
[3ae9179] | 2311 | # Create plots for intermediate product data |
---|
| 2312 | pq_data, sq_data = self.logic.new1DProductPlots(return_data, self.tab_id) |
---|
[b4d05bd] | 2313 | if pq_data is not None: |
---|
[6b3a231] | 2314 | pq_data.symbol = "Line" |
---|
[3ae9179] | 2315 | self.createNewIndex(pq_data) |
---|
[9463ca2] | 2316 | # self.communicate.plotUpdateSignal.emit([pq_data]) |
---|
[0fe7e5b] | 2317 | new_plots.append(pq_data) |
---|
[b4d05bd] | 2318 | if sq_data is not None: |
---|
| 2319 | sq_data.symbol = "Line" |
---|
[3ae9179] | 2320 | self.createNewIndex(sq_data) |
---|
[9463ca2] | 2321 | # self.communicate.plotUpdateSignal.emit([sq_data]) |
---|
[0fe7e5b] | 2322 | new_plots.append(sq_data) |
---|
| 2323 | |
---|
| 2324 | if self.data_is_loaded: |
---|
| 2325 | GuiUtils.deleteRedundantPlots(self.all_data[self.data_index], new_plots) |
---|
[3ae9179] | 2326 | |
---|
[9463ca2] | 2327 | for plot in new_plots: |
---|
| 2328 | if hasattr(plot, "id") and "esidual" in plot.id: |
---|
| 2329 | # TODO: fix updates to residuals plot |
---|
| 2330 | pass |
---|
[eef298d4] | 2331 | elif plot is not None: |
---|
[9463ca2] | 2332 | self.communicate.plotUpdateSignal.emit([plot]) |
---|
| 2333 | |
---|
[cbcdd2c] | 2334 | def complete2D(self, return_data): |
---|
| 2335 | """ |
---|
[4d457df] | 2336 | Plot the current 2D data |
---|
| 2337 | """ |
---|
[6fd4e36] | 2338 | fitted_data = self.logic.new2DPlot(return_data) |
---|
| 2339 | self.calculateResiduals(fitted_data) |
---|
[d48cc19] | 2340 | self.model_data = fitted_data |
---|
[6fd4e36] | 2341 | |
---|
| 2342 | def calculateResiduals(self, fitted_data): |
---|
| 2343 | """ |
---|
[9463ca2] | 2344 | Calculate and print Chi2 and display chart of residuals. Returns residuals plot object. |
---|
[6fd4e36] | 2345 | """ |
---|
| 2346 | # Create a new index for holding data |
---|
[7d077d1] | 2347 | fitted_data.symbol = "Line" |
---|
[6964d44] | 2348 | |
---|
| 2349 | # Modify fitted_data with weighting |
---|
| 2350 | self.addWeightingToData(fitted_data) |
---|
| 2351 | |
---|
[6fd4e36] | 2352 | self.createNewIndex(fitted_data) |
---|
| 2353 | # Calculate difference between return_data and logic.data |
---|
[2add354] | 2354 | self.chi2 = FittingUtilities.calculateChi2(fitted_data, self.logic.data) |
---|
[6fd4e36] | 2355 | # Update the control |
---|
[2add354] | 2356 | chi2_repr = "---" if self.chi2 is None else GuiUtils.formatNumber(self.chi2, high=True) |
---|
[f182f93] | 2357 | self.lblChi2Value.setText(chi2_repr) |
---|
[cbcdd2c] | 2358 | |
---|
[9463ca2] | 2359 | # self.communicate.plotUpdateSignal.emit([fitted_data]) |
---|
[d48cc19] | 2360 | |
---|
[0268aed] | 2361 | # Plot residuals if actual data |
---|
[aca8418] | 2362 | if not self.data_is_loaded: |
---|
| 2363 | return |
---|
| 2364 | |
---|
| 2365 | residuals_plot = FittingUtilities.plotResiduals(self.data, fitted_data) |
---|
| 2366 | residuals_plot.id = "Residual " + residuals_plot.id |
---|
| 2367 | self.createNewIndex(residuals_plot) |
---|
[0fe7e5b] | 2368 | return residuals_plot |
---|
[5236449] | 2369 | |
---|
[3d18691] | 2370 | def onCategoriesChanged(self): |
---|
| 2371 | """ |
---|
| 2372 | Reload the category/model comboboxes |
---|
| 2373 | """ |
---|
| 2374 | # Store the current combo indices |
---|
| 2375 | current_cat = self.cbCategory.currentText() |
---|
| 2376 | current_model = self.cbModel.currentText() |
---|
| 2377 | |
---|
| 2378 | # reread the category file and repopulate the combo |
---|
| 2379 | self.cbCategory.blockSignals(True) |
---|
| 2380 | self.cbCategory.clear() |
---|
| 2381 | self.readCategoryInfo() |
---|
| 2382 | self.initializeCategoryCombo() |
---|
| 2383 | |
---|
| 2384 | # Scroll back to the original index in Categories |
---|
| 2385 | new_index = self.cbCategory.findText(current_cat) |
---|
| 2386 | if new_index != -1: |
---|
| 2387 | self.cbCategory.setCurrentIndex(new_index) |
---|
| 2388 | self.cbCategory.blockSignals(False) |
---|
| 2389 | # ...and in the Models |
---|
| 2390 | self.cbModel.blockSignals(True) |
---|
| 2391 | new_index = self.cbModel.findText(current_model) |
---|
| 2392 | if new_index != -1: |
---|
| 2393 | self.cbModel.setCurrentIndex(new_index) |
---|
| 2394 | self.cbModel.blockSignals(False) |
---|
| 2395 | |
---|
| 2396 | return |
---|
| 2397 | |
---|
[5236449] | 2398 | def calcException(self, etype, value, tb): |
---|
| 2399 | """ |
---|
[c1e380e] | 2400 | Thread threw an exception. |
---|
[5236449] | 2401 | """ |
---|
[c1e380e] | 2402 | # TODO: remimplement thread cancellation |
---|
[5236449] | 2403 | logging.error("".join(traceback.format_exception(etype, value, tb))) |
---|
[60af928] | 2404 | |
---|
| 2405 | def setTableProperties(self, table): |
---|
| 2406 | """ |
---|
| 2407 | Setting table properties |
---|
| 2408 | """ |
---|
| 2409 | # Table properties |
---|
| 2410 | table.verticalHeader().setVisible(False) |
---|
| 2411 | table.setAlternatingRowColors(True) |
---|
[4992ff2] | 2412 | table.setSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Expanding) |
---|
| 2413 | table.setSelectionBehavior(QtWidgets.QAbstractItemView.SelectRows) |
---|
[f46f6dc] | 2414 | table.resizeColumnsToContents() |
---|
| 2415 | |
---|
[60af928] | 2416 | # Header |
---|
| 2417 | header = table.horizontalHeader() |
---|
[4992ff2] | 2418 | header.setSectionResizeMode(QtWidgets.QHeaderView.ResizeToContents) |
---|
| 2419 | header.ResizeMode(QtWidgets.QHeaderView.Interactive) |
---|
[f46f6dc] | 2420 | |
---|
[4992ff2] | 2421 | # Qt5: the following 2 lines crash - figure out why! |
---|
[e43fc91] | 2422 | # Resize column 0 and 7 to content |
---|
[4992ff2] | 2423 | #header.setSectionResizeMode(0, QtWidgets.QHeaderView.ResizeToContents) |
---|
| 2424 | #header.setSectionResizeMode(7, QtWidgets.QHeaderView.ResizeToContents) |
---|
[60af928] | 2425 | |
---|
| 2426 | def setPolyModel(self): |
---|
| 2427 | """ |
---|
| 2428 | Set polydispersity values |
---|
| 2429 | """ |
---|
[86f88d1] | 2430 | if not self.model_parameters: |
---|
| 2431 | return |
---|
| 2432 | self._poly_model.clear() |
---|
| 2433 | |
---|
[e43fc91] | 2434 | [self.setPolyModelParameters(i, param) for i, param in \ |
---|
[aca8418] | 2435 | enumerate(self.model_parameters.form_volume_parameters) if param.polydisperse] |
---|
[4d457df] | 2436 | FittingUtilities.addPolyHeadersToModel(self._poly_model) |
---|
[60af928] | 2437 | |
---|
[e43fc91] | 2438 | def setPolyModelParameters(self, i, param): |
---|
[aca8418] | 2439 | """ |
---|
[0d13814] | 2440 | Standard of multishell poly parameter driver |
---|
[aca8418] | 2441 | """ |
---|
[0d13814] | 2442 | param_name = param.name |
---|
| 2443 | # see it the parameter is multishell |
---|
[06b0138] | 2444 | if '[' in param.name: |
---|
[0d13814] | 2445 | # Skip empty shells |
---|
| 2446 | if self.current_shell_displayed == 0: |
---|
| 2447 | return |
---|
| 2448 | else: |
---|
| 2449 | # Create as many entries as current shells |
---|
[b3e8629] | 2450 | for ishell in range(1, self.current_shell_displayed+1): |
---|
[0d13814] | 2451 | # Remove [n] and add the shell numeral |
---|
| 2452 | name = param_name[0:param_name.index('[')] + str(ishell) |
---|
[e43fc91] | 2453 | self.addNameToPolyModel(i, name) |
---|
[0d13814] | 2454 | else: |
---|
| 2455 | # Just create a simple param entry |
---|
[e43fc91] | 2456 | self.addNameToPolyModel(i, param_name) |
---|
[0d13814] | 2457 | |
---|
[e43fc91] | 2458 | def addNameToPolyModel(self, i, param_name): |
---|
[0d13814] | 2459 | """ |
---|
| 2460 | Creates a checked row in the poly model with param_name |
---|
| 2461 | """ |
---|
[144ec831] | 2462 | # Polydisp. values from the sasmodel |
---|
[0d13814] | 2463 | width = self.kernel_module.getParam(param_name + '.width') |
---|
| 2464 | npts = self.kernel_module.getParam(param_name + '.npts') |
---|
| 2465 | nsigs = self.kernel_module.getParam(param_name + '.nsigmas') |
---|
| 2466 | _, min, max = self.kernel_module.details[param_name] |
---|
[144ec831] | 2467 | |
---|
| 2468 | # Construct a row with polydisp. related variable. |
---|
| 2469 | # This will get added to the polydisp. model |
---|
| 2470 | # Note: last argument needs extra space padding for decent display of the control |
---|
[0d13814] | 2471 | checked_list = ["Distribution of " + param_name, str(width), |
---|
| 2472 | str(min), str(max), |
---|
[e43fc91] | 2473 | str(npts), str(nsigs), "gaussian ",''] |
---|
[aca8418] | 2474 | FittingUtilities.addCheckedListToModel(self._poly_model, checked_list) |
---|
| 2475 | |
---|
| 2476 | # All possible polydisp. functions as strings in combobox |
---|
[4992ff2] | 2477 | func = QtWidgets.QComboBox() |
---|
[b3e8629] | 2478 | func.addItems([str(name_disp) for name_disp in POLYDISPERSITY_MODELS.keys()]) |
---|
[e43fc91] | 2479 | # Set the default index |
---|
[aca8418] | 2480 | func.setCurrentIndex(func.findText(DEFAULT_POLYDISP_FUNCTION)) |
---|
[e43fc91] | 2481 | ind = self._poly_model.index(i,self.lstPoly.itemDelegate().poly_function) |
---|
| 2482 | self.lstPoly.setIndexWidget(ind, func) |
---|
| 2483 | func.currentIndexChanged.connect(lambda: self.onPolyComboIndexChange(str(func.currentText()), i)) |
---|
| 2484 | |
---|
| 2485 | def onPolyFilenameChange(self, row_index): |
---|
| 2486 | """ |
---|
| 2487 | Respond to filename_updated signal from the delegate |
---|
| 2488 | """ |
---|
| 2489 | # For the given row, invoke the "array" combo handler |
---|
| 2490 | array_caption = 'array' |
---|
[8222f171] | 2491 | |
---|
[e43fc91] | 2492 | # Get the combo box reference |
---|
| 2493 | ind = self._poly_model.index(row_index, self.lstPoly.itemDelegate().poly_function) |
---|
| 2494 | widget = self.lstPoly.indexWidget(ind) |
---|
[8222f171] | 2495 | |
---|
[e43fc91] | 2496 | # Update the combo box so it displays "array" |
---|
| 2497 | widget.blockSignals(True) |
---|
| 2498 | widget.setCurrentIndex(self.lstPoly.itemDelegate().POLYDISPERSE_FUNCTIONS.index(array_caption)) |
---|
| 2499 | widget.blockSignals(False) |
---|
[aca8418] | 2500 | |
---|
[8222f171] | 2501 | # Invoke the file reader |
---|
| 2502 | self.onPolyComboIndexChange(array_caption, row_index) |
---|
| 2503 | |
---|
[aca8418] | 2504 | def onPolyComboIndexChange(self, combo_string, row_index): |
---|
| 2505 | """ |
---|
| 2506 | Modify polydisp. defaults on function choice |
---|
| 2507 | """ |
---|
[144ec831] | 2508 | # Get npts/nsigs for current selection |
---|
[aca8418] | 2509 | param = self.model_parameters.form_volume_parameters[row_index] |
---|
[e43fc91] | 2510 | file_index = self._poly_model.index(row_index, self.lstPoly.itemDelegate().poly_function) |
---|
| 2511 | combo_box = self.lstPoly.indexWidget(file_index) |
---|
[aca8418] | 2512 | |
---|
[919d47c] | 2513 | def updateFunctionCaption(row): |
---|
| 2514 | # Utility function for update of polydispersity function name in the main model |
---|
[00b7ddf0] | 2515 | if not self.isCheckable(row): |
---|
| 2516 | return |
---|
[1643d8ed] | 2517 | param_name = str(self._model_model.item(row, 0).text()) |
---|
[919d47c] | 2518 | if param_name != param.name: |
---|
| 2519 | return |
---|
[144ec831] | 2520 | # Modify the param value |
---|
[906e0c7] | 2521 | if self.has_error_column: |
---|
| 2522 | # err column changes the indexing |
---|
| 2523 | self._model_model.item(row, 0).child(0).child(0,5).setText(combo_string) |
---|
| 2524 | else: |
---|
| 2525 | self._model_model.item(row, 0).child(0).child(0,4).setText(combo_string) |
---|
[919d47c] | 2526 | |
---|
[aca8418] | 2527 | if combo_string == 'array': |
---|
| 2528 | try: |
---|
[e43fc91] | 2529 | self.loadPolydispArray(row_index) |
---|
[919d47c] | 2530 | # Update main model for display |
---|
| 2531 | self.iterateOverModel(updateFunctionCaption) |
---|
[e43fc91] | 2532 | # disable the row |
---|
| 2533 | lo = self.lstPoly.itemDelegate().poly_pd |
---|
| 2534 | hi = self.lstPoly.itemDelegate().poly_function |
---|
[b3e8629] | 2535 | [self._poly_model.item(row_index, i).setEnabled(False) for i in range(lo, hi)] |
---|
[aca8418] | 2536 | return |
---|
[e43fc91] | 2537 | except IOError: |
---|
[8222f171] | 2538 | combo_box.setCurrentIndex(self.orig_poly_index) |
---|
[e43fc91] | 2539 | # Pass for cancel/bad read |
---|
| 2540 | pass |
---|
[aca8418] | 2541 | |
---|
| 2542 | # Enable the row in case it was disabled by Array |
---|
[919d47c] | 2543 | self._poly_model.blockSignals(True) |
---|
[e43fc91] | 2544 | max_range = self.lstPoly.itemDelegate().poly_filename |
---|
[b3e8629] | 2545 | [self._poly_model.item(row_index, i).setEnabled(True) for i in range(7)] |
---|
[e43fc91] | 2546 | file_index = self._poly_model.index(row_index, self.lstPoly.itemDelegate().poly_filename) |
---|
[b3e8629] | 2547 | self._poly_model.setData(file_index, "") |
---|
[919d47c] | 2548 | self._poly_model.blockSignals(False) |
---|
[aca8418] | 2549 | |
---|
[8eaa101] | 2550 | npts_index = self._poly_model.index(row_index, self.lstPoly.itemDelegate().poly_npts) |
---|
| 2551 | nsigs_index = self._poly_model.index(row_index, self.lstPoly.itemDelegate().poly_nsigs) |
---|
[aca8418] | 2552 | |
---|
| 2553 | npts = POLYDISPERSITY_MODELS[str(combo_string)].default['npts'] |
---|
| 2554 | nsigs = POLYDISPERSITY_MODELS[str(combo_string)].default['nsigmas'] |
---|
| 2555 | |
---|
[b3e8629] | 2556 | self._poly_model.setData(npts_index, npts) |
---|
| 2557 | self._poly_model.setData(nsigs_index, nsigs) |
---|
[aca8418] | 2558 | |
---|
[919d47c] | 2559 | self.iterateOverModel(updateFunctionCaption) |
---|
[8222f171] | 2560 | self.orig_poly_index = combo_box.currentIndex() |
---|
[919d47c] | 2561 | |
---|
[e43fc91] | 2562 | def loadPolydispArray(self, row_index): |
---|
[aca8418] | 2563 | """ |
---|
| 2564 | Show the load file dialog and loads requested data into state |
---|
| 2565 | """ |
---|
[4992ff2] | 2566 | datafile = QtWidgets.QFileDialog.getOpenFileName( |
---|
| 2567 | self, "Choose a weight file", "", "All files (*.*)", None, |
---|
[fbfc488] | 2568 | QtWidgets.QFileDialog.DontUseNativeDialog)[0] |
---|
[72f4834] | 2569 | |
---|
[fbfc488] | 2570 | if not datafile: |
---|
[aca8418] | 2571 | logging.info("No weight data chosen.") |
---|
[1643d8ed] | 2572 | raise IOError |
---|
[72f4834] | 2573 | |
---|
[aca8418] | 2574 | values = [] |
---|
| 2575 | weights = [] |
---|
[919d47c] | 2576 | def appendData(data_tuple): |
---|
| 2577 | """ |
---|
| 2578 | Fish out floats from a tuple of strings |
---|
| 2579 | """ |
---|
| 2580 | try: |
---|
| 2581 | values.append(float(data_tuple[0])) |
---|
| 2582 | weights.append(float(data_tuple[1])) |
---|
| 2583 | except (ValueError, IndexError): |
---|
| 2584 | # just pass through if line with bad data |
---|
| 2585 | return |
---|
| 2586 | |
---|
[aca8418] | 2587 | with open(datafile, 'r') as column_file: |
---|
| 2588 | column_data = [line.rstrip().split() for line in column_file.readlines()] |
---|
[919d47c] | 2589 | [appendData(line) for line in column_data] |
---|
[aca8418] | 2590 | |
---|
[1643d8ed] | 2591 | # If everything went well - update the sasmodel values |
---|
[aca8418] | 2592 | self.disp_model = POLYDISPERSITY_MODELS['array']() |
---|
| 2593 | self.disp_model.set_weights(np.array(values), np.array(weights)) |
---|
[e43fc91] | 2594 | # + update the cell with filename |
---|
| 2595 | fname = os.path.basename(str(datafile)) |
---|
| 2596 | fname_index = self._poly_model.index(row_index, self.lstPoly.itemDelegate().poly_filename) |
---|
[b3e8629] | 2597 | self._poly_model.setData(fname_index, fname) |
---|
[aca8418] | 2598 | |
---|
[60af928] | 2599 | def setMagneticModel(self): |
---|
| 2600 | """ |
---|
| 2601 | Set magnetism values on model |
---|
| 2602 | """ |
---|
[86f88d1] | 2603 | if not self.model_parameters: |
---|
| 2604 | return |
---|
| 2605 | self._magnet_model.clear() |
---|
[aca8418] | 2606 | [self.addCheckedMagneticListToModel(param, self._magnet_model) for param in \ |
---|
[06b0138] | 2607 | self.model_parameters.call_parameters if param.type == 'magnetic'] |
---|
[4d457df] | 2608 | FittingUtilities.addHeadersToModel(self._magnet_model) |
---|
[60af928] | 2609 | |
---|
[0d13814] | 2610 | def shellNamesList(self): |
---|
| 2611 | """ |
---|
| 2612 | Returns list of names of all multi-shell parameters |
---|
| 2613 | E.g. for sld[n], radius[n], n=1..3 it will return |
---|
| 2614 | [sld1, sld2, sld3, radius1, radius2, radius3] |
---|
| 2615 | """ |
---|
| 2616 | multi_names = [p.name[:p.name.index('[')] for p in self.model_parameters.iq_parameters if '[' in p.name] |
---|
| 2617 | top_index = self.kernel_module.multiplicity_info.number |
---|
| 2618 | shell_names = [] |
---|
[b3e8629] | 2619 | for i in range(1, top_index+1): |
---|
[0d13814] | 2620 | for name in multi_names: |
---|
| 2621 | shell_names.append(name+str(i)) |
---|
| 2622 | return shell_names |
---|
| 2623 | |
---|
[aca8418] | 2624 | def addCheckedMagneticListToModel(self, param, model): |
---|
| 2625 | """ |
---|
| 2626 | Wrapper for model update with a subset of magnetic parameters |
---|
| 2627 | """ |
---|
[0d13814] | 2628 | if param.name[param.name.index(':')+1:] in self.shell_names: |
---|
| 2629 | # check if two-digit shell number |
---|
| 2630 | try: |
---|
| 2631 | shell_index = int(param.name[-2:]) |
---|
| 2632 | except ValueError: |
---|
| 2633 | shell_index = int(param.name[-1:]) |
---|
| 2634 | |
---|
| 2635 | if shell_index > self.current_shell_displayed: |
---|
| 2636 | return |
---|
| 2637 | |
---|
[aca8418] | 2638 | checked_list = [param.name, |
---|
| 2639 | str(param.default), |
---|
| 2640 | str(param.limits[0]), |
---|
| 2641 | str(param.limits[1]), |
---|
| 2642 | param.units] |
---|
| 2643 | |
---|
| 2644 | FittingUtilities.addCheckedListToModel(model, checked_list) |
---|
| 2645 | |
---|
[fd1ae6d1] | 2646 | def enableStructureFactorControl(self, structure_factor): |
---|
[cd31251] | 2647 | """ |
---|
| 2648 | Add structure factors to the list of parameters |
---|
| 2649 | """ |
---|
[fd1ae6d1] | 2650 | if self.kernel_module.is_form_factor or structure_factor == 'None': |
---|
[cd31251] | 2651 | self.enableStructureCombo() |
---|
| 2652 | else: |
---|
| 2653 | self.disableStructureCombo() |
---|
| 2654 | |
---|
[60af928] | 2655 | def addExtraShells(self): |
---|
| 2656 | """ |
---|
[f46f6dc] | 2657 | Add a combobox for multiple shell display |
---|
[60af928] | 2658 | """ |
---|
[4d457df] | 2659 | param_name, param_length = FittingUtilities.getMultiplicity(self.model_parameters) |
---|
[f46f6dc] | 2660 | |
---|
| 2661 | if param_length == 0: |
---|
| 2662 | return |
---|
| 2663 | |
---|
[6f7f652] | 2664 | # cell 1: variable name |
---|
[f46f6dc] | 2665 | item1 = QtGui.QStandardItem(param_name) |
---|
| 2666 | |
---|
[4992ff2] | 2667 | func = QtWidgets.QComboBox() |
---|
[b1e36a3] | 2668 | # Available range of shells displayed in the combobox |
---|
[b3e8629] | 2669 | func.addItems([str(i) for i in range(param_length+1)]) |
---|
[a9b568c] | 2670 | |
---|
[b1e36a3] | 2671 | # Respond to index change |
---|
[86f88d1] | 2672 | func.currentIndexChanged.connect(self.modifyShellsInList) |
---|
[60af928] | 2673 | |
---|
[6f7f652] | 2674 | # cell 2: combobox |
---|
[f46f6dc] | 2675 | item2 = QtGui.QStandardItem() |
---|
| 2676 | self._model_model.appendRow([item1, item2]) |
---|
[60af928] | 2677 | |
---|
[6f7f652] | 2678 | # Beautify the row: span columns 2-4 |
---|
[60af928] | 2679 | shell_row = self._model_model.rowCount() |
---|
[f46f6dc] | 2680 | shell_index = self._model_model.index(shell_row-1, 1) |
---|
[86f88d1] | 2681 | |
---|
[4d457df] | 2682 | self.lstParams.setIndexWidget(shell_index, func) |
---|
[86f88d1] | 2683 | self._last_model_row = self._model_model.rowCount() |
---|
| 2684 | |
---|
[a9b568c] | 2685 | # Set the index to the state-kept value |
---|
| 2686 | func.setCurrentIndex(self.current_shell_displayed |
---|
| 2687 | if self.current_shell_displayed < func.count() else 0) |
---|
| 2688 | |
---|
[86f88d1] | 2689 | def modifyShellsInList(self, index): |
---|
| 2690 | """ |
---|
| 2691 | Add/remove additional multishell parameters |
---|
| 2692 | """ |
---|
| 2693 | # Find row location of the combobox |
---|
| 2694 | last_row = self._last_model_row |
---|
| 2695 | remove_rows = self._model_model.rowCount() - last_row |
---|
| 2696 | |
---|
| 2697 | if remove_rows > 1: |
---|
| 2698 | self._model_model.removeRows(last_row, remove_rows) |
---|
| 2699 | |
---|
[4d457df] | 2700 | FittingUtilities.addShellsToModel(self.model_parameters, self._model_model, index) |
---|
[a9b568c] | 2701 | self.current_shell_displayed = index |
---|
[60af928] | 2702 | |
---|
[0d13814] | 2703 | # Update relevant models |
---|
| 2704 | self.setPolyModel() |
---|
| 2705 | self.setMagneticModel() |
---|
| 2706 | |
---|
[14ec91c5] | 2707 | def setFittingStarted(self): |
---|
| 2708 | """ |
---|
[ded5e77] | 2709 | Set buttion caption on fitting start |
---|
[14ec91c5] | 2710 | """ |
---|
[ded5e77] | 2711 | # Notify the user that fitting is being run |
---|
| 2712 | # Allow for stopping the job |
---|
| 2713 | self.cmdFit.setStyleSheet('QPushButton {color: red;}') |
---|
| 2714 | self.cmdFit.setText('Stop fit') |
---|
[14ec91c5] | 2715 | |
---|
| 2716 | def setFittingStopped(self): |
---|
| 2717 | """ |
---|
[ded5e77] | 2718 | Set button caption on fitting stop |
---|
[14ec91c5] | 2719 | """ |
---|
[ded5e77] | 2720 | # Notify the user that fitting is available |
---|
| 2721 | self.cmdFit.setStyleSheet('QPushButton {color: black;}') |
---|
[14ec91c5] | 2722 | self.cmdFit.setText("Fit") |
---|
[ded5e77] | 2723 | self.fit_started = False |
---|
[14ec91c5] | 2724 | |
---|
[672b8ab] | 2725 | def readFitPage(self, fp): |
---|
| 2726 | """ |
---|
| 2727 | Read in state from a fitpage object and update GUI |
---|
| 2728 | """ |
---|
| 2729 | assert isinstance(fp, FitPage) |
---|
| 2730 | # Main tab info |
---|
| 2731 | self.logic.data.filename = fp.filename |
---|
| 2732 | self.data_is_loaded = fp.data_is_loaded |
---|
| 2733 | self.chkPolydispersity.setCheckState(fp.is_polydisperse) |
---|
| 2734 | self.chkMagnetism.setCheckState(fp.is_magnetic) |
---|
| 2735 | self.chk2DView.setCheckState(fp.is2D) |
---|
| 2736 | |
---|
| 2737 | # Update the comboboxes |
---|
| 2738 | self.cbCategory.setCurrentIndex(self.cbCategory.findText(fp.current_category)) |
---|
| 2739 | self.cbModel.setCurrentIndex(self.cbModel.findText(fp.current_model)) |
---|
| 2740 | if fp.current_factor: |
---|
| 2741 | self.cbStructureFactor.setCurrentIndex(self.cbStructureFactor.findText(fp.current_factor)) |
---|
| 2742 | |
---|
| 2743 | self.chi2 = fp.chi2 |
---|
| 2744 | |
---|
| 2745 | # Options tab |
---|
| 2746 | self.q_range_min = fp.fit_options[fp.MIN_RANGE] |
---|
| 2747 | self.q_range_max = fp.fit_options[fp.MAX_RANGE] |
---|
| 2748 | self.npts = fp.fit_options[fp.NPTS] |
---|
| 2749 | self.log_points = fp.fit_options[fp.LOG_POINTS] |
---|
| 2750 | self.weighting = fp.fit_options[fp.WEIGHTING] |
---|
| 2751 | |
---|
| 2752 | # Models |
---|
[d60da0c] | 2753 | self._model_model = fp.model_model |
---|
| 2754 | self._poly_model = fp.poly_model |
---|
| 2755 | self._magnet_model = fp.magnetism_model |
---|
[672b8ab] | 2756 | |
---|
| 2757 | # Resolution tab |
---|
| 2758 | smearing = fp.smearing_options[fp.SMEARING_OPTION] |
---|
| 2759 | accuracy = fp.smearing_options[fp.SMEARING_ACCURACY] |
---|
| 2760 | smearing_min = fp.smearing_options[fp.SMEARING_MIN] |
---|
| 2761 | smearing_max = fp.smearing_options[fp.SMEARING_MAX] |
---|
| 2762 | self.smearing_widget.setState(smearing, accuracy, smearing_min, smearing_max) |
---|
| 2763 | |
---|
| 2764 | # TODO: add polidyspersity and magnetism |
---|
| 2765 | |
---|
| 2766 | def saveToFitPage(self, fp): |
---|
| 2767 | """ |
---|
| 2768 | Write current state to the given fitpage |
---|
| 2769 | """ |
---|
| 2770 | assert isinstance(fp, FitPage) |
---|
| 2771 | |
---|
| 2772 | # Main tab info |
---|
| 2773 | fp.filename = self.logic.data.filename |
---|
| 2774 | fp.data_is_loaded = self.data_is_loaded |
---|
| 2775 | fp.is_polydisperse = self.chkPolydispersity.isChecked() |
---|
| 2776 | fp.is_magnetic = self.chkMagnetism.isChecked() |
---|
| 2777 | fp.is2D = self.chk2DView.isChecked() |
---|
| 2778 | fp.data = self.data |
---|
| 2779 | |
---|
| 2780 | # Use current models - they contain all the required parameters |
---|
| 2781 | fp.model_model = self._model_model |
---|
| 2782 | fp.poly_model = self._poly_model |
---|
| 2783 | fp.magnetism_model = self._magnet_model |
---|
| 2784 | |
---|
| 2785 | if self.cbCategory.currentIndex() != 0: |
---|
| 2786 | fp.current_category = str(self.cbCategory.currentText()) |
---|
| 2787 | fp.current_model = str(self.cbModel.currentText()) |
---|
| 2788 | |
---|
| 2789 | if self.cbStructureFactor.isEnabled() and self.cbStructureFactor.currentIndex() != 0: |
---|
| 2790 | fp.current_factor = str(self.cbStructureFactor.currentText()) |
---|
| 2791 | else: |
---|
| 2792 | fp.current_factor = '' |
---|
| 2793 | |
---|
| 2794 | fp.chi2 = self.chi2 |
---|
[6dbff18] | 2795 | fp.main_params_to_fit = self.main_params_to_fit |
---|
| 2796 | fp.poly_params_to_fit = self.poly_params_to_fit |
---|
| 2797 | fp.magnet_params_to_fit = self.magnet_params_to_fit |
---|
[6964d44] | 2798 | fp.kernel_module = self.kernel_module |
---|
[672b8ab] | 2799 | |
---|
[6ff2eb3] | 2800 | # Algorithm options |
---|
| 2801 | # fp.algorithm = self.parent.fit_options.selected_id |
---|
| 2802 | |
---|
[672b8ab] | 2803 | # Options tab |
---|
| 2804 | fp.fit_options[fp.MIN_RANGE] = self.q_range_min |
---|
| 2805 | fp.fit_options[fp.MAX_RANGE] = self.q_range_max |
---|
| 2806 | fp.fit_options[fp.NPTS] = self.npts |
---|
| 2807 | #fp.fit_options[fp.NPTS_FIT] = self.npts_fit |
---|
| 2808 | fp.fit_options[fp.LOG_POINTS] = self.log_points |
---|
| 2809 | fp.fit_options[fp.WEIGHTING] = self.weighting |
---|
| 2810 | |
---|
| 2811 | # Resolution tab |
---|
| 2812 | smearing, accuracy, smearing_min, smearing_max = self.smearing_widget.state() |
---|
| 2813 | fp.smearing_options[fp.SMEARING_OPTION] = smearing |
---|
| 2814 | fp.smearing_options[fp.SMEARING_ACCURACY] = accuracy |
---|
| 2815 | fp.smearing_options[fp.SMEARING_MIN] = smearing_min |
---|
| 2816 | fp.smearing_options[fp.SMEARING_MAX] = smearing_max |
---|
| 2817 | |
---|
| 2818 | # TODO: add polidyspersity and magnetism |
---|
| 2819 | |
---|
[00b3b40] | 2820 | |
---|
| 2821 | def updateUndo(self): |
---|
| 2822 | """ |
---|
| 2823 | Create a new state page and add it to the stack |
---|
| 2824 | """ |
---|
| 2825 | if self.undo_supported: |
---|
| 2826 | self.pushFitPage(self.currentState()) |
---|
| 2827 | |
---|
[672b8ab] | 2828 | def currentState(self): |
---|
| 2829 | """ |
---|
| 2830 | Return fit page with current state |
---|
| 2831 | """ |
---|
| 2832 | new_page = FitPage() |
---|
| 2833 | self.saveToFitPage(new_page) |
---|
| 2834 | |
---|
| 2835 | return new_page |
---|
| 2836 | |
---|
| 2837 | def pushFitPage(self, new_page): |
---|
| 2838 | """ |
---|
| 2839 | Add a new fit page object with current state |
---|
| 2840 | """ |
---|
[6011788] | 2841 | self.page_stack.append(new_page) |
---|
[672b8ab] | 2842 | |
---|
| 2843 | def popFitPage(self): |
---|
| 2844 | """ |
---|
| 2845 | Remove top fit page from stack |
---|
| 2846 | """ |
---|
[6011788] | 2847 | if self.page_stack: |
---|
| 2848 | self.page_stack.pop() |
---|
[672b8ab] | 2849 | |
---|
[57be490] | 2850 | def getReport(self): |
---|
| 2851 | """ |
---|
| 2852 | Create and return HTML report with parameters and charts |
---|
| 2853 | """ |
---|
| 2854 | index = None |
---|
| 2855 | if self.all_data: |
---|
| 2856 | index = self.all_data[self.data_index] |
---|
| 2857 | report_logic = ReportPageLogic(self, |
---|
| 2858 | kernel_module=self.kernel_module, |
---|
| 2859 | data=self.data, |
---|
| 2860 | index=index, |
---|
| 2861 | model=self._model_model) |
---|
| 2862 | |
---|
| 2863 | return report_logic.reportList() |
---|
| 2864 | |
---|
| 2865 | def savePageState(self): |
---|
| 2866 | """ |
---|
| 2867 | Create and serialize local PageState |
---|
| 2868 | """ |
---|
| 2869 | from sas.sascalc.fit.pagestate import Reader |
---|
| 2870 | model = self.kernel_module |
---|
| 2871 | |
---|
| 2872 | # Old style PageState object |
---|
| 2873 | state = PageState(model=model, data=self.data) |
---|
| 2874 | |
---|
| 2875 | # Add parameter data to the state |
---|
| 2876 | self.getCurrentFitState(state) |
---|
| 2877 | |
---|
| 2878 | # Create the filewriter, aptly named 'Reader' |
---|
| 2879 | state_reader = Reader(self.loadPageStateCallback) |
---|
| 2880 | filepath = self.saveAsAnalysisFile() |
---|
[10fee37] | 2881 | if filepath is None or filepath == "": |
---|
[57be490] | 2882 | return |
---|
| 2883 | state_reader.write(filename=filepath, fitstate=state) |
---|
| 2884 | pass |
---|
| 2885 | |
---|
| 2886 | def saveAsAnalysisFile(self): |
---|
| 2887 | """ |
---|
| 2888 | Show the save as... dialog and return the chosen filepath |
---|
| 2889 | """ |
---|
| 2890 | default_name = "FitPage"+str(self.tab_id)+".fitv" |
---|
| 2891 | |
---|
| 2892 | wildcard = "fitv files (*.fitv)" |
---|
| 2893 | kwargs = { |
---|
| 2894 | 'caption' : 'Save As', |
---|
| 2895 | 'directory' : default_name, |
---|
| 2896 | 'filter' : wildcard, |
---|
| 2897 | 'parent' : None, |
---|
| 2898 | } |
---|
| 2899 | # Query user for filename. |
---|
| 2900 | filename_tuple = QtWidgets.QFileDialog.getSaveFileName(**kwargs) |
---|
| 2901 | filename = filename_tuple[0] |
---|
| 2902 | return filename |
---|
| 2903 | |
---|
| 2904 | def loadPageStateCallback(self,state=None, datainfo=None, format=None): |
---|
| 2905 | """ |
---|
| 2906 | This is a callback method called from the CANSAS reader. |
---|
| 2907 | We need the instance of this reader only for writing out a file, |
---|
| 2908 | so there's nothing here. |
---|
| 2909 | Until Load Analysis is implemented, that is. |
---|
| 2910 | """ |
---|
| 2911 | pass |
---|
| 2912 | |
---|
| 2913 | def loadPageState(self, pagestate=None): |
---|
| 2914 | """ |
---|
| 2915 | Load the PageState object and update the current widget |
---|
| 2916 | """ |
---|
| 2917 | pass |
---|
| 2918 | |
---|
| 2919 | def getCurrentFitState(self, state=None): |
---|
| 2920 | """ |
---|
| 2921 | Store current state for fit_page |
---|
| 2922 | """ |
---|
| 2923 | # save model option |
---|
| 2924 | #if self.model is not None: |
---|
| 2925 | # self.disp_list = self.getDispParamList() |
---|
| 2926 | # state.disp_list = copy.deepcopy(self.disp_list) |
---|
| 2927 | # #state.model = self.model.clone() |
---|
| 2928 | |
---|
| 2929 | # Comboboxes |
---|
| 2930 | state.categorycombobox = self.cbCategory.currentText() |
---|
| 2931 | state.formfactorcombobox = self.cbModel.currentText() |
---|
| 2932 | if self.cbStructureFactor.isEnabled(): |
---|
[10fee37] | 2933 | state.structurecombobox = self.cbStructureFactor.currentText() |
---|
[57be490] | 2934 | state.tcChi = self.chi2 |
---|
| 2935 | |
---|
| 2936 | state.enable2D = self.is2D |
---|
| 2937 | |
---|
| 2938 | #state.weights = copy.deepcopy(self.weights) |
---|
| 2939 | # save data |
---|
| 2940 | state.data = copy.deepcopy(self.data) |
---|
| 2941 | |
---|
| 2942 | # save plotting range |
---|
| 2943 | state.qmin = self.q_range_min |
---|
| 2944 | state.qmax = self.q_range_max |
---|
| 2945 | state.npts = self.npts |
---|
| 2946 | |
---|
| 2947 | # self.state.enable_disp = self.enable_disp.GetValue() |
---|
| 2948 | # self.state.disable_disp = self.disable_disp.GetValue() |
---|
| 2949 | |
---|
| 2950 | # self.state.enable_smearer = \ |
---|
| 2951 | # copy.deepcopy(self.enable_smearer.GetValue()) |
---|
| 2952 | # self.state.disable_smearer = \ |
---|
| 2953 | # copy.deepcopy(self.disable_smearer.GetValue()) |
---|
| 2954 | |
---|
| 2955 | #self.state.pinhole_smearer = \ |
---|
| 2956 | # copy.deepcopy(self.pinhole_smearer.GetValue()) |
---|
| 2957 | #self.state.slit_smearer = copy.deepcopy(self.slit_smearer.GetValue()) |
---|
| 2958 | #self.state.dI_noweight = copy.deepcopy(self.dI_noweight.GetValue()) |
---|
| 2959 | #self.state.dI_didata = copy.deepcopy(self.dI_didata.GetValue()) |
---|
| 2960 | #self.state.dI_sqrdata = copy.deepcopy(self.dI_sqrdata.GetValue()) |
---|
| 2961 | #self.state.dI_idata = copy.deepcopy(self.dI_idata.GetValue()) |
---|
| 2962 | |
---|
| 2963 | p = self.model_parameters |
---|
| 2964 | # save checkbutton state and txtcrtl values |
---|
[10fee37] | 2965 | state.parameters = FittingUtilities.getStandardParam(self._model_model) |
---|
| 2966 | state.orientation_params_disp = FittingUtilities.getOrientationParam(self.kernel_module) |
---|
[57be490] | 2967 | |
---|
| 2968 | #self._copy_parameters_state(self.orientation_params_disp, self.state.orientation_params_disp) |
---|
| 2969 | #self._copy_parameters_state(self.parameters, self.state.parameters) |
---|
| 2970 | #self._copy_parameters_state(self.fittable_param, self.state.fittable_param) |
---|
| 2971 | #self._copy_parameters_state(self.fixed_param, self.state.fixed_param) |
---|
| 2972 | |
---|
[8e2cd79] | 2973 | def onParameterCopy(self, format=None): |
---|
| 2974 | """ |
---|
| 2975 | Copy current parameters into the clipboard |
---|
| 2976 | """ |
---|
| 2977 | # run a loop over all parameters and pull out |
---|
| 2978 | # first - regular params |
---|
| 2979 | param_list = [] |
---|
| 2980 | def gatherParams(row): |
---|
| 2981 | """ |
---|
| 2982 | Create list of main parameters based on _model_model |
---|
| 2983 | """ |
---|
| 2984 | param_name = str(self._model_model.item(row, 0).text()) |
---|
| 2985 | param_checked = str(self._model_model.item(row, 0).checkState() == QtCore.Qt.Checked) |
---|
| 2986 | param_value = str(self._model_model.item(row, 1).text()) |
---|
| 2987 | param_error = None |
---|
| 2988 | column_offset = 0 |
---|
| 2989 | if self.has_error_column: |
---|
| 2990 | param_error = str(self._model_model.item(row, 2).text()) |
---|
| 2991 | column_offset = 1 |
---|
| 2992 | param_min = str(self._model_model.item(row, 2+column_offset).text()) |
---|
| 2993 | param_max = str(self._model_model.item(row, 3+column_offset).text()) |
---|
| 2994 | param_list.append([param_name, param_checked, param_value, param_error, param_min, param_max]) |
---|
| 2995 | |
---|
| 2996 | def gatherPolyParams(row): |
---|
| 2997 | """ |
---|
| 2998 | Create list of polydisperse parameters based on _poly_model |
---|
| 2999 | """ |
---|
| 3000 | param_name = str(self._poly_model.item(row, 0).text()).split()[-1] |
---|
| 3001 | param_checked = str(self._poly_model.item(row, 0).checkState() == QtCore.Qt.Checked) |
---|
| 3002 | param_value = str(self._poly_model.item(row, 1).text()) |
---|
| 3003 | param_error = None |
---|
| 3004 | column_offset = 0 |
---|
| 3005 | if self.has_poly_error_column: |
---|
| 3006 | param_error = str(self._poly_model.item(row, 2).text()) |
---|
| 3007 | column_offset = 1 |
---|
| 3008 | param_min = str(self._poly_model.item(row, 2+column_offset).text()) |
---|
| 3009 | param_max = str(self._poly_model.item(row, 3+column_offset).text()) |
---|
| 3010 | param_npts = str(self._poly_model.item(row, 4+column_offset).text()) |
---|
| 3011 | param_nsigs = str(self._poly_model.item(row, 5+column_offset).text()) |
---|
| 3012 | param_fun = str(self._poly_model.item(row, 6+column_offset).text()).rstrip() |
---|
| 3013 | # width |
---|
| 3014 | name = param_name+".width" |
---|
| 3015 | param_list.append([name, param_checked, param_value, param_error, |
---|
| 3016 | param_npts, param_nsigs, param_min, param_max, param_fun]) |
---|
| 3017 | |
---|
| 3018 | def gatherMagnetParams(row): |
---|
| 3019 | """ |
---|
| 3020 | Create list of magnetic parameters based on _magnet_model |
---|
| 3021 | """ |
---|
| 3022 | param_name = str(self._magnet_model.item(row, 0).text()) |
---|
| 3023 | param_checked = str(self._magnet_model.item(row, 0).checkState() == QtCore.Qt.Checked) |
---|
| 3024 | param_value = str(self._magnet_model.item(row, 1).text()) |
---|
| 3025 | param_error = None |
---|
| 3026 | column_offset = 0 |
---|
| 3027 | if self.has_magnet_error_column: |
---|
| 3028 | param_error = str(self._magnet_model.item(row, 2).text()) |
---|
| 3029 | column_offset = 1 |
---|
| 3030 | param_min = str(self._magnet_model.item(row, 2+column_offset).text()) |
---|
| 3031 | param_max = str(self._magnet_model.item(row, 3+column_offset).text()) |
---|
| 3032 | param_list.append([param_name, param_checked, param_value, param_error, param_min, param_max]) |
---|
| 3033 | |
---|
| 3034 | self.iterateOverModel(gatherParams) |
---|
| 3035 | if self.chkPolydispersity.isChecked(): |
---|
| 3036 | self.iterateOverPolyModel(gatherPolyParams) |
---|
| 3037 | if self.chkMagnetism.isChecked() and self.chkMagnetism.isEnabled(): |
---|
[b259485] | 3038 | self.iterateOverMagnetModel(gatherMagnetParams) |
---|
[8e2cd79] | 3039 | |
---|
| 3040 | if format=="": |
---|
| 3041 | formatted_output = FittingUtilities.formatParameters(param_list) |
---|
| 3042 | elif format == "Excel": |
---|
| 3043 | formatted_output = FittingUtilities.formatParametersExcel(param_list) |
---|
| 3044 | elif format == "Latex": |
---|
| 3045 | formatted_output = FittingUtilities.formatParametersLatex(param_list) |
---|
| 3046 | else: |
---|
| 3047 | raise AttributeError("Bad format specifier.") |
---|
| 3048 | |
---|
| 3049 | # Dump formatted_output to the clipboard |
---|
| 3050 | cb = QtWidgets.QApplication.clipboard() |
---|
| 3051 | cb.setText(formatted_output) |
---|
| 3052 | |
---|
| 3053 | def onParameterPaste(self): |
---|
| 3054 | """ |
---|
| 3055 | Use the clipboard to update fit state |
---|
| 3056 | """ |
---|
| 3057 | # Check if the clipboard contains right stuff |
---|
| 3058 | cb = QtWidgets.QApplication.clipboard() |
---|
| 3059 | cb_text = cb.text() |
---|
| 3060 | |
---|
| 3061 | context = {} |
---|
| 3062 | # put the text into dictionary |
---|
| 3063 | lines = cb_text.split(':') |
---|
| 3064 | if lines[0] != 'sasview_parameter_values': |
---|
| 3065 | return False |
---|
| 3066 | for line in lines[1:-1]: |
---|
| 3067 | if len(line) != 0: |
---|
| 3068 | item = line.split(',') |
---|
| 3069 | check = item[1] |
---|
| 3070 | name = item[0] |
---|
| 3071 | value = item[2] |
---|
| 3072 | # Transfer the text to content[dictionary] |
---|
| 3073 | context[name] = [check, value] |
---|
| 3074 | |
---|
| 3075 | # limits |
---|
| 3076 | limit_lo = item[3] |
---|
| 3077 | context[name].append(limit_lo) |
---|
| 3078 | limit_hi = item[4] |
---|
| 3079 | context[name].append(limit_hi) |
---|
| 3080 | |
---|
| 3081 | # Polydisp |
---|
| 3082 | if len(item) > 5: |
---|
| 3083 | value = item[5] |
---|
| 3084 | context[name].append(value) |
---|
| 3085 | try: |
---|
| 3086 | value = item[6] |
---|
| 3087 | context[name].append(value) |
---|
| 3088 | value = item[7] |
---|
| 3089 | context[name].append(value) |
---|
| 3090 | except IndexError: |
---|
| 3091 | pass |
---|
| 3092 | |
---|
| 3093 | self.updateFullModel(context) |
---|
| 3094 | self.updateFullPolyModel(context) |
---|
| 3095 | |
---|
| 3096 | def updateFullModel(self, param_dict): |
---|
| 3097 | """ |
---|
| 3098 | Update the model with new parameters |
---|
| 3099 | """ |
---|
| 3100 | assert isinstance(param_dict, dict) |
---|
| 3101 | if not dict: |
---|
| 3102 | return |
---|
| 3103 | |
---|
| 3104 | def updateFittedValues(row): |
---|
| 3105 | # Utility function for main model update |
---|
| 3106 | # internal so can use closure for param_dict |
---|
| 3107 | param_name = str(self._model_model.item(row, 0).text()) |
---|
| 3108 | if param_name not in list(param_dict.keys()): |
---|
| 3109 | return |
---|
| 3110 | # checkbox state |
---|
| 3111 | param_checked = QtCore.Qt.Checked if param_dict[param_name][0] == "True" else QtCore.Qt.Unchecked |
---|
| 3112 | self._model_model.item(row, 0).setCheckState(param_checked) |
---|
| 3113 | |
---|
| 3114 | # modify the param value |
---|
| 3115 | param_repr = GuiUtils.formatNumber(param_dict[param_name][1], high=True) |
---|
| 3116 | self._model_model.item(row, 1).setText(param_repr) |
---|
| 3117 | |
---|
| 3118 | # Potentially the error column |
---|
| 3119 | ioffset = 0 |
---|
| 3120 | if len(param_dict[param_name])>4 and self.has_error_column: |
---|
| 3121 | # error values are not editable - no need to update |
---|
| 3122 | #error_repr = GuiUtils.formatNumber(param_dict[param_name][2], high=True) |
---|
| 3123 | #self._model_model.item(row, 2).setText(error_repr) |
---|
| 3124 | ioffset = 1 |
---|
| 3125 | # min/max |
---|
| 3126 | param_repr = GuiUtils.formatNumber(param_dict[param_name][2+ioffset], high=True) |
---|
| 3127 | self._model_model.item(row, 2+ioffset).setText(param_repr) |
---|
| 3128 | param_repr = GuiUtils.formatNumber(param_dict[param_name][3+ioffset], high=True) |
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| 3129 | self._model_model.item(row, 3+ioffset).setText(param_repr) |
---|
| 3130 | |
---|
| 3131 | # block signals temporarily, so we don't end up |
---|
| 3132 | # updating charts with every single model change on the end of fitting |
---|
| 3133 | self._model_model.blockSignals(True) |
---|
| 3134 | self.iterateOverModel(updateFittedValues) |
---|
| 3135 | self._model_model.blockSignals(False) |
---|
| 3136 | |
---|
| 3137 | def updateFullPolyModel(self, param_dict): |
---|
| 3138 | """ |
---|
| 3139 | Update the polydispersity model with new parameters, create the errors column |
---|
| 3140 | """ |
---|
| 3141 | assert isinstance(param_dict, dict) |
---|
| 3142 | if not dict: |
---|
| 3143 | return |
---|
| 3144 | |
---|
| 3145 | def updateFittedValues(row): |
---|
| 3146 | # Utility function for main model update |
---|
| 3147 | # internal so can use closure for param_dict |
---|
| 3148 | if row >= self._poly_model.rowCount(): |
---|
| 3149 | return |
---|
| 3150 | param_name = str(self._poly_model.item(row, 0).text()).rsplit()[-1] + '.width' |
---|
| 3151 | if param_name not in list(param_dict.keys()): |
---|
| 3152 | return |
---|
| 3153 | # checkbox state |
---|
| 3154 | param_checked = QtCore.Qt.Checked if param_dict[param_name][0] == "True" else QtCore.Qt.Unchecked |
---|
| 3155 | self._poly_model.item(row,0).setCheckState(param_checked) |
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| 3156 | |
---|
| 3157 | # modify the param value |
---|
| 3158 | param_repr = GuiUtils.formatNumber(param_dict[param_name][1], high=True) |
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| 3159 | self._poly_model.item(row, 1).setText(param_repr) |
---|
| 3160 | |
---|
| 3161 | # Potentially the error column |
---|
| 3162 | ioffset = 0 |
---|
| 3163 | if len(param_dict[param_name])>4 and self.has_poly_error_column: |
---|
| 3164 | ioffset = 1 |
---|
| 3165 | # min |
---|
| 3166 | param_repr = GuiUtils.formatNumber(param_dict[param_name][2+ioffset], high=True) |
---|
| 3167 | self._poly_model.item(row, 2+ioffset).setText(param_repr) |
---|
| 3168 | # max |
---|
| 3169 | param_repr = GuiUtils.formatNumber(param_dict[param_name][3+ioffset], high=True) |
---|
| 3170 | self._poly_model.item(row, 3+ioffset).setText(param_repr) |
---|
| 3171 | # Npts |
---|
| 3172 | param_repr = GuiUtils.formatNumber(param_dict[param_name][4+ioffset], high=True) |
---|
| 3173 | self._poly_model.item(row, 4+ioffset).setText(param_repr) |
---|
| 3174 | # Nsigs |
---|
| 3175 | param_repr = GuiUtils.formatNumber(param_dict[param_name][5+ioffset], high=True) |
---|
| 3176 | self._poly_model.item(row, 5+ioffset).setText(param_repr) |
---|
| 3177 | |
---|
| 3178 | param_repr = GuiUtils.formatNumber(param_dict[param_name][5+ioffset], high=True) |
---|
| 3179 | self._poly_model.item(row, 5+ioffset).setText(param_repr) |
---|
| 3180 | |
---|
| 3181 | # block signals temporarily, so we don't end up |
---|
| 3182 | # updating charts with every single model change on the end of fitting |
---|
| 3183 | self._poly_model.blockSignals(True) |
---|
| 3184 | self.iterateOverPolyModel(updateFittedValues) |
---|
| 3185 | self._poly_model.blockSignals(False) |
---|
| 3186 | |
---|
[57be490] | 3187 | |
---|