/**
	This software was developed by the University of Tennessee as part of the
	Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
	project funded by the US National Science Foundation.

	If you use DANSE applications to do scientific research that leads to
	publication, we ask that you acknowledge the use of the software with the
	following sentence:

	"This work benefited from DANSE software developed under NSF award DMR-0520547."

	copyright 2008, University of Tennessee
 */

/** CReflAdvModel
 *
 * C extension 
 *
 * WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
 *          DO NOT MODIFY THIS FILE, MODIFY refl_adv.h
 *          AND RE-RUN THE GENERATOR SCRIPT
 *
 */
#define NO_IMPORT_ARRAY
#define PY_ARRAY_UNIQUE_SYMBOL PyArray_API_sans
 
extern "C" {
#include <Python.h>
#include <arrayobject.h>
#include "structmember.h"
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include <time.h>
#include "refl_adv.h"
}

#include "models.hh"
#include "dispersion_visitor.hh"

/// Error object for raised exceptions
static PyObject * CReflAdvModelError = NULL;


// Class definition
typedef struct {
    PyObject_HEAD
    /// Parameters
    PyObject * params;
    /// Dispersion parameters
    PyObject * dispersion;
    /// Underlying model object
    ReflAdvModel * model;
    /// Log for unit testing
    PyObject * log;
} CReflAdvModel;


static void
CReflAdvModel_dealloc(CReflAdvModel* self)
{
    Py_DECREF(self->params);
    Py_DECREF(self->dispersion);
    Py_DECREF(self->log);
    delete self->model;
    self->ob_type->tp_free((PyObject*)self);
    

}

static PyObject *
CReflAdvModel_new(PyTypeObject *type, PyObject *args, PyObject *kwds)
{
    CReflAdvModel *self;
    
    self = (CReflAdvModel *)type->tp_alloc(type, 0);
   
    return (PyObject *)self;
}

static int
CReflAdvModel_init(CReflAdvModel *self, PyObject *args, PyObject *kwds)
{
    if (self != NULL) {
    	
    	// Create parameters
        self->params = PyDict_New();
        self->dispersion = PyDict_New();
        self->model = new ReflAdvModel();
        
        // Initialize parameter dictionary
        PyDict_SetItemString(self->params,"sldIM_flat4",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"thick_flat8",Py_BuildValue("d",100.000000000000));
        PyDict_SetItemString(self->params,"thick_flat9",Py_BuildValue("d",100.000000000000));
        PyDict_SetItemString(self->params,"sldIM_flat7",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"sldIM_flat10",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"sldIM_flat5",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"thick_flat1",Py_BuildValue("d",100.000000000000));
        PyDict_SetItemString(self->params,"thick_flat3",Py_BuildValue("d",100.000000000000));
        PyDict_SetItemString(self->params,"n_layers",Py_BuildValue("d",1.000000000000));
        PyDict_SetItemString(self->params,"thick_flat6",Py_BuildValue("d",100.000000000000));
        PyDict_SetItemString(self->params,"thick_flat7",Py_BuildValue("d",100.000000000000));
        PyDict_SetItemString(self->params,"thick_flat4",Py_BuildValue("d",100.000000000000));
        PyDict_SetItemString(self->params,"thick_flat5",Py_BuildValue("d",100.000000000000));
        PyDict_SetItemString(self->params,"thick_inter0",Py_BuildValue("d",50.000000000000));
        PyDict_SetItemString(self->params,"thick_inter1",Py_BuildValue("d",50.000000000000));
        PyDict_SetItemString(self->params,"sld_bottom0",Py_BuildValue("d",0.000002070000));
        PyDict_SetItemString(self->params,"thick_inter3",Py_BuildValue("d",50.000000000000));
        PyDict_SetItemString(self->params,"thick_inter4",Py_BuildValue("d",50.000000000000));
        PyDict_SetItemString(self->params,"thick_inter5",Py_BuildValue("d",50.000000000000));
        PyDict_SetItemString(self->params,"thick_inter6",Py_BuildValue("d",50.000000000000));
        PyDict_SetItemString(self->params,"thick_inter7",Py_BuildValue("d",50.000000000000));
        PyDict_SetItemString(self->params,"thick_inter8",Py_BuildValue("d",50.000000000000));
        PyDict_SetItemString(self->params,"thick_inter9",Py_BuildValue("d",50.000000000000));
        PyDict_SetItemString(self->params,"npts_inter",Py_BuildValue("d",21.000000000000));
        PyDict_SetItemString(self->params,"sldIM_flat1",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"scale",Py_BuildValue("d",1.000000000000));
        PyDict_SetItemString(self->params,"sldIM_flat2",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"func_inter9",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"thick_inter10",Py_BuildValue("d",50.000000000000));
        PyDict_SetItemString(self->params,"sldIM_flat3",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"func_inter8",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"thick_flat2",Py_BuildValue("d",100.000000000000));
        PyDict_SetItemString(self->params,"func_inter0",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"sld_medium",Py_BuildValue("d",0.000001000000));
        PyDict_SetItemString(self->params,"func_inter2",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"func_inter3",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"thick_flat10",Py_BuildValue("d",100.000000000000));
        PyDict_SetItemString(self->params,"func_inter5",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"func_inter6",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"func_inter7",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"sld_flat4",Py_BuildValue("d",0.000003500000));
        PyDict_SetItemString(self->params,"sld_flat5",Py_BuildValue("d",0.000004000000));
        PyDict_SetItemString(self->params,"sld_flat6",Py_BuildValue("d",0.000003500000));
        PyDict_SetItemString(self->params,"sld_flat7",Py_BuildValue("d",0.000004000000));
        PyDict_SetItemString(self->params,"sld_flat1",Py_BuildValue("d",0.000004000000));
        PyDict_SetItemString(self->params,"sld_flat2",Py_BuildValue("d",0.000003500000));
        PyDict_SetItemString(self->params,"sld_flat3",Py_BuildValue("d",0.000004000000));
        PyDict_SetItemString(self->params,"sldIM_flat8",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"sld_flat8",Py_BuildValue("d",0.000003500000));
        PyDict_SetItemString(self->params,"sld_flat9",Py_BuildValue("d",0.000004000000));
        PyDict_SetItemString(self->params,"sldIM_flat9",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"nu_inter10",Py_BuildValue("d",2.500000000000));
        PyDict_SetItemString(self->params,"background",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"func_inter1",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"sldIM_sub0",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"sldIM_medium",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"sld_flat10",Py_BuildValue("d",0.000003500000));
        PyDict_SetItemString(self->params,"sldIM_flat6",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"func_inter4",Py_BuildValue("d",0.000000000000));
        PyDict_SetItemString(self->params,"thick_inter2",Py_BuildValue("d",50.000000000000));
        PyDict_SetItemString(self->params,"nu_inter8",Py_BuildValue("d",2.500000000000));
        PyDict_SetItemString(self->params,"nu_inter5",Py_BuildValue("d",2.500000000000));
        PyDict_SetItemString(self->params,"nu_inter4",Py_BuildValue("d",2.500000000000));
        PyDict_SetItemString(self->params,"nu_inter7",Py_BuildValue("d",2.500000000000));
        PyDict_SetItemString(self->params,"nu_inter6",Py_BuildValue("d",2.500000000000));
        PyDict_SetItemString(self->params,"nu_inter1",Py_BuildValue("d",2.500000000000));
        PyDict_SetItemString(self->params,"nu_inter0",Py_BuildValue("d",2.500000000000));
        PyDict_SetItemString(self->params,"nu_inter3",Py_BuildValue("d",2.500000000000));
        PyDict_SetItemString(self->params,"nu_inter2",Py_BuildValue("d",2.500000000000));
        PyDict_SetItemString(self->params,"nu_inter9",Py_BuildValue("d",2.500000000000));
        PyDict_SetItemString(self->params,"func_inter10",Py_BuildValue("d",0.000000000000));
        // Initialize dispersion / averaging parameter dict
        DispersionVisitor* visitor = new DispersionVisitor();
        PyObject * disp_dict;
        disp_dict = PyDict_New();
        self->model->thick_inter0.dispersion->accept_as_source(visitor, self->model->thick_inter0.dispersion, disp_dict);
        PyDict_SetItemString(self->dispersion, "thick_inter0", disp_dict);


         
        // Create empty log
        self->log = PyDict_New();
        
        

    }
    return 0;
}

static char name_params[] = "params";
static char def_params[] = "Parameters";
static char name_dispersion[] = "dispersion";
static char def_dispersion[] = "Dispersion parameters";
static char name_log[] = "log";
static char def_log[] = "Log";

static PyMemberDef CReflAdvModel_members[] = {
    {name_params, T_OBJECT, offsetof(CReflAdvModel, params), 0, def_params},
	{name_dispersion, T_OBJECT, offsetof(CReflAdvModel, dispersion), 0, def_dispersion},     
    {name_log, T_OBJECT, offsetof(CReflAdvModel, log), 0, def_log},
    {NULL}  /* Sentinel */
};

/** Read double from PyObject
    @param p PyObject
    @return double
*/
double CReflAdvModel_readDouble(PyObject *p) {
    if (PyFloat_Check(p)==1) {
        return (double)(((PyFloatObject *)(p))->ob_fval);
    } else if (PyInt_Check(p)==1) {
        return (double)(((PyIntObject *)(p))->ob_ival);
    } else if (PyLong_Check(p)==1) {
        return (double)PyLong_AsLong(p);
    } else {
        return 0.0;
    }
}
/**
 * Function to call to evaluate model
 * @param args: input numpy array q[] 
 * @return: numpy array object 
 */
 
static PyObject *evaluateOneDim(ReflAdvModel* model, PyArrayObject *q){
    PyArrayObject *result;
   
    // Check validity of array q , q must be of dimension 1, an array of double
    if (q->nd != 1 || q->descr->type_num != PyArray_DOUBLE)
    {
        //const char * message= "Invalid array: q->nd=%d,type_num=%d\n",q->nd,q->descr->type_num;
        //PyErr_SetString(PyExc_ValueError , message);
        return NULL;
    }
    result = (PyArrayObject *)PyArray_FromDims(q->nd, (int *)(q->dimensions), 
										  PyArray_DOUBLE);
	if (result == NULL) {
        const char * message= "Could not create result ";
        PyErr_SetString(PyExc_RuntimeError , message);
		return NULL;
	}
	 for (int i = 0; i < q->dimensions[0]; i++){
      double q_value  = *(double *)(q->data + i*q->strides[0]);
      double *result_value = (double *)(result->data + i*result->strides[0]);
      *result_value =(*model)(q_value);
	}
    return PyArray_Return(result); 
 }

 /**
 * Function to call to evaluate model
 * @param args: input numpy array  [x[],y[]]
 * @return: numpy array object 
 */
 static PyObject * evaluateTwoDimXY( ReflAdvModel* model, 
                              PyArrayObject *x, PyArrayObject *y)
 {
    PyArrayObject *result;
    int i, x_len, y_len, dims[1];
    //check validity of input vectors
    if (x->nd != 1 || x->descr->type_num != PyArray_DOUBLE
        || y->nd != 1 || y->descr->type_num != PyArray_DOUBLE
        || y->dimensions[0] != x->dimensions[0]){
        const char * message= "evaluateTwoDimXY  expect 2 numpy arrays";
        PyErr_SetString(PyExc_ValueError , message); 
        return NULL;
    }
   
	if (PyArray_Check(x) && PyArray_Check(y)) {
		
	    x_len = dims[0]= x->dimensions[0];
        y_len = dims[0]= y->dimensions[0];
	    
	    // Make a new double matrix of same dims
        result=(PyArrayObject *) PyArray_FromDims(1,dims,NPY_DOUBLE);
        if (result == NULL){
	    const char * message= "Could not create result ";
        PyErr_SetString(PyExc_RuntimeError , message);
	    return NULL;
	    }
       
        /* Do the calculation. */
        for ( i=0; i< x_len; i++) {
            double x_value = *(double *)(x->data + i*x->strides[0]);
  		    double y_value = *(double *)(y->data + i*y->strides[0]);
  			double *result_value = (double *)(result->data +
  			      i*result->strides[0]);
  			*result_value = (*model)(x_value, y_value);
        }           
        return PyArray_Return(result); 
        
        }else{
		    PyErr_SetString(CReflAdvModelError, 
                   "CReflAdvModel.evaluateTwoDimXY couldn't run.");
	        return NULL;
		}      	
}
/**
 *  evalDistribution function evaluate a model function with input vector
 *  @param args: input q as vector or [qx, qy] where qx, qy are vectors
 *
 */ 
static PyObject * evalDistribution(CReflAdvModel *self, PyObject *args){
	PyObject *qx, *qy;
	PyArrayObject * pars;
	int npars ,mpars;
	
	// Get parameters
	
	    // Reader parameter dictionary
    self->model->sldIM_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat4") );
    self->model->thick_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat8") );
    self->model->thick_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat9") );
    self->model->sldIM_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat7") );
    self->model->sldIM_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat10") );
    self->model->sldIM_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat5") );
    self->model->thick_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat1") );
    self->model->thick_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat3") );
    self->model->n_layers = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_layers") );
    self->model->thick_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat6") );
    self->model->thick_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat7") );
    self->model->thick_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat4") );
    self->model->thick_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat5") );
    self->model->thick_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter0") );
    self->model->thick_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter1") );
    self->model->sld_bottom0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_bottom0") );
    self->model->thick_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter3") );
    self->model->thick_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter4") );
    self->model->thick_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter5") );
    self->model->thick_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter6") );
    self->model->thick_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter7") );
    self->model->thick_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter8") );
    self->model->thick_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter9") );
    self->model->npts_inter = PyFloat_AsDouble( PyDict_GetItemString(self->params, "npts_inter") );
    self->model->sldIM_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat1") );
    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
    self->model->sldIM_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat2") );
    self->model->func_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter9") );
    self->model->thick_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter10") );
    self->model->sldIM_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat3") );
    self->model->func_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter8") );
    self->model->thick_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat2") );
    self->model->func_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter0") );
    self->model->sld_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_medium") );
    self->model->func_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter2") );
    self->model->func_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter3") );
    self->model->thick_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat10") );
    self->model->func_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter5") );
    self->model->func_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter6") );
    self->model->func_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter7") );
    self->model->sld_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat4") );
    self->model->sld_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat5") );
    self->model->sld_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat6") );
    self->model->sld_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat7") );
    self->model->sld_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat1") );
    self->model->sld_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat2") );
    self->model->sld_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat3") );
    self->model->sldIM_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat8") );
    self->model->sld_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat8") );
    self->model->sld_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat9") );
    self->model->sldIM_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat9") );
    self->model->nu_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter10") );
    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
    self->model->func_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter1") );
    self->model->sldIM_sub0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_sub0") );
    self->model->sldIM_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_medium") );
    self->model->sld_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat10") );
    self->model->sldIM_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat6") );
    self->model->func_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter4") );
    self->model->thick_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter2") );
    self->model->nu_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter8") );
    self->model->nu_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter5") );
    self->model->nu_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter4") );
    self->model->nu_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter7") );
    self->model->nu_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter6") );
    self->model->nu_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter1") );
    self->model->nu_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter0") );
    self->model->nu_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter3") );
    self->model->nu_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter2") );
    self->model->nu_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter9") );
    self->model->func_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter10") );
    // Read in dispersion parameters
    PyObject* disp_dict;
    DispersionVisitor* visitor = new DispersionVisitor();
    disp_dict = PyDict_GetItemString(self->dispersion, "thick_inter0");
    self->model->thick_inter0.dispersion->accept_as_destination(visitor, self->model->thick_inter0.dispersion, disp_dict);

	
	// Get input and determine whether we have to supply a 1D or 2D return value.
	if ( !PyArg_ParseTuple(args,"O",&pars) ) {
	    PyErr_SetString(CReflAdvModelError, 
	    	"CReflAdvModel.evalDistribution expects a q value.");
		return NULL;
	}
    // Check params
	
    if(PyArray_Check(pars)==1) {
		
	    // Length of list should 1 or 2
	    npars = pars->nd; 
	    if(npars==1) {
	        // input is a numpy array
	        if (PyArray_Check(pars)) {
		        return evaluateOneDim(self->model, (PyArrayObject*)pars); 
		    }
		}else{
		    PyErr_SetString(CReflAdvModelError, 
                   "CReflAdvModel.evalDistribution expect numpy array of one dimension.");
	        return NULL;
		}
    }else if( PyList_Check(pars)==1) {
    	// Length of list should be 2 for I(qx,qy)
	    mpars = PyList_GET_SIZE(pars); 
	    if(mpars!=2) {
	    	PyErr_SetString(CReflAdvModelError, 
	    		"CReflAdvModel.evalDistribution expects a list of dimension 2.");
	    	return NULL;
	    }
	     qx = PyList_GET_ITEM(pars,0);
	     qy = PyList_GET_ITEM(pars,1);
	     if (PyArray_Check(qx) && PyArray_Check(qy)) {
	         return evaluateTwoDimXY(self->model, (PyArrayObject*)qx,
		           (PyArrayObject*)qy);
		 }else{
		    PyErr_SetString(CReflAdvModelError, 
                   "CReflAdvModel.evalDistribution expect 2 numpy arrays in list.");
	        return NULL;
	     }
	}
	PyErr_SetString(CReflAdvModelError, 
                   "CReflAdvModel.evalDistribution couln't be run.");
	return NULL;
	
}

/**
 * Function to call to evaluate model
 * @param args: input q or [q,phi]
 * @return: function value
 */
static PyObject * run(CReflAdvModel *self, PyObject *args) {
	double q_value, phi_value;
	PyObject* pars;
	int npars;
	
	// Get parameters
	
	    // Reader parameter dictionary
    self->model->sldIM_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat4") );
    self->model->thick_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat8") );
    self->model->thick_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat9") );
    self->model->sldIM_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat7") );
    self->model->sldIM_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat10") );
    self->model->sldIM_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat5") );
    self->model->thick_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat1") );
    self->model->thick_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat3") );
    self->model->n_layers = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_layers") );
    self->model->thick_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat6") );
    self->model->thick_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat7") );
    self->model->thick_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat4") );
    self->model->thick_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat5") );
    self->model->thick_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter0") );
    self->model->thick_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter1") );
    self->model->sld_bottom0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_bottom0") );
    self->model->thick_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter3") );
    self->model->thick_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter4") );
    self->model->thick_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter5") );
    self->model->thick_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter6") );
    self->model->thick_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter7") );
    self->model->thick_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter8") );
    self->model->thick_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter9") );
    self->model->npts_inter = PyFloat_AsDouble( PyDict_GetItemString(self->params, "npts_inter") );
    self->model->sldIM_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat1") );
    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
    self->model->sldIM_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat2") );
    self->model->func_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter9") );
    self->model->thick_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter10") );
    self->model->sldIM_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat3") );
    self->model->func_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter8") );
    self->model->thick_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat2") );
    self->model->func_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter0") );
    self->model->sld_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_medium") );
    self->model->func_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter2") );
    self->model->func_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter3") );
    self->model->thick_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat10") );
    self->model->func_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter5") );
    self->model->func_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter6") );
    self->model->func_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter7") );
    self->model->sld_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat4") );
    self->model->sld_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat5") );
    self->model->sld_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat6") );
    self->model->sld_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat7") );
    self->model->sld_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat1") );
    self->model->sld_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat2") );
    self->model->sld_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat3") );
    self->model->sldIM_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat8") );
    self->model->sld_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat8") );
    self->model->sld_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat9") );
    self->model->sldIM_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat9") );
    self->model->nu_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter10") );
    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
    self->model->func_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter1") );
    self->model->sldIM_sub0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_sub0") );
    self->model->sldIM_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_medium") );
    self->model->sld_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat10") );
    self->model->sldIM_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat6") );
    self->model->func_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter4") );
    self->model->thick_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter2") );
    self->model->nu_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter8") );
    self->model->nu_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter5") );
    self->model->nu_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter4") );
    self->model->nu_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter7") );
    self->model->nu_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter6") );
    self->model->nu_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter1") );
    self->model->nu_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter0") );
    self->model->nu_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter3") );
    self->model->nu_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter2") );
    self->model->nu_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter9") );
    self->model->func_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter10") );
    // Read in dispersion parameters
    PyObject* disp_dict;
    DispersionVisitor* visitor = new DispersionVisitor();
    disp_dict = PyDict_GetItemString(self->dispersion, "thick_inter0");
    self->model->thick_inter0.dispersion->accept_as_destination(visitor, self->model->thick_inter0.dispersion, disp_dict);

	
	// Get input and determine whether we have to supply a 1D or 2D return value.
	if ( !PyArg_ParseTuple(args,"O",&pars) ) {
	    PyErr_SetString(CReflAdvModelError, 
	    	"CReflAdvModel.run expects a q value.");
		return NULL;
	}
	  
	// Check params
	if( PyList_Check(pars)==1) {
		
		// Length of list should be 2 for I(q,phi)
	    npars = PyList_GET_SIZE(pars); 
	    if(npars!=2) {
	    	PyErr_SetString(CReflAdvModelError, 
	    		"CReflAdvModel.run expects a double or a list of dimension 2.");
	    	return NULL;
	    }
	    // We have a vector q, get the q and phi values at which
	    // to evaluate I(q,phi)
	    q_value = CReflAdvModel_readDouble(PyList_GET_ITEM(pars,0));
	    phi_value = CReflAdvModel_readDouble(PyList_GET_ITEM(pars,1));
	    // Skip zero
	    if (q_value==0) {
	    	return Py_BuildValue("d",0.0);
	    }
		return Py_BuildValue("d",(*(self->model)).evaluate_rphi(q_value,phi_value));

	} else {

		// We have a scalar q, we will evaluate I(q)
		q_value = CReflAdvModel_readDouble(pars);		
		
		return Py_BuildValue("d",(*(self->model))(q_value));
	}	
}
/**
 * Function to call to calculate_ER
 * @return: effective radius value 
 */
static PyObject * calculate_ER(CReflAdvModel *self) {

	// Get parameters
	
	    // Reader parameter dictionary
    self->model->sldIM_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat4") );
    self->model->thick_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat8") );
    self->model->thick_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat9") );
    self->model->sldIM_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat7") );
    self->model->sldIM_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat10") );
    self->model->sldIM_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat5") );
    self->model->thick_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat1") );
    self->model->thick_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat3") );
    self->model->n_layers = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_layers") );
    self->model->thick_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat6") );
    self->model->thick_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat7") );
    self->model->thick_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat4") );
    self->model->thick_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat5") );
    self->model->thick_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter0") );
    self->model->thick_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter1") );
    self->model->sld_bottom0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_bottom0") );
    self->model->thick_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter3") );
    self->model->thick_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter4") );
    self->model->thick_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter5") );
    self->model->thick_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter6") );
    self->model->thick_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter7") );
    self->model->thick_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter8") );
    self->model->thick_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter9") );
    self->model->npts_inter = PyFloat_AsDouble( PyDict_GetItemString(self->params, "npts_inter") );
    self->model->sldIM_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat1") );
    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
    self->model->sldIM_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat2") );
    self->model->func_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter9") );
    self->model->thick_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter10") );
    self->model->sldIM_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat3") );
    self->model->func_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter8") );
    self->model->thick_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat2") );
    self->model->func_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter0") );
    self->model->sld_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_medium") );
    self->model->func_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter2") );
    self->model->func_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter3") );
    self->model->thick_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat10") );
    self->model->func_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter5") );
    self->model->func_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter6") );
    self->model->func_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter7") );
    self->model->sld_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat4") );
    self->model->sld_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat5") );
    self->model->sld_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat6") );
    self->model->sld_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat7") );
    self->model->sld_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat1") );
    self->model->sld_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat2") );
    self->model->sld_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat3") );
    self->model->sldIM_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat8") );
    self->model->sld_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat8") );
    self->model->sld_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat9") );
    self->model->sldIM_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat9") );
    self->model->nu_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter10") );
    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
    self->model->func_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter1") );
    self->model->sldIM_sub0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_sub0") );
    self->model->sldIM_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_medium") );
    self->model->sld_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat10") );
    self->model->sldIM_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat6") );
    self->model->func_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter4") );
    self->model->thick_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter2") );
    self->model->nu_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter8") );
    self->model->nu_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter5") );
    self->model->nu_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter4") );
    self->model->nu_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter7") );
    self->model->nu_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter6") );
    self->model->nu_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter1") );
    self->model->nu_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter0") );
    self->model->nu_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter3") );
    self->model->nu_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter2") );
    self->model->nu_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter9") );
    self->model->func_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter10") );
    // Read in dispersion parameters
    PyObject* disp_dict;
    DispersionVisitor* visitor = new DispersionVisitor();
    disp_dict = PyDict_GetItemString(self->dispersion, "thick_inter0");
    self->model->thick_inter0.dispersion->accept_as_destination(visitor, self->model->thick_inter0.dispersion, disp_dict);

		
	return Py_BuildValue("d",(*(self->model)).calculate_ER());

}
/**
 * Function to call to evaluate model in cartesian coordinates
 * @param args: input q or [qx, qy]]
 * @return: function value
 */
static PyObject * runXY(CReflAdvModel *self, PyObject *args) {
	double qx_value, qy_value;
	PyObject* pars;
	int npars;
	
	// Get parameters
	
	    // Reader parameter dictionary
    self->model->sldIM_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat4") );
    self->model->thick_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat8") );
    self->model->thick_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat9") );
    self->model->sldIM_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat7") );
    self->model->sldIM_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat10") );
    self->model->sldIM_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat5") );
    self->model->thick_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat1") );
    self->model->thick_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat3") );
    self->model->n_layers = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_layers") );
    self->model->thick_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat6") );
    self->model->thick_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat7") );
    self->model->thick_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat4") );
    self->model->thick_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat5") );
    self->model->thick_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter0") );
    self->model->thick_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter1") );
    self->model->sld_bottom0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_bottom0") );
    self->model->thick_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter3") );
    self->model->thick_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter4") );
    self->model->thick_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter5") );
    self->model->thick_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter6") );
    self->model->thick_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter7") );
    self->model->thick_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter8") );
    self->model->thick_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter9") );
    self->model->npts_inter = PyFloat_AsDouble( PyDict_GetItemString(self->params, "npts_inter") );
    self->model->sldIM_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat1") );
    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
    self->model->sldIM_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat2") );
    self->model->func_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter9") );
    self->model->thick_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter10") );
    self->model->sldIM_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat3") );
    self->model->func_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter8") );
    self->model->thick_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat2") );
    self->model->func_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter0") );
    self->model->sld_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_medium") );
    self->model->func_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter2") );
    self->model->func_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter3") );
    self->model->thick_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat10") );
    self->model->func_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter5") );
    self->model->func_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter6") );
    self->model->func_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter7") );
    self->model->sld_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat4") );
    self->model->sld_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat5") );
    self->model->sld_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat6") );
    self->model->sld_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat7") );
    self->model->sld_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat1") );
    self->model->sld_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat2") );
    self->model->sld_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat3") );
    self->model->sldIM_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat8") );
    self->model->sld_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat8") );
    self->model->sld_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat9") );
    self->model->sldIM_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat9") );
    self->model->nu_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter10") );
    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
    self->model->func_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter1") );
    self->model->sldIM_sub0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_sub0") );
    self->model->sldIM_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_medium") );
    self->model->sld_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat10") );
    self->model->sldIM_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat6") );
    self->model->func_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter4") );
    self->model->thick_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter2") );
    self->model->nu_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter8") );
    self->model->nu_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter5") );
    self->model->nu_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter4") );
    self->model->nu_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter7") );
    self->model->nu_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter6") );
    self->model->nu_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter1") );
    self->model->nu_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter0") );
    self->model->nu_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter3") );
    self->model->nu_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter2") );
    self->model->nu_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "nu_inter9") );
    self->model->func_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter10") );
    // Read in dispersion parameters
    PyObject* disp_dict;
    DispersionVisitor* visitor = new DispersionVisitor();
    disp_dict = PyDict_GetItemString(self->dispersion, "thick_inter0");
    self->model->thick_inter0.dispersion->accept_as_destination(visitor, self->model->thick_inter0.dispersion, disp_dict);

	
	// Get input and determine whether we have to supply a 1D or 2D return value.
	if ( !PyArg_ParseTuple(args,"O",&pars) ) {
	    PyErr_SetString(CReflAdvModelError, 
	    	"CReflAdvModel.run expects a q value.");
		return NULL;
	}
	  
	// Check params
	if( PyList_Check(pars)==1) {
		
		// Length of list should be 2 for I(qx, qy))
	    npars = PyList_GET_SIZE(pars); 
	    if(npars!=2) {
	    	PyErr_SetString(CReflAdvModelError, 
	    		"CReflAdvModel.run expects a double or a list of dimension 2.");
	    	return NULL;
	    }
	    // We have a vector q, get the qx and qy values at which
	    // to evaluate I(qx,qy)
	    qx_value = CReflAdvModel_readDouble(PyList_GET_ITEM(pars,0));
	    qy_value = CReflAdvModel_readDouble(PyList_GET_ITEM(pars,1));
	    return Py_BuildValue("d",(*(self->model))(qx_value,qy_value));

	} else {

		// We have a scalar q, we will evaluate I(q)
		qx_value = CReflAdvModel_readDouble(pars);		
		
		return Py_BuildValue("d",(*(self->model))(qx_value));
	}	
}

static PyObject * reset(CReflAdvModel *self, PyObject *args) {
    

    return Py_BuildValue("d",0.0);
}

static PyObject * set_dispersion(CReflAdvModel *self, PyObject *args) {
	PyObject * disp;
	const char * par_name;

	if ( !PyArg_ParseTuple(args,"sO", &par_name, &disp) ) {
	    PyErr_SetString(CReflAdvModelError,
	    	"CReflAdvModel.set_dispersion expects a DispersionModel object.");
		return NULL;
	}
	void *temp = PyCObject_AsVoidPtr(disp);
	DispersionModel * dispersion = static_cast<DispersionModel *>(temp);


	// Ugliness necessary to go from python to C
	    // TODO: refactor this
    if (!strcmp(par_name, "thick_inter0")) {
        self->model->thick_inter0.dispersion = dispersion;
    } else {
	    PyErr_SetString(CReflAdvModelError,
	    	"CReflAdvModel.set_dispersion expects a valid parameter name.");
		return NULL;
	}

	DispersionVisitor* visitor = new DispersionVisitor();
	PyObject * disp_dict = PyDict_New();
	dispersion->accept_as_source(visitor, dispersion, disp_dict);
	PyDict_SetItemString(self->dispersion, par_name, disp_dict);
    return Py_BuildValue("i",1);
}


static PyMethodDef CReflAdvModel_methods[] = {
    {"run",      (PyCFunction)run     , METH_VARARGS,
      "Evaluate the model at a given Q or Q, phi"},
    {"runXY",      (PyCFunction)runXY     , METH_VARARGS,
      "Evaluate the model at a given Q or Qx, Qy"},
    {"calculate_ER",      (PyCFunction)calculate_ER     , METH_VARARGS,
      "Evaluate the model at a given Q or Q, phi"},
      
    {"evalDistribution",  (PyCFunction)evalDistribution , METH_VARARGS,
      "Evaluate the model at a given Q or Qx, Qy vector "},
    {"reset",    (PyCFunction)reset   , METH_VARARGS,
      "Reset pair correlation"},
    {"set_dispersion",      (PyCFunction)set_dispersion     , METH_VARARGS,
      "Set the dispersion model for a given parameter"},
   {NULL}
};

static PyTypeObject CReflAdvModelType = {
    PyObject_HEAD_INIT(NULL)
    0,                         /*ob_size*/
    "CReflAdvModel",             /*tp_name*/
    sizeof(CReflAdvModel),             /*tp_basicsize*/
    0,                         /*tp_itemsize*/
    (destructor)CReflAdvModel_dealloc, /*tp_dealloc*/
    0,                         /*tp_print*/
    0,                         /*tp_getattr*/
    0,                         /*tp_setattr*/
    0,                         /*tp_compare*/
    0,                         /*tp_repr*/
    0,                         /*tp_as_number*/
    0,                         /*tp_as_sequence*/
    0,                         /*tp_as_mapping*/
    0,                         /*tp_hash */
    0,                         /*tp_call*/
    0,                         /*tp_str*/
    0,                         /*tp_getattro*/
    0,                         /*tp_setattro*/
    0,                         /*tp_as_buffer*/
    Py_TPFLAGS_DEFAULT | Py_TPFLAGS_BASETYPE, /*tp_flags*/
    "CReflAdvModel objects",           /* tp_doc */
    0,		               /* tp_traverse */
    0,		               /* tp_clear */
    0,		               /* tp_richcompare */
    0,		               /* tp_weaklistoffset */
    0,		               /* tp_iter */
    0,		               /* tp_iternext */
    CReflAdvModel_methods,             /* tp_methods */
    CReflAdvModel_members,             /* tp_members */
    0,                         /* tp_getset */
    0,                         /* tp_base */
    0,                         /* tp_dict */
    0,                         /* tp_descr_get */
    0,                         /* tp_descr_set */
    0,                         /* tp_dictoffset */
    (initproc)CReflAdvModel_init,      /* tp_init */
    0,                         /* tp_alloc */
    CReflAdvModel_new,                 /* tp_new */
};


//static PyMethodDef module_methods[] = {
//    {NULL} 
//};

/**
 * Function used to add the model class to a module
 * @param module: module to add the class to
 */ 
void addCReflAdvModel(PyObject *module) {
	PyObject *d;
	
    if (PyType_Ready(&CReflAdvModelType) < 0)
        return;

    Py_INCREF(&CReflAdvModelType);
    PyModule_AddObject(module, "CReflAdvModel", (PyObject *)&CReflAdvModelType);
    
    d = PyModule_GetDict(module);
    static char error_name[] = "CReflAdvModel.error";
    CReflAdvModelError = PyErr_NewException(error_name, NULL, NULL);
    PyDict_SetItemString(d, "CReflAdvModelError", CReflAdvModelError);
}