""" Unit tests for fitting module """ import unittest from sans.guitools.plottables import Theory1D from sans.guitools.plottables import Data1D from sans.fit.ScipyFitting import Parameter import math class testFitModule(unittest.TestCase): """ test fitting """ def testLoader(self): """ test module Load """ from sans.fit.Loader import Load load= Load() load.set_filename("testdata_line.txt") self.assertEqual(load.get_filename(),"testdata_line.txt") load.set_values() x=[] y=[] dx=[] dy=[] x,y,dx,dy = load.get_values() # test that values have been loaded self.assertNotEqual(x, None) self.assertNotEqual(y, []) self.assertNotEqual(dy, None) self.assertEqual(len(x),len(y)) self.assertEqual(len(dy),len(y)) # test data the two plottables contained values loaded data1 = Theory1D(x=[], y=[], dy=None) data2 = Data1D(x=[], y=[],dx=None, dy=None) data1.name = "data1" data2.name = "data2" load.load_data(data1) load.load_data(data2) for i in range(len(x)): self.assertEqual(data2.x[i],x[i]) self.assertEqual(data1.y[i],y[i]) self.assertEqual(data2.y[i],y[i]) self.assertEqual(data1.dx[i],dx[i]) self.assertEqual(data2.dy[i],dy[i]) self.assertEqual(data1.x[i],data2.x[i]) self.assertEqual(data2.y[i],data2.y[i]) def testfit_1Data_1Model(self): """ test fitting for one data and one model""" #load data from sans.fit.Loader import Load load= Load() load.set_filename("testdata_line.txt") load.set_values() data1 = Data1D(x=[], y=[],dx=None, dy=None) load.load_data(data1) #Importing the Fit module from sans.fit.Fitting import Fit fitter= Fit() fitter.fit_engine('scipy') engine = fitter.returnEngine() # Receives the type of model for the fitting from sans.guitools.LineModel import LineModel model = LineModel() #Do the fit SCIPY engine.set_data(data1,1) engine.set_model(model,1) chisqr1, out1, cov1=engine.fit({'A':2,'B':1},None,None) """ testing SCIPy results""" self.assert_(math.fabs(out1[1]-2.5)/math.sqrt(cov1[1][1]) < 2) self.assert_(math.fabs(out1[0]-4.0)/math.sqrt(cov1[0][0]) < 2) self.assert_(chisqr1/len(data1.x) < 2) # PARK fitter= Fit() fitter.fit_engine('park') engine = fitter.returnEngine() #Do the fit engine.set_data(data1,1) engine.set_model(model,1) engine.fit({'A':2,'B':1},None,None) """ self.assert_(math.fabs(out2[1]-2.5)/math.sqrt(cov2[1][1]) < 2) self.assert_(math.fabs(out2[0]-4.0)/math.sqrt(cov2[0][0]) < 2) self.assert_(chisqr2/len(data1.x) < 2) self.assertEqual(out1[1], out2[1]) self.assertEquals(out1[0], out2[0]) self.assertEquals(cov1[0][0], cov2[0][0]) self.assertEquals(cov1[1][1], cov2[1][1]) self.assertEquals(chisqr1, chisqr2) """ def testfit_2Data_1Model(self): """ test fitting for two set of data and one model""" from sans.fit.Loader import Load load= Load() #Load the first set of data load.set_filename("testdata1.txt") load.set_values() data1 = Data1D(x=[], y=[],dx=None, dy=None) load.load_data(data1) #Load the second set of data load.set_filename("testdata2.txt") load.set_values() data2 = Data1D(x=[], y=[],dx=None, dy=None) load.load_data(data2) #Importing the Fit module from sans.fit.Fitting import Fit fitter= Fit() # Receives the type of model for the fitting from sans.guitools.LineModel import LineModel model = LineModel() #set engine for scipy fitter.fit_engine('scipy') engine = fitter.returnEngine() #Do the fit engine.set_model(model,1) engine.set_data(data1,1) engine.set_data(data2,1) chisqr1, out1, cov1= engine.fit({'A':2,'B':1},None,None) """ Testing results for SCIPY""" self.assert_(math.fabs(out1[1]-2.5)/math.sqrt(cov1[1][1]) < 2) self.assert_(math.fabs(out1[0]-4.0)/math.sqrt(cov1[0][0]) < 2) self.assert_(chisqr1/len(data1.x+data2.x) < 2) #self.assert_(chisqr1/len(data2.x) < 2) #set engine for park fitter= Fit() fitter.fit_engine('park') engine = fitter.returnEngine() #Do the fit engine.set_data(data1,1) engine.set_model(model,1) engine.set_data(data2,1) engine.fit({'A':2,'B':1},None,None) """ chisqr2, out2, cov2= engine.fit({'A':2,'B':1},None,None) self.assert_(math.fabs(out2[1]-2.5)/math.sqrt(cov2[1][1]) < 2) self.assert_(math.fabs(out2[0]-4.0)/math.sqrt(cov2[0][0]) < 2) self.assert_(chisqr2/len(data1.x) < 2) self.assert_(chisqr2/len(data2.x) < 2) self.assertEqual(out1[0],out2[0]) self.assertEqual(out1[1],out2[1]) self.assertEqual(chisqr1,chisqr2) self.assertEqual(cov1[0][0],cov2[0][0]) self.assertEqual(cov1[1][1],cov2[1][1]) """ def test2models2dataonconstraint(self): """ test for 2 Models two data one constraint""" from sans.fit.Loader import Load load= Load() #Load the first set of data load.set_filename("testdata1.txt") load.set_values() data1 = Data1D(x=[], y=[],dx=None, dy=None) load.load_data(data1) #Load the second set of data load.set_filename("testdata2.txt") load.set_values() data2 = Data1D(x=[], y=[],dx=None, dy=None) load.load_data(data2) #Importing the Fit module from sans.fit.Fitting import Fit fitter= Fit() # Receives the type of model for the fitting from sans.guitools.LineModel import LineModel model1 = LineModel() model1.name='M1' model2 = LineModel() model2.name='M2' #set engine for scipy fitter.fit_engine('scipy') engine = fitter.returnEngine() #Do the fit engine.set_model(model1,1) engine.set_data(data1,1) engine.set_model(model2,2) engine.set_data(data2,2) try: engine.fit({'A':2,'B':1},None,None) except ValueError,msg: assert str(msg)=="cannot fit more than one model",'Message: <%s>'%(msg) #set engine for park fitter= Fit() fitter.fit_engine('park') engine = fitter.returnEngine() #Do the fit engine.set_data(data1,1) engine.set_param(model1,{'A':2,'B':1}) engine.set_model(model1,1) engine.set_param(model2,{'A':3,'B':'5*M1.B'}) engine.set_model(model2,2) engine.set_data(data2,2) engine.fit({'A':2,'B':1},None,None)