source: sasview/src/sans/models/CoreShellEllipsoidModel.py @ 400155b

ESS_GUIESS_GUI_DocsESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_iss959ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalccostrafo411magnetic_scattrelease-4.1.1release-4.1.2release-4.2.2release_4.0.1ticket-1009ticket-1094-headlessticket-1242-2d-resolutionticket-1243ticket-1249ticket885unittest-saveload
Last change on this file since 400155b was 400155b, checked in by gonzalezm, 9 years ago

Implementing request from ticket 261 - default number of bins in Annulus [Phi View] is now 36 and the first bin is now centered at 0 degrees

  • Property mode set to 100644
File size: 7.0 KB
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1##############################################################################
2# This software was developed by the University of Tennessee as part of the
3# Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
4# project funded by the US National Science Foundation.
5#
6# If you use DANSE applications to do scientific research that leads to
7# publication, we ask that you acknowledge the use of the software with the
8# following sentence:
9#
10# This work benefited from DANSE software developed under NSF award DMR-0520547
11#
12# Copyright 2008-2011, University of Tennessee
13##############################################################################
14
15"""
16Provide functionality for a C extension model
17
18.. WARNING::
19
20   THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
21   DO NOT MODIFY THIS FILE, MODIFY
22   src\sans\models\include\spheroid.h
23   AND RE-RUN THE GENERATOR SCRIPT
24"""
25
26from sans.models.BaseComponent import BaseComponent
27from sans.models.sans_extension.c_models import CCoreShellEllipsoidModel
28
29def create_CoreShellEllipsoidModel():
30    """
31       Create a model instance
32    """
33    obj = CoreShellEllipsoidModel()
34    # CCoreShellEllipsoidModel.__init__(obj) is called by
35    # the CoreShellEllipsoidModel constructor
36    return obj
37
38class CoreShellEllipsoidModel(CCoreShellEllipsoidModel, BaseComponent):
39    """
40    Class that evaluates a CoreShellEllipsoidModel model.
41    This file was auto-generated from src\sans\models\include\spheroid.h.
42    Refer to that file and the structure it contains
43    for details of the model.
44   
45    List of default parameters:
46
47    * scale           = 1.0
48    * equat_core      = 200.0 [A]
49    * polar_core      = 20.0 [A]
50    * equat_shell     = 250.0 [A]
51    * polar_shell     = 30.0 [A]
52    * sld_core        = 2e-06 [1/A^(2)]
53    * sld_shell       = 1e-06 [1/A^(2)]
54    * sld_solvent     = 6.3e-06 [1/A^(2)]
55    * background      = 0.001 [1/cm]
56    * axis_theta      = 0.0 [deg]
57    * axis_phi        = 0.0 [deg]
58
59    """
60       
61    def __init__(self, multfactor=1):
62        """ Initialization """
63        self.__dict__ = {}
64       
65        # Initialize BaseComponent first, then sphere
66        BaseComponent.__init__(self)
67        #apply(CCoreShellEllipsoidModel.__init__, (self,))
68
69        CCoreShellEllipsoidModel.__init__(self)
70        self.is_multifunc = False
71                       
72        ## Name of the model
73        self.name = "CoreShellEllipsoidModel"
74        ## Model description
75        self.description = """
76        [SpheroidCoreShellModel] Calculates the form factor for an spheroid
77                ellipsoid particle with a core_shell structure.
78                The form factor is averaged over all possible
79                orientations of the ellipsoid such that P(q)
80                = scale*<f^2>/Vol + bkg, where f is the
81                single particle scattering amplitude.
82                [Parameters]:
83                equat_core = equatorial radius of core,
84                polar_core = polar radius of core,
85                equat_shell = equatorial radius of shell,
86                polar_shell = polar radius (revolution axis) of shell,
87                sld_core = SLD_core
88                sld_shell = SLD_shell
89                sld_solvent = SLD_solvent
90                background = Incoherent bkg
91                scale =scale
92                Note:It is the users' responsibility to ensure
93                that shell radii are larger than core radii.
94                oblate: polar radius < equatorial radius
95                prolate :  polar radius > equatorial radius
96        """
97       
98        ## Parameter details [units, min, max]
99        self.details = {}
100        self.details['scale'] = ['', None, None]
101        self.details['equat_core'] = ['[A]', None, None]
102        self.details['polar_core'] = ['[A]', None, None]
103        self.details['equat_shell'] = ['[A]', None, None]
104        self.details['polar_shell'] = ['[A]', None, None]
105        self.details['sld_core'] = ['[1/A^(2)]', None, None]
106        self.details['sld_shell'] = ['[1/A^(2)]', None, None]
107        self.details['sld_solvent'] = ['[1/A^(2)]', None, None]
108        self.details['background'] = ['[1/cm]', None, None]
109        self.details['axis_theta'] = ['[deg]', None, None]
110        self.details['axis_phi'] = ['[deg]', None, None]
111
112        ## fittable parameters
113        self.fixed = ['equat_core.width',
114                      'polar_core.width',
115                      'equat_shell.width',
116                      'polar_shell.width',
117                      'axis_phi.width',
118                      'axis_theta.width']
119       
120        ## non-fittable parameters
121        self.non_fittable = []
122       
123        ## parameters with orientation
124        self.orientation_params = ['axis_phi',
125                                   'axis_theta',
126                                   'axis_phi.width',
127                                   'axis_theta.width']
128
129        ## parameters with magnetism
130        self.magnetic_params = []
131
132        self.category = None
133        self.multiplicity_info = None
134       
135    def __setstate__(self, state):
136        """
137        restore the state of a model from pickle
138        """
139        self.__dict__, self.params, self.dispersion = state
140       
141    def __reduce_ex__(self, proto):
142        """
143        Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of
144        c model.
145        """
146        state = (self.__dict__, self.params, self.dispersion)
147        return (create_CoreShellEllipsoidModel, tuple(), state, None, None)
148       
149    def clone(self):
150        """ Return a identical copy of self """
151        return self._clone(CoreShellEllipsoidModel())   
152       
153    def run(self, x=0.0):
154        """
155        Evaluate the model
156       
157        :param x: input q, or [q,phi]
158       
159        :return: scattering function P(q)
160       
161        """
162        return CCoreShellEllipsoidModel.run(self, x)
163   
164    def runXY(self, x=0.0):
165        """
166        Evaluate the model in cartesian coordinates
167       
168        :param x: input q, or [qx, qy]
169       
170        :return: scattering function P(q)
171       
172        """
173        return CCoreShellEllipsoidModel.runXY(self, x)
174       
175    def evalDistribution(self, x):
176        """
177        Evaluate the model in cartesian coordinates
178       
179        :param x: input q[], or [qx[], qy[]]
180       
181        :return: scattering function P(q[])
182       
183        """
184        return CCoreShellEllipsoidModel.evalDistribution(self, x)
185       
186    def calculate_ER(self):
187        """
188        Calculate the effective radius for P(q)*S(q)
189       
190        :return: the value of the effective radius
191       
192        """       
193        return CCoreShellEllipsoidModel.calculate_ER(self)
194       
195    def calculate_VR(self):
196        """
197        Calculate the volf ratio for P(q)*S(q)
198       
199        :return: the value of the volf ratio
200       
201        """       
202        return CCoreShellEllipsoidModel.calculate_VR(self)
203             
204    def set_dispersion(self, parameter, dispersion):
205        """
206        Set the dispersion object for a model parameter
207       
208        :param parameter: name of the parameter [string]
209        :param dispersion: dispersion object of type DispersionModel
210       
211        """
212        return CCoreShellEllipsoidModel.set_dispersion(self,
213               parameter, dispersion.cdisp)
214       
215   
216# End of file
217
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