1 | """ |
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2 | Installation script for SANS models |
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3 | |
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4 | - To compile and install: |
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5 | python setup.py install |
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6 | - To create distribution: |
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7 | python setup.py bdist_wininst |
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8 | - To create odb files: |
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9 | python setup.py odb |
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10 | |
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11 | """ |
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12 | import sys |
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13 | import os |
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14 | |
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15 | from numpy.distutils.misc_util import get_numpy_include_dirs |
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16 | numpy_incl_path = os.path.join(get_numpy_include_dirs()[0], "numpy") |
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17 | |
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18 | def createODBcontent(class_name): |
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19 | """ |
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20 | Return the content of the Pyre odb file for a given class |
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21 | @param class_name: Name of the class to write an odb file for [string] |
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22 | @return: content of the file [string] |
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23 | """ |
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24 | content = "\"\"\"\n" |
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25 | content += " Facility for SANS model\n\n" |
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26 | content += " WARNING: THIS FILE WAS AUTOGENERATED AT INSTALL TIME\n" |
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27 | content += " DO NOT MODIFY\n\n" |
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28 | content += " This code was written as part of the DANSE project\n" |
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29 | content += " http://danse.us/trac/sans/\n" |
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30 | content += " @copyright 2007:" |
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31 | content += " SANS/DANSE Group (University of Tennessee), for the DANSE project\n\n" |
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32 | content += "\"\"\"\n" |
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33 | content += "def model():\n" |
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34 | content += " from ScatteringIntensityFactory import ScatteringIntensityFactory\n" |
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35 | content += " from sans.models.%s import %s\n" % (class_name, class_name) |
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36 | content += " return ScatteringIntensityFactory(%s)('%s')\n"\ |
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37 | % (class_name, class_name) |
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38 | |
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39 | return content |
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40 | |
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41 | def createODBfiles(): |
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42 | """ |
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43 | Create odb files for all available models |
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44 | """ |
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45 | from sans.models.ModelFactory import ModelFactory |
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46 | |
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47 | class_list = ModelFactory().getAllModels() |
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48 | for name in class_list: |
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49 | odb = open("sans/models/pyre/%s.odb" % name, 'w') |
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50 | odb.write(createODBcontent(name)) |
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51 | odb.close() |
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52 | print "sans/models/pyre/%s.odb created" % name |
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53 | |
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54 | # |
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55 | # Proceed with installation |
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56 | # |
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57 | |
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58 | # First, create the odb files |
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59 | if len(sys.argv) > 1 and sys.argv[1].lower() == 'odb': |
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60 | print "Creating odb files" |
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61 | try: |
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62 | createODBfiles() |
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63 | except: |
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64 | print "ERROR: could not create odb files" |
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65 | print sys.exc_value |
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66 | sys.exit() |
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67 | |
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68 | # Then build and install the modules |
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69 | from distutils.core import setup, Extension |
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70 | |
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71 | |
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72 | # Build the module name |
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73 | srcdir = "sans/models/c_extensions" |
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74 | igordir = "libigor" |
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75 | |
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76 | print "Installing SANS models" |
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77 | |
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78 | |
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79 | setup( |
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80 | name="models", |
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81 | version = "0.4", |
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82 | description = "Python module for SANS scattering models", |
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83 | author = "Mathieu Doucet", |
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84 | author_email = "doucet@nist.gov", |
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85 | url = "http://danse.us/trac/sans", |
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86 | |
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87 | # Place this module under the sans package |
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88 | #ext_package = "sans", |
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89 | |
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90 | # Use the pure python modules |
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91 | package_dir = {"sans_extension":"sans/models/c_extensions"}, |
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92 | |
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93 | packages = ["sans","sans.models","sans.models.test", |
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94 | "sans_extension","sans.models.pyre"], |
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95 | |
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96 | ext_modules = [ Extension("sans_extension.c_models", |
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97 | sources = [ |
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98 | "sans/models/c_models/c_models.cpp", |
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99 | #srcdir+"/CSphereModel.c", |
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100 | #srcdir+"/sphere.c", |
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101 | "sans/models/c_models/CSphereModel.cpp", |
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102 | "sans/models/c_models/COnionModel.cpp", |
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103 | "sans/models/c_models/onion.cpp", |
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104 | srcdir+"/onion.c", |
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105 | "sans/models/c_models/CReflModel.cpp", |
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106 | "sans/models/c_models/refl.cpp", |
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107 | srcdir+"/refl.c", |
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108 | "sans/models/c_models/CReflAdvModel.cpp", |
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109 | "sans/models/c_models/refl_adv.cpp", |
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110 | srcdir+"/refl_adv.c", |
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111 | #srcdir+"/SquareWell.c", |
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112 | "sans/models/c_models/CSquareWellStructure.cpp", |
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113 | "sans/models/c_models/SquareWell.cpp", |
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114 | #srcdir+"/StickyHS.c", |
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115 | "sans/models/c_models/CStickyHSStructure.cpp", |
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116 | "sans/models/c_models/StickyHS.cpp", |
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117 | "sans/models/c_models/CHardsphereStructure.cpp", |
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118 | "sans/models/c_models/Hardsphere.cpp", |
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119 | #srcdir+"/DiamCyl.c", |
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120 | "sans/models/c_models/CDiamCylFunc.cpp", |
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121 | "sans/models/c_models/DiamCyl.cpp", |
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122 | #srcdir+"/DiamEllip.c", |
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123 | "sans/models/c_models/CDiamEllipFunc.cpp", |
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124 | "sans/models/c_models/DiamEllip.cpp", |
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125 | #srcdir+"/HayterMSA.c", |
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126 | "sans/models/c_models/CHayterMSAStructure.cpp", |
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127 | "sans/models/c_models/HayterMSA.cpp", |
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128 | "sans/models/c_models/sphere.cpp", |
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129 | srcdir+"/fuzzysphere.c", |
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130 | "sans/models/c_models/CFuzzySphereModel.cpp", |
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131 | "sans/models/c_models/fuzzysphere.cpp", |
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132 | #srcdir+"/CCylinderModel.c", |
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133 | "sans/models/c_models/CCylinderModel.cpp", |
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134 | "sans/models/c_models/cylinder.cpp", |
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135 | "sans/models/c_models/parameters.cpp", |
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136 | "sans/models/c_models/dispersion_visitor.cpp", |
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137 | srcdir+"/cylinder.c", |
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138 | #srcdir+"/CParallelepiped.c", |
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139 | "sans/models/c_models/CParallelepipedModel.cpp", |
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140 | "sans/models/c_models/parallelepiped.cpp", |
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141 | srcdir+"/parallelepiped.c", |
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142 | "sans/models/c_models/CCSParallelepipedModel.cpp", |
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143 | "sans/models/c_models/csparallelepiped.cpp", |
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144 | srcdir+"/csparallelepiped.c", |
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145 | #srcdir+"/CCoreShellCylinderModel.c", |
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146 | "sans/models/c_models/CCoreShellCylinderModel.cpp", |
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147 | "sans/models/c_models/coreshellcylinder.cpp", |
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148 | srcdir+"/core_shell_cylinder.c", |
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149 | #srcdir+"/CHollowCylinderModel.c", |
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150 | "sans/models/c_models/CHollowCylinderModel.cpp", |
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151 | "sans/models/c_models/hollowcylinder.cpp", |
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152 | srcdir+"/hollow_cylinder.c", |
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153 | #srcdir+"/CCoreShellModel.c", |
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154 | #srcdir+"/core_shell.c", |
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155 | "sans/models/c_models/CCoreShellModel.cpp", |
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156 | "sans/models/c_models/coreshellsphere.cpp", |
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157 | #srcdir+"/CEllipsoidModel.c", |
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158 | "sans/models/c_models/CEllipsoidModel.cpp", |
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159 | "sans/models/c_models/ellipsoid.cpp", |
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160 | srcdir+"/ellipsoid.c", |
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161 | "sans/models/c_models/CCoreFourShellModel.cpp", |
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162 | "sans/models/c_models/corefourshell.cpp", |
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163 | #srcdir+"/corefourshell.c", |
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164 | #srcdir+"/CEllipticalCylinderModel.c", |
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165 | "sans/models/c_models/CEllipticalCylinderModel.cpp", |
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166 | "sans/models/c_models/ellipticalcylinder.cpp", |
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167 | srcdir+"/elliptical_cylinder.c", |
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168 | #srcdir+"/CTriaxialEllipsoidModel.c", |
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169 | "sans/models/c_models/CTriaxialEllipsoidModel.cpp", |
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170 | "sans/models/c_models/triaxialellipsoid.cpp", |
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171 | srcdir+"/triaxial_ellipsoid.c", |
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172 | #srcdir+"/CFlexibleCylinderModel.c", |
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173 | "sans/models/c_models/CFlexibleCylinderModel.cpp", |
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174 | "sans/models/c_models/flexiblecylinder.cpp", |
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175 | srcdir+"/flexible_cylinder.c", |
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176 | "sans/models/c_models/CFlexCylEllipXModel.cpp", |
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177 | "sans/models/c_models/flexcyl_ellipX.cpp", |
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178 | srcdir+"/flexcyl_ellipX.c", |
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179 | "sans/models/c_models/CBarBellModel.cpp", |
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180 | "sans/models/c_models/barbell.cpp", |
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181 | srcdir+"/barbell.c", |
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182 | "sans/models/c_models/CCappedCylinderModel.cpp", |
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183 | "sans/models/c_models/capcyl.cpp", |
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184 | srcdir+"/capcyl.c", |
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185 | #srcdir+"/CStakedDisksModel.c", |
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186 | "sans/models/c_models/CSCCrystalModel.cpp", |
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187 | "sans/models/c_models/sc.cpp", |
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188 | srcdir+"/sc.c", |
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189 | "sans/models/c_models/CFCCrystalModel.cpp", |
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190 | "sans/models/c_models/fcc.cpp", |
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191 | srcdir+"/fcc.c", |
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192 | "sans/models/c_models/CBCCrystalModel.cpp", |
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193 | "sans/models/c_models/bcc.cpp", |
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194 | srcdir+"/bcc.c", |
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195 | "sans/models/c_models/CStackedDisksModel.cpp", |
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196 | "sans/models/c_models/stackeddisks.cpp", |
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197 | srcdir+"/stacked_disks.c", |
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198 | #srcdir+"/CLamellarModel.c", |
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199 | "sans/models/c_models/CLamellarModel.cpp", |
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200 | "sans/models/c_models/lamellar.cpp", |
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201 | srcdir+"/lamellar.c", |
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202 | #srcdir+"/CLamellarFFHGModel.c", |
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203 | "sans/models/c_models/CLamellarFFHGModel.cpp", |
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204 | "sans/models/c_models/lamellarFF_HG.cpp", |
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205 | #srcdir+"/lamellarFF_HG.c", |
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206 | #srcdir+"/CLamellarPSModel.c", |
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207 | "sans/models/c_models/CLamellarPSModel.cpp", |
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208 | "sans/models/c_models/lamellarPS.cpp", |
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209 | srcdir+"/lamellarPS.c", |
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210 | #srcdir+"/CLamellarPSHGModel.c", |
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211 | "sans/models/c_models/CLamellarPSHGModel.cpp", |
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212 | "sans/models/c_models/lamellarPS_HG.cpp", |
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213 | #srcdir+"/lamellarPS_HG.c", |
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214 | "sans/models/c_models/CLamellarPCrystalModel.cpp", |
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215 | "sans/models/c_models/lamellarPC.cpp", |
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216 | #srcdir+"/lamellarPC.c", |
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217 | #srcdir+"/COblateModel.c", |
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218 | "sans/models/c_models/CCoreShellEllipsoidModel.cpp", |
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219 | "sans/models/c_models/spheroid.cpp", |
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220 | srcdir+"/spheroid.c", |
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221 | #srcdir+"/COblateModel.c", |
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222 | #"sans/models/c_models/COblateModel.cpp", |
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223 | #"sans/models/c_models/oblate.cpp", |
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224 | #srcdir+"/oblate.c", |
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225 | #srcdir+"/CProlateModel.c", |
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226 | #"sans/models/c_models/CProlateModel.cpp", |
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227 | #"sans/models/c_models/prolate.cpp", |
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228 | #srcdir+"/prolate.c", |
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229 | #srcdir+"/CMultishellModel.c", |
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230 | "sans/models/c_models/CMultiShellModel.cpp", |
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231 | "sans/models/c_models/multishell.cpp", |
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232 | #srcdir+"/multishell.c", |
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233 | "sans/models/c_models/CSphereSLDModel.cpp", |
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234 | "sans/models/c_models/spheresld.cpp", |
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235 | srcdir+"/spheresld.c", |
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236 | #srcdir+"/CVesicleModel.c", |
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237 | "sans/models/c_models/CVesicleModel.cpp", |
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238 | "sans/models/c_models/vesicle.cpp", |
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239 | #srcdir+"/vesicle.c", |
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240 | #srcdir+"/CBinaryHSModel.c", |
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241 | "sans/models/c_models/CBinaryHSModel.cpp", |
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242 | "sans/models/c_models/binaryHS.cpp", |
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243 | "sans/models/c_models/CPoly_GaussCoil.cpp", |
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244 | "sans/models/c_models/polygausscoil.cpp", |
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245 | srcdir+"/rpa.c", |
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246 | "sans/models/c_models/CRPAModel.cpp", |
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247 | "sans/models/c_models/rpa.cpp", |
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248 | #srcdir+"/fractal.c", |
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249 | "sans/models/c_models/CFractalModel.cpp", |
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250 | "sans/models/c_models/fractal.cpp", |
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251 | srcdir+"/sld_cal.c", |
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252 | "sans/models/c_models/CSLDCalFunc.cpp", |
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253 | "sans/models/c_models/sld_cal.cpp", |
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254 | #gammainc function need to imported from somewhere |
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255 | #srcdir+"/polyexclvol.c", |
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256 | #"sans/models/c_models/CPolymerExclVolModel.cpp", |
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257 | #"sans/models/c_models/polyexclvol.cpp", |
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258 | srcdir+"/libmultifunc/librefl.c", |
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259 | #srcdir+"/polygausscoil.c", |
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260 | #srcdir+"/binaryHS.c", |
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261 | #srcdir+"/disperser.c", |
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262 | igordir+"/libCylinder.c", |
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263 | igordir+"/libStructureFactor.c", |
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264 | igordir+"/libSphere.c", |
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265 | igordir+"/libTwoPhase.c", |
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266 | #srcdir+"/gaussian.c", |
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267 | #"sans/models/c_models/CGaussian.cpp", |
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268 | #srcdir+"/logNormal.c", |
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269 | #"sans/models/c_models/CLogNormal.cpp", |
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270 | #srcdir+"/schulz.c", |
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271 | #"sans/models/c_models/CSchulz.cpp", |
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272 | #srcdir+"/lorentzian.c", |
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273 | #"sans/models/c_models/CLorentzian.cpp" |
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274 | ], |
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275 | include_dirs=[igordir,srcdir,"sans/models/c_models",numpy_incl_path])]) |
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276 | |
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