[5068697] | 1 | #!/usr/bin/env python |
---|
| 2 | """ |
---|
| 3 | This software was developed by the University of Tennessee as part of the |
---|
| 4 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
---|
| 5 | project funded by the US National Science Foundation. |
---|
| 6 | |
---|
| 7 | If you use DANSE applications to do scientific research that leads to |
---|
| 8 | publication, we ask that you acknowledge the use of the software with the |
---|
| 9 | following sentence: |
---|
| 10 | |
---|
| 11 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
---|
| 12 | |
---|
| 13 | copyright 2008, University of Tennessee |
---|
| 14 | """ |
---|
| 15 | |
---|
| 16 | """ Provide functionality for a C extension model |
---|
| 17 | |
---|
| 18 | WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
---|
| 19 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\triaxial_ellipsoid.h |
---|
| 20 | AND RE-RUN THE GENERATOR SCRIPT |
---|
| 21 | |
---|
| 22 | """ |
---|
| 23 | |
---|
| 24 | from sans.models.BaseComponent import BaseComponent |
---|
| 25 | from sans_extension.c_models import CTriaxialEllipsoidModel |
---|
| 26 | import copy |
---|
| 27 | |
---|
| 28 | class TriaxialEllipsoidModel(CTriaxialEllipsoidModel, BaseComponent): |
---|
| 29 | """ Class that evaluates a TriaxialEllipsoidModel model. |
---|
| 30 | This file was auto-generated from ..\c_extensions\triaxial_ellipsoid.h. |
---|
| 31 | Refer to that file and the structure it contains |
---|
| 32 | for details of the model. |
---|
| 33 | List of default parameters: |
---|
| 34 | scale = 1.0 |
---|
[3c102d4] | 35 | semi_axisA = 35.0 [A] |
---|
| 36 | semi_axisB = 100.0 [A] |
---|
[5068697] | 37 | semi_axisC = 400.0 [A] |
---|
| 38 | contrast = 5.3e-006 [1/A²] |
---|
| 39 | background = 0.0 [1/cm] |
---|
[3c102d4] | 40 | axis_theta = 1.0 [rad] |
---|
| 41 | axis_phi = 1.0 [rad] |
---|
[975ec8e] | 42 | axis_psi = 0.0 [rad] |
---|
[5068697] | 43 | |
---|
| 44 | """ |
---|
| 45 | |
---|
| 46 | def __init__(self): |
---|
| 47 | """ Initialization """ |
---|
| 48 | |
---|
| 49 | # Initialize BaseComponent first, then sphere |
---|
| 50 | BaseComponent.__init__(self) |
---|
| 51 | CTriaxialEllipsoidModel.__init__(self) |
---|
| 52 | |
---|
| 53 | ## Name of the model |
---|
| 54 | self.name = "TriaxialEllipsoidModel" |
---|
| 55 | ## Model description |
---|
| 56 | self.description =""" Note: |
---|
| 57 | Constraints must be applied during fitting to ensure that the inequality a<b<c is not |
---|
| 58 | violated. The calculation will not report an error, but the results will not be correct.""" |
---|
| 59 | |
---|
| 60 | ## Parameter details [units, min, max] |
---|
| 61 | self.details = {} |
---|
| 62 | self.details['scale'] = ['', None, None] |
---|
| 63 | self.details['semi_axisA'] = ['[A]', None, None] |
---|
[3c102d4] | 64 | self.details['semi_axisB'] = ['[A]', None, None] |
---|
[5068697] | 65 | self.details['semi_axisC'] = ['[A]', None, None] |
---|
| 66 | self.details['contrast'] = ['[1/A²]', None, None] |
---|
| 67 | self.details['background'] = ['[1/cm]', None, None] |
---|
| 68 | self.details['axis_theta'] = ['[rad]', None, None] |
---|
| 69 | self.details['axis_phi'] = ['[rad]', None, None] |
---|
[975ec8e] | 70 | self.details['axis_psi'] = ['[rad]', None, None] |
---|
[5068697] | 71 | |
---|
| 72 | ## fittable parameters |
---|
[975ec8e] | 73 | self.fixed=['axis_psi.width', 'axis_phi.width', 'axis_theta.width', 'semi_axisA.width', 'semi_axisB.width', 'semi_axisC.width'] |
---|
[5068697] | 74 | |
---|
| 75 | ## parameters with orientation |
---|
[975ec8e] | 76 | self.orientation_params =['axis_psi', 'axis_phi', 'axis_theta', 'axis_psi.width', 'axis_phi.width', 'axis_theta.width'] |
---|
[5068697] | 77 | |
---|
| 78 | def clone(self): |
---|
| 79 | """ Return a identical copy of self """ |
---|
| 80 | return self._clone(TriaxialEllipsoidModel()) |
---|
| 81 | |
---|
| 82 | def run(self, x = 0.0): |
---|
| 83 | """ Evaluate the model |
---|
| 84 | @param x: input q, or [q,phi] |
---|
| 85 | @return: scattering function P(q) |
---|
| 86 | """ |
---|
| 87 | |
---|
| 88 | return CTriaxialEllipsoidModel.run(self, x) |
---|
| 89 | |
---|
| 90 | def runXY(self, x = 0.0): |
---|
| 91 | """ Evaluate the model in cartesian coordinates |
---|
| 92 | @param x: input q, or [qx, qy] |
---|
| 93 | @return: scattering function P(q) |
---|
| 94 | """ |
---|
| 95 | |
---|
| 96 | return CTriaxialEllipsoidModel.runXY(self, x) |
---|
| 97 | |
---|
[9bd69098] | 98 | def evalDistribition(self, x = []): |
---|
| 99 | """ Evaluate the model in cartesian coordinates |
---|
| 100 | @param x: input q[], or [qx[], qy[]] |
---|
| 101 | @return: scattering function P(q[]) |
---|
| 102 | """ |
---|
| 103 | return CTriaxialEllipsoidModel.evalDistribition(self, x) |
---|
| 104 | |
---|
[5eb9154] | 105 | def calculate_ER(self): |
---|
| 106 | """ Calculate the effective radius for P(q)*S(q) |
---|
| 107 | @return: the value of the effective radius |
---|
| 108 | """ |
---|
| 109 | return CTriaxialEllipsoidModel.calculate_ER(self) |
---|
| 110 | |
---|
[5068697] | 111 | def set_dispersion(self, parameter, dispersion): |
---|
| 112 | """ |
---|
| 113 | Set the dispersion object for a model parameter |
---|
| 114 | @param parameter: name of the parameter [string] |
---|
| 115 | @dispersion: dispersion object of type DispersionModel |
---|
| 116 | """ |
---|
| 117 | return CTriaxialEllipsoidModel.set_dispersion(self, parameter, dispersion.cdisp) |
---|
| 118 | |
---|
| 119 | |
---|
| 120 | # End of file |
---|