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59 | |
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60 | <div class="section" id="sas-calculator-package"> |
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61 | <h1>sas.calculator package</h1> |
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62 | <div class="section" id="submodules"> |
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63 | <h2>Submodules</h2> |
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64 | </div> |
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65 | <div class="section" id="module-sas.calculator.instrument"> |
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66 | <span id="sas-calculator-instrument-module"></span><h2>sas.calculator.instrument module</h2> |
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67 | <p>This module is a small tool to allow user to |
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68 | control instrumental parameters</p> |
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69 | <dl class="class"> |
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70 | <dt id="sas.calculator.instrument.Aperture"> |
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71 | <em class="property">class </em><tt class="descclassname">sas.calculator.instrument.</tt><tt class="descname">Aperture</tt><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Aperture"><span class="viewcode-link">[source]</span></a></dt> |
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72 | <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">object</span></tt></p> |
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73 | <p>An object class that defines the aperture variables</p> |
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74 | <dl class="method"> |
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75 | <dt id="sas.calculator.instrument.Aperture.set_sample_distance"> |
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76 | <tt class="descname">set_sample_distance</tt><big>(</big><em>distance=[]</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Aperture.set_sample_distance"><span class="viewcode-link">[source]</span></a></dt> |
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77 | <dd><p>Set the sample aperture distance</p> |
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78 | </dd></dl> |
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79 | |
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80 | <dl class="method"> |
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81 | <dt id="sas.calculator.instrument.Aperture.set_sample_size"> |
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82 | <tt class="descname">set_sample_size</tt><big>(</big><em>size=[]</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Aperture.set_sample_size"><span class="viewcode-link">[source]</span></a></dt> |
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83 | <dd><p>Set the sample aperture size</p> |
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84 | </dd></dl> |
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85 | |
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86 | <dl class="method"> |
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87 | <dt id="sas.calculator.instrument.Aperture.set_source_size"> |
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88 | <tt class="descname">set_source_size</tt><big>(</big><em>size=[]</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Aperture.set_source_size"><span class="viewcode-link">[source]</span></a></dt> |
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89 | <dd><p>Set the source aperture size</p> |
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90 | </dd></dl> |
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91 | |
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92 | </dd></dl> |
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93 | |
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94 | <dl class="class"> |
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95 | <dt id="sas.calculator.instrument.Detector"> |
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96 | <em class="property">class </em><tt class="descclassname">sas.calculator.instrument.</tt><tt class="descname">Detector</tt><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Detector"><span class="viewcode-link">[source]</span></a></dt> |
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97 | <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">object</span></tt></p> |
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98 | <p>An object class that defines the detector variables</p> |
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99 | <dl class="method"> |
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100 | <dt id="sas.calculator.instrument.Detector.set_distance"> |
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101 | <tt class="descname">set_distance</tt><big>(</big><em>distance=[]</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Detector.set_distance"><span class="viewcode-link">[source]</span></a></dt> |
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102 | <dd><p>Set the detector distance</p> |
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103 | </dd></dl> |
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104 | |
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105 | <dl class="method"> |
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106 | <dt id="sas.calculator.instrument.Detector.set_pix_size"> |
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107 | <tt class="descname">set_pix_size</tt><big>(</big><em>size=[]</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Detector.set_pix_size"><span class="viewcode-link">[source]</span></a></dt> |
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108 | <dd><p>Set the detector pix_size</p> |
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109 | </dd></dl> |
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110 | |
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111 | <dl class="method"> |
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112 | <dt id="sas.calculator.instrument.Detector.set_size"> |
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113 | <tt class="descname">set_size</tt><big>(</big><em>size=[]</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Detector.set_size"><span class="viewcode-link">[source]</span></a></dt> |
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114 | <dd><p>Set the detector size</p> |
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115 | </dd></dl> |
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116 | |
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117 | </dd></dl> |
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118 | |
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119 | <dl class="class"> |
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120 | <dt id="sas.calculator.instrument.Neutron"> |
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121 | <em class="property">class </em><tt class="descclassname">sas.calculator.instrument.</tt><tt class="descname">Neutron</tt><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron"><span class="viewcode-link">[source]</span></a></dt> |
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122 | <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">object</span></tt></p> |
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123 | <p>An object that defines the wavelength variables</p> |
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124 | <dl class="method"> |
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125 | <dt id="sas.calculator.instrument.Neutron.get_band"> |
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126 | <tt class="descname">get_band</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.get_band"><span class="viewcode-link">[source]</span></a></dt> |
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127 | <dd><p>To get the wavelength band</p> |
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128 | </dd></dl> |
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129 | |
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130 | <dl class="method"> |
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131 | <dt id="sas.calculator.instrument.Neutron.get_default_spectrum"> |
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132 | <tt class="descname">get_default_spectrum</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.get_default_spectrum"><span class="viewcode-link">[source]</span></a></dt> |
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133 | <dd><p>get default spectrum</p> |
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134 | </dd></dl> |
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135 | |
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136 | <dl class="method"> |
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137 | <dt id="sas.calculator.instrument.Neutron.get_intensity"> |
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138 | <tt class="descname">get_intensity</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.get_intensity"><span class="viewcode-link">[source]</span></a></dt> |
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139 | <dd><p>To get the value of intensity</p> |
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140 | </dd></dl> |
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141 | |
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142 | <dl class="method"> |
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143 | <dt id="sas.calculator.instrument.Neutron.get_mass"> |
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144 | <tt class="descname">get_mass</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.get_mass"><span class="viewcode-link">[source]</span></a></dt> |
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145 | <dd><p>To get the neutron mass</p> |
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146 | </dd></dl> |
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147 | |
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148 | <dl class="method"> |
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149 | <dt id="sas.calculator.instrument.Neutron.get_ramdom_value"> |
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150 | <tt class="descname">get_ramdom_value</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.get_ramdom_value"><span class="viewcode-link">[source]</span></a></dt> |
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151 | <dd><p>To get the value of wave length</p> |
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152 | </dd></dl> |
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153 | |
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154 | <dl class="method"> |
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155 | <dt id="sas.calculator.instrument.Neutron.get_spectrum"> |
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156 | <tt class="descname">get_spectrum</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.get_spectrum"><span class="viewcode-link">[source]</span></a></dt> |
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157 | <dd><p>To get the wavelength spectrum</p> |
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158 | </dd></dl> |
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159 | |
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160 | <dl class="method"> |
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161 | <dt id="sas.calculator.instrument.Neutron.get_wavelength"> |
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162 | <tt class="descname">get_wavelength</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.get_wavelength"><span class="viewcode-link">[source]</span></a></dt> |
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163 | <dd><p>To get the value of wavelength</p> |
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164 | </dd></dl> |
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165 | |
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166 | <dl class="method"> |
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167 | <dt id="sas.calculator.instrument.Neutron.get_wavelength_spread"> |
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168 | <tt class="descname">get_wavelength_spread</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.get_wavelength_spread"><span class="viewcode-link">[source]</span></a></dt> |
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169 | <dd><p>To get the value of wavelength spread</p> |
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170 | </dd></dl> |
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171 | |
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172 | <dl class="method"> |
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173 | <dt id="sas.calculator.instrument.Neutron.plot_spectrum"> |
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174 | <tt class="descname">plot_spectrum</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.plot_spectrum"><span class="viewcode-link">[source]</span></a></dt> |
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175 | <dd><p>To plot the wavelength spactrum |
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176 | : requirment: matplotlib.pyplot</p> |
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177 | </dd></dl> |
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178 | |
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179 | <dl class="method"> |
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180 | <dt id="sas.calculator.instrument.Neutron.set_band"> |
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181 | <tt class="descname">set_band</tt><big>(</big><em>band=[]</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.set_band"><span class="viewcode-link">[source]</span></a></dt> |
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182 | <dd><p>To set the wavelength band</p> |
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183 | <table class="docutils field-list" frame="void" rules="none"> |
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184 | <col class="field-name" /> |
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185 | <col class="field-body" /> |
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186 | <tbody valign="top"> |
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187 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>band</strong> – array of [min, max]</td> |
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188 | </tr> |
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189 | </tbody> |
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190 | </table> |
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191 | </dd></dl> |
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192 | |
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193 | <dl class="method"> |
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194 | <dt id="sas.calculator.instrument.Neutron.set_full_band"> |
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195 | <tt class="descname">set_full_band</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.set_full_band"><span class="viewcode-link">[source]</span></a></dt> |
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196 | <dd><p>set band to default value</p> |
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197 | </dd></dl> |
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198 | |
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199 | <dl class="method"> |
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200 | <dt id="sas.calculator.instrument.Neutron.set_intensity"> |
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201 | <tt class="descname">set_intensity</tt><big>(</big><em>intensity=368428</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.set_intensity"><span class="viewcode-link">[source]</span></a></dt> |
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202 | <dd><p>Sets the intensity in counts/sec</p> |
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203 | </dd></dl> |
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204 | |
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205 | <dl class="method"> |
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206 | <dt id="sas.calculator.instrument.Neutron.set_mass"> |
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207 | <tt class="descname">set_mass</tt><big>(</big><em>mass=1.67492729e-24</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.set_mass"><span class="viewcode-link">[source]</span></a></dt> |
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208 | <dd><p>Sets the wavelength</p> |
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209 | </dd></dl> |
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210 | |
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211 | <dl class="method"> |
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212 | <dt id="sas.calculator.instrument.Neutron.set_spectrum"> |
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213 | <tt class="descname">set_spectrum</tt><big>(</big><em>spectrum</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.set_spectrum"><span class="viewcode-link">[source]</span></a></dt> |
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214 | <dd><p>Set spectrum</p> |
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215 | <table class="docutils field-list" frame="void" rules="none"> |
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216 | <col class="field-name" /> |
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217 | <col class="field-body" /> |
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218 | <tbody valign="top"> |
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219 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>spectrum</strong> – numpy array</td> |
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220 | </tr> |
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221 | </tbody> |
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222 | </table> |
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223 | </dd></dl> |
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224 | |
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225 | <dl class="method"> |
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226 | <dt id="sas.calculator.instrument.Neutron.set_wavelength"> |
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227 | <tt class="descname">set_wavelength</tt><big>(</big><em>wavelength=6.0</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.set_wavelength"><span class="viewcode-link">[source]</span></a></dt> |
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228 | <dd><p>Sets the wavelength</p> |
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229 | </dd></dl> |
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230 | |
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231 | <dl class="method"> |
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232 | <dt id="sas.calculator.instrument.Neutron.set_wavelength_spread"> |
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233 | <tt class="descname">set_wavelength_spread</tt><big>(</big><em>spread=0.125</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.set_wavelength_spread"><span class="viewcode-link">[source]</span></a></dt> |
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234 | <dd><p>Sets the wavelength spread</p> |
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235 | </dd></dl> |
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236 | |
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237 | <dl class="method"> |
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238 | <dt id="sas.calculator.instrument.Neutron.setup_spectrum"> |
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239 | <tt class="descname">setup_spectrum</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Neutron.setup_spectrum"><span class="viewcode-link">[source]</span></a></dt> |
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240 | <dd><p>To set the wavelength spectrum, and intensity, assumes |
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241 | wavelength is already within the spectrum</p> |
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242 | </dd></dl> |
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243 | |
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244 | </dd></dl> |
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245 | |
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246 | <dl class="class"> |
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247 | <dt id="sas.calculator.instrument.Sample"> |
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248 | <em class="property">class </em><tt class="descclassname">sas.calculator.instrument.</tt><tt class="descname">Sample</tt><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Sample"><span class="viewcode-link">[source]</span></a></dt> |
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249 | <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">object</span></tt></p> |
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250 | <p>An object class that defines the sample variables</p> |
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251 | <dl class="method"> |
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252 | <dt id="sas.calculator.instrument.Sample.set_distance"> |
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253 | <tt class="descname">set_distance</tt><big>(</big><em>distance=[]</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Sample.set_distance"><span class="viewcode-link">[source]</span></a></dt> |
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254 | <dd><p>Set the sample distance</p> |
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255 | </dd></dl> |
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256 | |
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257 | <dl class="method"> |
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258 | <dt id="sas.calculator.instrument.Sample.set_size"> |
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259 | <tt class="descname">set_size</tt><big>(</big><em>size=[]</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Sample.set_size"><span class="viewcode-link">[source]</span></a></dt> |
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260 | <dd><p>Set the sample size</p> |
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261 | </dd></dl> |
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262 | |
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263 | <dl class="method"> |
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264 | <dt id="sas.calculator.instrument.Sample.set_thickness"> |
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265 | <tt class="descname">set_thickness</tt><big>(</big><em>thickness=0.0</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#Sample.set_thickness"><span class="viewcode-link">[source]</span></a></dt> |
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266 | <dd><p>Set the sample thickness</p> |
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267 | </dd></dl> |
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268 | |
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269 | </dd></dl> |
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270 | |
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271 | <dl class="class"> |
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272 | <dt id="sas.calculator.instrument.TOF"> |
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273 | <em class="property">class </em><tt class="descclassname">sas.calculator.instrument.</tt><tt class="descname">TOF</tt><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#TOF"><span class="viewcode-link">[source]</span></a></dt> |
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274 | <dd><p>Bases: <a class="reference internal" href="#sas.calculator.instrument.Neutron" title="sas.calculator.instrument.Neutron"><tt class="xref py py-class docutils literal"><span class="pre">sas.calculator.instrument.Neutron</span></tt></a></p> |
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275 | <p>TOF: make list of wavelength and wave length spreads</p> |
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276 | <dl class="method"> |
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277 | <dt id="sas.calculator.instrument.TOF.get_intensity_list"> |
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278 | <tt class="descname">get_intensity_list</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#TOF.get_intensity_list"><span class="viewcode-link">[source]</span></a></dt> |
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279 | <dd><p>get list of the intensity wrt wavelength_list</p> |
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280 | </dd></dl> |
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281 | |
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282 | <dl class="method"> |
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283 | <dt id="sas.calculator.instrument.TOF.get_wave_list"> |
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284 | <tt class="descname">get_wave_list</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#TOF.get_wave_list"><span class="viewcode-link">[source]</span></a></dt> |
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285 | <dd><p>Get wavelength and wavelength_spread list</p> |
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286 | </dd></dl> |
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287 | |
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288 | <dl class="method"> |
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289 | <dt id="sas.calculator.instrument.TOF.set_wave_list"> |
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290 | <tt class="descname">set_wave_list</tt><big>(</big><em>wavelength=[]</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#TOF.set_wave_list"><span class="viewcode-link">[source]</span></a></dt> |
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291 | <dd><p>Set wavelength list</p> |
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292 | <table class="docutils field-list" frame="void" rules="none"> |
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293 | <col class="field-name" /> |
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294 | <col class="field-body" /> |
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295 | <tbody valign="top"> |
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296 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>wavelength</strong> – list of wavelengths</td> |
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297 | </tr> |
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298 | </tbody> |
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299 | </table> |
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300 | </dd></dl> |
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301 | |
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302 | <dl class="method"> |
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303 | <dt id="sas.calculator.instrument.TOF.set_wave_spread_list"> |
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304 | <tt class="descname">set_wave_spread_list</tt><big>(</big><em>wavelength_spread=[]</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#TOF.set_wave_spread_list"><span class="viewcode-link">[source]</span></a></dt> |
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305 | <dd><p>Set wavelength_spread list</p> |
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306 | <table class="docutils field-list" frame="void" rules="none"> |
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307 | <col class="field-name" /> |
---|
308 | <col class="field-body" /> |
---|
309 | <tbody valign="top"> |
---|
310 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>wavelength_spread</strong> – list of wavelength spreads</td> |
---|
311 | </tr> |
---|
312 | </tbody> |
---|
313 | </table> |
---|
314 | </dd></dl> |
---|
315 | |
---|
316 | </dd></dl> |
---|
317 | |
---|
318 | <dl class="function"> |
---|
319 | <dt id="sas.calculator.instrument.validate"> |
---|
320 | <tt class="descclassname">sas.calculator.instrument.</tt><tt class="descname">validate</tt><big>(</big><em>value=None</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/instrument.html#validate"><span class="viewcode-link">[source]</span></a></dt> |
---|
321 | <dd><p>Check if the value is folat > 0.0</p> |
---|
322 | <table class="docutils field-list" frame="void" rules="none"> |
---|
323 | <col class="field-name" /> |
---|
324 | <col class="field-body" /> |
---|
325 | <tbody valign="top"> |
---|
326 | <tr class="field-odd field"><th class="field-name">Return value:</th><td class="field-body">True / False</td> |
---|
327 | </tr> |
---|
328 | </tbody> |
---|
329 | </table> |
---|
330 | </dd></dl> |
---|
331 | |
---|
332 | </div> |
---|
333 | <div class="section" id="module-sas.calculator.kiessig_calculator"> |
---|
334 | <span id="sas-calculator-kiessig-calculator-module"></span><h2>sas.calculator.kiessig_calculator module</h2> |
---|
335 | <p>This module is a small tool to allow user to quickly |
---|
336 | determine the size value in real space from the |
---|
337 | fringe width in q space.</p> |
---|
338 | <dl class="class"> |
---|
339 | <dt id="sas.calculator.kiessig_calculator.KiessigThicknessCalculator"> |
---|
340 | <em class="property">class </em><tt class="descclassname">sas.calculator.kiessig_calculator.</tt><tt class="descname">KiessigThicknessCalculator</tt><a class="reference internal" href="../../_modules/sas/calculator/kiessig_calculator.html#KiessigThicknessCalculator"><span class="viewcode-link">[source]</span></a></dt> |
---|
341 | <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">object</span></tt></p> |
---|
342 | <p>compute thickness from the fringe width of data</p> |
---|
343 | <dl class="method"> |
---|
344 | <dt id="sas.calculator.kiessig_calculator.KiessigThicknessCalculator.compute_thickness"> |
---|
345 | <tt class="descname">compute_thickness</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/kiessig_calculator.html#KiessigThicknessCalculator.compute_thickness"><span class="viewcode-link">[source]</span></a></dt> |
---|
346 | <dd><p>Calculate thickness.</p> |
---|
347 | <table class="docutils field-list" frame="void" rules="none"> |
---|
348 | <col class="field-name" /> |
---|
349 | <col class="field-body" /> |
---|
350 | <tbody valign="top"> |
---|
351 | <tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">the thickness.</td> |
---|
352 | </tr> |
---|
353 | </tbody> |
---|
354 | </table> |
---|
355 | </dd></dl> |
---|
356 | |
---|
357 | <dl class="method"> |
---|
358 | <dt id="sas.calculator.kiessig_calculator.KiessigThicknessCalculator.get_deltaq"> |
---|
359 | <tt class="descname">get_deltaq</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/kiessig_calculator.html#KiessigThicknessCalculator.get_deltaq"><span class="viewcode-link">[source]</span></a></dt> |
---|
360 | <dd><p>return deltaQ value in 1/A unit</p> |
---|
361 | </dd></dl> |
---|
362 | |
---|
363 | <dl class="method"> |
---|
364 | <dt id="sas.calculator.kiessig_calculator.KiessigThicknessCalculator.get_thickness_unit"> |
---|
365 | <tt class="descname">get_thickness_unit</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/kiessig_calculator.html#KiessigThicknessCalculator.get_thickness_unit"><span class="viewcode-link">[source]</span></a></dt> |
---|
366 | <dd><table class="docutils field-list" frame="void" rules="none"> |
---|
367 | <col class="field-name" /> |
---|
368 | <col class="field-body" /> |
---|
369 | <tbody valign="top"> |
---|
370 | <tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">the thickness unit.</td> |
---|
371 | </tr> |
---|
372 | </tbody> |
---|
373 | </table> |
---|
374 | </dd></dl> |
---|
375 | |
---|
376 | <dl class="method"> |
---|
377 | <dt id="sas.calculator.kiessig_calculator.KiessigThicknessCalculator.set_deltaq"> |
---|
378 | <tt class="descname">set_deltaq</tt><big>(</big><em>dq=None</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/kiessig_calculator.html#KiessigThicknessCalculator.set_deltaq"><span class="viewcode-link">[source]</span></a></dt> |
---|
379 | <dd><p>Receive deltaQ value</p> |
---|
380 | <table class="docutils field-list" frame="void" rules="none"> |
---|
381 | <col class="field-name" /> |
---|
382 | <col class="field-body" /> |
---|
383 | <tbody valign="top"> |
---|
384 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>dq</strong> – q fringe width in 1/A unit</td> |
---|
385 | </tr> |
---|
386 | </tbody> |
---|
387 | </table> |
---|
388 | </dd></dl> |
---|
389 | |
---|
390 | </dd></dl> |
---|
391 | |
---|
392 | </div> |
---|
393 | <div class="section" id="module-sas.calculator.resolution_calculator"> |
---|
394 | <span id="sas-calculator-resolution-calculator-module"></span><h2>sas.calculator.resolution_calculator module</h2> |
---|
395 | <p>This object is a small tool to allow user to quickly |
---|
396 | determine the variance in q from the |
---|
397 | instrumental parameters.</p> |
---|
398 | <dl class="class"> |
---|
399 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator"> |
---|
400 | <em class="property">class </em><tt class="descclassname">sas.calculator.resolution_calculator.</tt><tt class="descname">ResolutionCalculator</tt><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator"><span class="viewcode-link">[source]</span></a></dt> |
---|
401 | <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">object</span></tt></p> |
---|
402 | <p>compute resolution in 2D</p> |
---|
403 | <dl class="method"> |
---|
404 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.compute"> |
---|
405 | <tt class="descname">compute</tt><big>(</big><em>wavelength</em>, <em>wavelength_spread</em>, <em>qx_value</em>, <em>qy_value</em>, <em>coord='cartesian'</em>, <em>tof=False</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.compute"><span class="viewcode-link">[source]</span></a></dt> |
---|
406 | <dd><p>Compute the Q resoltuion in || and + direction of 2D |
---|
407 | : qx_value: x component of q |
---|
408 | : qy_value: y component of q</p> |
---|
409 | </dd></dl> |
---|
410 | |
---|
411 | <dl class="method"> |
---|
412 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.compute_and_plot"> |
---|
413 | <tt class="descname">compute_and_plot</tt><big>(</big><em>qx_value</em>, <em>qy_value</em>, <em>qx_min</em>, <em>qx_max</em>, <em>qy_min</em>, <em>qy_max</em>, <em>coord='cartesian'</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.compute_and_plot"><span class="viewcode-link">[source]</span></a></dt> |
---|
414 | <dd><p>Compute the resolution |
---|
415 | : qx_value: x component of q |
---|
416 | : qy_value: y component of q</p> |
---|
417 | </dd></dl> |
---|
418 | |
---|
419 | <dl class="method"> |
---|
420 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_all_instrument_params"> |
---|
421 | <tt class="descname">get_all_instrument_params</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_all_instrument_params"><span class="viewcode-link">[source]</span></a></dt> |
---|
422 | <dd><p>Get all instrumental parameters</p> |
---|
423 | </dd></dl> |
---|
424 | |
---|
425 | <dl class="method"> |
---|
426 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_default_spectrum"> |
---|
427 | <tt class="descname">get_default_spectrum</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_default_spectrum"><span class="viewcode-link">[source]</span></a></dt> |
---|
428 | <dd><p>Get default_spectrum</p> |
---|
429 | </dd></dl> |
---|
430 | |
---|
431 | <dl class="method"> |
---|
432 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_detector_pix_size"> |
---|
433 | <tt class="descname">get_detector_pix_size</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_detector_pix_size"><span class="viewcode-link">[source]</span></a></dt> |
---|
434 | <dd><p>Get detector pixel size</p> |
---|
435 | </dd></dl> |
---|
436 | |
---|
437 | <dl class="method"> |
---|
438 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_detector_qrange"> |
---|
439 | <tt class="descname">get_detector_qrange</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_detector_qrange"><span class="viewcode-link">[source]</span></a></dt> |
---|
440 | <dd><p>get max detector q ranges</p> |
---|
441 | <p>: return: qx_min, qx_max, qy_min, qy_max tuple</p> |
---|
442 | </dd></dl> |
---|
443 | |
---|
444 | <dl class="method"> |
---|
445 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_detector_size"> |
---|
446 | <tt class="descname">get_detector_size</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_detector_size"><span class="viewcode-link">[source]</span></a></dt> |
---|
447 | <dd><p>Get detector size</p> |
---|
448 | </dd></dl> |
---|
449 | |
---|
450 | <dl class="method"> |
---|
451 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_image"> |
---|
452 | <tt class="descname">get_image</tt><big>(</big><em>qx_value</em>, <em>qy_value</em>, <em>sigma_1</em>, <em>sigma_2</em>, <em>sigma_r</em>, <em>qx_min</em>, <em>qx_max</em>, <em>qy_min</em>, <em>qy_max</em>, <em>coord='cartesian'</em>, <em>full_cal=True</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_image"><span class="viewcode-link">[source]</span></a></dt> |
---|
453 | <dd><p>Get the resolution in polar coordinate ready to plot |
---|
454 | : qx_value: qx_value value |
---|
455 | : qy_value: qy_value value |
---|
456 | : sigma_1: variance in r direction |
---|
457 | : sigma_2: variance in phi direction |
---|
458 | : coord: coordinate system of image, ‘polar’ or ‘cartesian’</p> |
---|
459 | </dd></dl> |
---|
460 | |
---|
461 | <dl class="method"> |
---|
462 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_intensity"> |
---|
463 | <tt class="descname">get_intensity</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_intensity"><span class="viewcode-link">[source]</span></a></dt> |
---|
464 | <dd><p>Get intensity</p> |
---|
465 | </dd></dl> |
---|
466 | |
---|
467 | <dl class="method"> |
---|
468 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_intensity_list"> |
---|
469 | <tt class="descname">get_intensity_list</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_intensity_list"><span class="viewcode-link">[source]</span></a></dt> |
---|
470 | <dd><p>Set wavelength spread</p> |
---|
471 | </dd></dl> |
---|
472 | |
---|
473 | <dl class="method"> |
---|
474 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_neutron_mass"> |
---|
475 | <tt class="descname">get_neutron_mass</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_neutron_mass"><span class="viewcode-link">[source]</span></a></dt> |
---|
476 | <dd><p>Get Neutron mass</p> |
---|
477 | </dd></dl> |
---|
478 | |
---|
479 | <dl class="method"> |
---|
480 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_sample2detector_distance"> |
---|
481 | <tt class="descname">get_sample2detector_distance</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_sample2detector_distance"><span class="viewcode-link">[source]</span></a></dt> |
---|
482 | <dd><p>Get detector sample2detector_distance</p> |
---|
483 | </dd></dl> |
---|
484 | |
---|
485 | <dl class="method"> |
---|
486 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_sample2sample_distance"> |
---|
487 | <tt class="descname">get_sample2sample_distance</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_sample2sample_distance"><span class="viewcode-link">[source]</span></a></dt> |
---|
488 | <dd><p>Get detector sampleslitsample_distance</p> |
---|
489 | </dd></dl> |
---|
490 | |
---|
491 | <dl class="method"> |
---|
492 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_sample_aperture_size"> |
---|
493 | <tt class="descname">get_sample_aperture_size</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_sample_aperture_size"><span class="viewcode-link">[source]</span></a></dt> |
---|
494 | <dd><p>Get sample aperture size</p> |
---|
495 | </dd></dl> |
---|
496 | |
---|
497 | <dl class="method"> |
---|
498 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_source2sample_distance"> |
---|
499 | <tt class="descname">get_source2sample_distance</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_source2sample_distance"><span class="viewcode-link">[source]</span></a></dt> |
---|
500 | <dd><p>Get detector source2sample_distance</p> |
---|
501 | </dd></dl> |
---|
502 | |
---|
503 | <dl class="method"> |
---|
504 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_source_aperture_size"> |
---|
505 | <tt class="descname">get_source_aperture_size</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_source_aperture_size"><span class="viewcode-link">[source]</span></a></dt> |
---|
506 | <dd><p>Get source aperture size</p> |
---|
507 | </dd></dl> |
---|
508 | |
---|
509 | <dl class="method"> |
---|
510 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_spectrum"> |
---|
511 | <tt class="descname">get_spectrum</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_spectrum"><span class="viewcode-link">[source]</span></a></dt> |
---|
512 | <dd><p>Get _spectrum</p> |
---|
513 | </dd></dl> |
---|
514 | |
---|
515 | <dl class="method"> |
---|
516 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_variance"> |
---|
517 | <tt class="descname">get_variance</tt><big>(</big><em>size=[]</em>, <em>distance=0</em>, <em>phi=0</em>, <em>comp='radial'</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_variance"><span class="viewcode-link">[source]</span></a></dt> |
---|
518 | <dd><p>Get the variance when the slit/pinhole size is given |
---|
519 | : size: list that can be one(diameter for circular) or two components(lengths for rectangular) |
---|
520 | : distance: [z, x] where z along the incident beam, x // qx_value |
---|
521 | : comp: direction of the sigma; can be ‘phi’, ‘y’, ‘x’, and ‘radial’</p> |
---|
522 | <p>: return variance: sigma^2</p> |
---|
523 | </dd></dl> |
---|
524 | |
---|
525 | <dl class="method"> |
---|
526 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_variance_gravity"> |
---|
527 | <tt class="descname">get_variance_gravity</tt><big>(</big><em>s_distance</em>, <em>d_distance</em>, <em>wavelength</em>, <em>spread</em>, <em>phi</em>, <em>comp='radial'</em>, <em>switch='on'</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_variance_gravity"><span class="viewcode-link">[source]</span></a></dt> |
---|
528 | <dd><p>Get the variance from gravity when the wavelength spread is given</p> |
---|
529 | <p>: s_distance: source to sample distance |
---|
530 | : d_distance: sample to detector distance |
---|
531 | : wavelength: wavelength |
---|
532 | : spread: wavelength spread (ratio) |
---|
533 | : comp: direction of the sigma; can be ‘phi’, ‘y’, ‘x’, and ‘radial’</p> |
---|
534 | <p>: return variance: sigma^2</p> |
---|
535 | </dd></dl> |
---|
536 | |
---|
537 | <dl class="method"> |
---|
538 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_variance_wave"> |
---|
539 | <tt class="descname">get_variance_wave</tt><big>(</big><em>A_value</em>, <em>radius</em>, <em>distance</em>, <em>spread</em>, <em>phi</em>, <em>comp='radial'</em>, <em>switch='on'</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_variance_wave"><span class="viewcode-link">[source]</span></a></dt> |
---|
540 | <dd><p>Get the variance when the wavelength spread is given</p> |
---|
541 | <p>: radius: the radial distance from the beam center to the pix of q |
---|
542 | : distance: sample to detector distance |
---|
543 | : spread: wavelength spread (ratio) |
---|
544 | : comp: direction of the sigma; can be ‘phi’, ‘y’, ‘x’, and ‘radial’</p> |
---|
545 | <p>: return variance: sigma^2 for 2d, sigma^2 for 1d [tuple]</p> |
---|
546 | </dd></dl> |
---|
547 | |
---|
548 | <dl class="method"> |
---|
549 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_wave_list"> |
---|
550 | <tt class="descname">get_wave_list</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_wave_list"><span class="viewcode-link">[source]</span></a></dt> |
---|
551 | <dd><p>Set wavelength spread</p> |
---|
552 | </dd></dl> |
---|
553 | |
---|
554 | <dl class="method"> |
---|
555 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_wavelength"> |
---|
556 | <tt class="descname">get_wavelength</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_wavelength"><span class="viewcode-link">[source]</span></a></dt> |
---|
557 | <dd><p>Get wavelength</p> |
---|
558 | </dd></dl> |
---|
559 | |
---|
560 | <dl class="method"> |
---|
561 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.get_wavelength_spread"> |
---|
562 | <tt class="descname">get_wavelength_spread</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.get_wavelength_spread"><span class="viewcode-link">[source]</span></a></dt> |
---|
563 | <dd><p>Get wavelength spread</p> |
---|
564 | </dd></dl> |
---|
565 | |
---|
566 | <dl class="method"> |
---|
567 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.plot_image"> |
---|
568 | <tt class="descname">plot_image</tt><big>(</big><em>image</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.plot_image"><span class="viewcode-link">[source]</span></a></dt> |
---|
569 | <dd><p>Plot image using pyplot |
---|
570 | : image: 2d resolution image</p> |
---|
571 | <p>: return plt: pylab object</p> |
---|
572 | </dd></dl> |
---|
573 | |
---|
574 | <dl class="method"> |
---|
575 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.reset_image"> |
---|
576 | <tt class="descname">reset_image</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.reset_image"><span class="viewcode-link">[source]</span></a></dt> |
---|
577 | <dd><p>Reset image to default (=[])</p> |
---|
578 | </dd></dl> |
---|
579 | |
---|
580 | <dl class="method"> |
---|
581 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_detector_pix_size"> |
---|
582 | <tt class="descname">set_detector_pix_size</tt><big>(</big><em>size</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_detector_pix_size"><span class="viewcode-link">[source]</span></a></dt> |
---|
583 | <dd><p>Set detector pixel size</p> |
---|
584 | </dd></dl> |
---|
585 | |
---|
586 | <dl class="method"> |
---|
587 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_detector_size"> |
---|
588 | <tt class="descname">set_detector_size</tt><big>(</big><em>size</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_detector_size"><span class="viewcode-link">[source]</span></a></dt> |
---|
589 | <dd><p>Set detector size in number of pixels |
---|
590 | : param size: [pixel_nums] or [x_pix_num, yx_pix_num]</p> |
---|
591 | </dd></dl> |
---|
592 | |
---|
593 | <dl class="method"> |
---|
594 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_intensity"> |
---|
595 | <tt class="descname">set_intensity</tt><big>(</big><em>intensity</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_intensity"><span class="viewcode-link">[source]</span></a></dt> |
---|
596 | <dd><p>Set intensity</p> |
---|
597 | </dd></dl> |
---|
598 | |
---|
599 | <dl class="method"> |
---|
600 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_neutron_mass"> |
---|
601 | <tt class="descname">set_neutron_mass</tt><big>(</big><em>mass</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_neutron_mass"><span class="viewcode-link">[source]</span></a></dt> |
---|
602 | <dd><p>Set Neutron mass</p> |
---|
603 | </dd></dl> |
---|
604 | |
---|
605 | <dl class="method"> |
---|
606 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_sample2detector_distance"> |
---|
607 | <tt class="descname">set_sample2detector_distance</tt><big>(</big><em>distance</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_sample2detector_distance"><span class="viewcode-link">[source]</span></a></dt> |
---|
608 | <dd><p>Set detector sample2detector_distance</p> |
---|
609 | <p>: param distance: [distance, x_offset]</p> |
---|
610 | </dd></dl> |
---|
611 | |
---|
612 | <dl class="method"> |
---|
613 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_sample2sample_distance"> |
---|
614 | <tt class="descname">set_sample2sample_distance</tt><big>(</big><em>distance</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_sample2sample_distance"><span class="viewcode-link">[source]</span></a></dt> |
---|
615 | <dd><p>Set detector sample_slit2sample_distance</p> |
---|
616 | <p>: param distance: [distance, x_offset]</p> |
---|
617 | </dd></dl> |
---|
618 | |
---|
619 | <dl class="method"> |
---|
620 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_sample_aperture_size"> |
---|
621 | <tt class="descname">set_sample_aperture_size</tt><big>(</big><em>size</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_sample_aperture_size"><span class="viewcode-link">[source]</span></a></dt> |
---|
622 | <dd><p>Set sample aperture size</p> |
---|
623 | <p>: param size: [dia_value] or [xheight_value, yheight_value]</p> |
---|
624 | </dd></dl> |
---|
625 | |
---|
626 | <dl class="method"> |
---|
627 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_source2sample_distance"> |
---|
628 | <tt class="descname">set_source2sample_distance</tt><big>(</big><em>distance</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_source2sample_distance"><span class="viewcode-link">[source]</span></a></dt> |
---|
629 | <dd><p>Set detector source2sample_distance</p> |
---|
630 | <p>: param distance: [distance, x_offset]</p> |
---|
631 | </dd></dl> |
---|
632 | |
---|
633 | <dl class="method"> |
---|
634 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_source_aperture_size"> |
---|
635 | <tt class="descname">set_source_aperture_size</tt><big>(</big><em>size</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_source_aperture_size"><span class="viewcode-link">[source]</span></a></dt> |
---|
636 | <dd><p>Set source aperture size</p> |
---|
637 | <p>: param size: [dia_value] or [x_value, y_value]</p> |
---|
638 | </dd></dl> |
---|
639 | |
---|
640 | <dl class="method"> |
---|
641 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_spectrum"> |
---|
642 | <tt class="descname">set_spectrum</tt><big>(</big><em>spectrum</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_spectrum"><span class="viewcode-link">[source]</span></a></dt> |
---|
643 | <dd><p>Set spectrum</p> |
---|
644 | </dd></dl> |
---|
645 | |
---|
646 | <dl class="method"> |
---|
647 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_wave"> |
---|
648 | <tt class="descname">set_wave</tt><big>(</big><em>wavelength</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_wave"><span class="viewcode-link">[source]</span></a></dt> |
---|
649 | <dd><p>Set wavelength list or wavelength</p> |
---|
650 | </dd></dl> |
---|
651 | |
---|
652 | <dl class="method"> |
---|
653 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_wave_list"> |
---|
654 | <tt class="descname">set_wave_list</tt><big>(</big><em>wavelength_list</em>, <em>wavelengthspread_list</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_wave_list"><span class="viewcode-link">[source]</span></a></dt> |
---|
655 | <dd><p>Set wavelength and its spread list</p> |
---|
656 | </dd></dl> |
---|
657 | |
---|
658 | <dl class="method"> |
---|
659 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_wave_spread"> |
---|
660 | <tt class="descname">set_wave_spread</tt><big>(</big><em>wavelength_spread</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_wave_spread"><span class="viewcode-link">[source]</span></a></dt> |
---|
661 | <dd><p>Set wavelength spread or wavelength spread</p> |
---|
662 | </dd></dl> |
---|
663 | |
---|
664 | <dl class="method"> |
---|
665 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_wavelength"> |
---|
666 | <tt class="descname">set_wavelength</tt><big>(</big><em>wavelength</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_wavelength"><span class="viewcode-link">[source]</span></a></dt> |
---|
667 | <dd><p>Set wavelength</p> |
---|
668 | </dd></dl> |
---|
669 | |
---|
670 | <dl class="method"> |
---|
671 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.set_wavelength_spread"> |
---|
672 | <tt class="descname">set_wavelength_spread</tt><big>(</big><em>wavelength_spread</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.set_wavelength_spread"><span class="viewcode-link">[source]</span></a></dt> |
---|
673 | <dd><p>Set wavelength spread</p> |
---|
674 | </dd></dl> |
---|
675 | |
---|
676 | <dl class="method"> |
---|
677 | <dt id="sas.calculator.resolution_calculator.ResolutionCalculator.setup_tof"> |
---|
678 | <tt class="descname">setup_tof</tt><big>(</big><em>wavelength</em>, <em>wavelength_spread</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/resolution_calculator.html#ResolutionCalculator.setup_tof"><span class="viewcode-link">[source]</span></a></dt> |
---|
679 | <dd><p>Setup all parameters in instrument</p> |
---|
680 | <p>: param ind: index of lambda, etc</p> |
---|
681 | </dd></dl> |
---|
682 | |
---|
683 | </dd></dl> |
---|
684 | |
---|
685 | </div> |
---|
686 | <div class="section" id="module-sas.calculator.sas_gen"> |
---|
687 | <span id="sas-calculator-sas-gen-module"></span><h2>sas.calculator.sas_gen module</h2> |
---|
688 | <p>SAS generic computation and sld file readers</p> |
---|
689 | <dl class="class"> |
---|
690 | <dt id="sas.calculator.sas_gen.GenSAS"> |
---|
691 | <em class="property">class </em><tt class="descclassname">sas.calculator.sas_gen.</tt><tt class="descname">GenSAS</tt><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#GenSAS"><span class="viewcode-link">[source]</span></a></dt> |
---|
692 | <dd><p>Bases: <a class="reference internal" href="sas.models.html#sas.models.BaseComponent.BaseComponent" title="sas.models.BaseComponent.BaseComponent"><tt class="xref py py-class docutils literal"><span class="pre">sas.models.BaseComponent.BaseComponent</span></tt></a></p> |
---|
693 | <p>Generic SAS computation Model based on sld (n & m) arrays</p> |
---|
694 | <dl class="method"> |
---|
695 | <dt id="sas.calculator.sas_gen.GenSAS.evalDistribution"> |
---|
696 | <tt class="descname">evalDistribution</tt><big>(</big><em>qdist</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#GenSAS.evalDistribution"><span class="viewcode-link">[source]</span></a></dt> |
---|
697 | <dd><p>Evaluate a distribution of q-values. |
---|
698 | * For 1D, a numpy array is expected as input: evalDistribution(q) where q is a numpy array. |
---|
699 | * For 2D, a list of numpy arrays are expected: [qx_prime,qy_prime], where 1D arrays. |
---|
700 | :param qdist: ndarray of scalar q-values or list [qx,qy] where qx,qy are 1D ndarrays</p> |
---|
701 | </dd></dl> |
---|
702 | |
---|
703 | <dl class="method"> |
---|
704 | <dt id="sas.calculator.sas_gen.GenSAS.getProfile"> |
---|
705 | <tt class="descname">getProfile</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#GenSAS.getProfile"><span class="viewcode-link">[source]</span></a></dt> |
---|
706 | <dd><p>Get SLD profile</p> |
---|
707 | <p>: return: sld_data</p> |
---|
708 | </dd></dl> |
---|
709 | |
---|
710 | <dl class="method"> |
---|
711 | <dt id="sas.calculator.sas_gen.GenSAS.run"> |
---|
712 | <tt class="descname">run</tt><big>(</big><em>x=0.0</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#GenSAS.run"><span class="viewcode-link">[source]</span></a></dt> |
---|
713 | <dd><p>Evaluate the model |
---|
714 | :param x: simple value |
---|
715 | :return: (I value)</p> |
---|
716 | </dd></dl> |
---|
717 | |
---|
718 | <dl class="method"> |
---|
719 | <dt id="sas.calculator.sas_gen.GenSAS.runXY"> |
---|
720 | <tt class="descname">runXY</tt><big>(</big><em>x=0.0</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#GenSAS.runXY"><span class="viewcode-link">[source]</span></a></dt> |
---|
721 | <dd><p>Evaluate the model |
---|
722 | :param x: simple value |
---|
723 | :return: I value |
---|
724 | :Use this runXY() for the computation</p> |
---|
725 | </dd></dl> |
---|
726 | |
---|
727 | <dl class="method"> |
---|
728 | <dt id="sas.calculator.sas_gen.GenSAS.set_is_avg"> |
---|
729 | <tt class="descname">set_is_avg</tt><big>(</big><em>is_avg=False</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#GenSAS.set_is_avg"><span class="viewcode-link">[source]</span></a></dt> |
---|
730 | <dd><p>Sets is_avg: [bool]</p> |
---|
731 | </dd></dl> |
---|
732 | |
---|
733 | <dl class="method"> |
---|
734 | <dt id="sas.calculator.sas_gen.GenSAS.set_pixel_volumes"> |
---|
735 | <tt class="descname">set_pixel_volumes</tt><big>(</big><em>volume</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#GenSAS.set_pixel_volumes"><span class="viewcode-link">[source]</span></a></dt> |
---|
736 | <dd><p>Set the volume of a pixel in (A^3) unit |
---|
737 | :Param volume: pixel volume [float]</p> |
---|
738 | </dd></dl> |
---|
739 | |
---|
740 | <dl class="method"> |
---|
741 | <dt id="sas.calculator.sas_gen.GenSAS.set_sld_data"> |
---|
742 | <tt class="descname">set_sld_data</tt><big>(</big><em>sld_data=None</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#GenSAS.set_sld_data"><span class="viewcode-link">[source]</span></a></dt> |
---|
743 | <dd><p>Sets sld_data</p> |
---|
744 | </dd></dl> |
---|
745 | |
---|
746 | </dd></dl> |
---|
747 | |
---|
748 | <dl class="class"> |
---|
749 | <dt id="sas.calculator.sas_gen.MagSLD"> |
---|
750 | <em class="property">class </em><tt class="descclassname">sas.calculator.sas_gen.</tt><tt class="descname">MagSLD</tt><big>(</big><em>pos_x</em>, <em>pos_y</em>, <em>pos_z</em>, <em>sld_n=None</em>, <em>sld_mx=None</em>, <em>sld_my=None</em>, <em>sld_mz=None</em>, <em>vol_pix=None</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#MagSLD"><span class="viewcode-link">[source]</span></a></dt> |
---|
751 | <dd><p>Magnetic SLD.</p> |
---|
752 | <dl class="method"> |
---|
753 | <dt id="sas.calculator.sas_gen.MagSLD.get_sld_m"> |
---|
754 | <tt class="descname">get_sld_m</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#MagSLD.get_sld_m"><span class="viewcode-link">[source]</span></a></dt> |
---|
755 | <dd><p>Returns (sldm, sld_theta, sld_phi)</p> |
---|
756 | </dd></dl> |
---|
757 | |
---|
758 | <dl class="method"> |
---|
759 | <dt id="sas.calculator.sas_gen.MagSLD.get_sld_mxyz"> |
---|
760 | <tt class="descname">get_sld_mxyz</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#MagSLD.get_sld_mxyz"><span class="viewcode-link">[source]</span></a></dt> |
---|
761 | <dd><p>Returns (sld_mx, sldmy, sld_mz)</p> |
---|
762 | </dd></dl> |
---|
763 | |
---|
764 | <dl class="method"> |
---|
765 | <dt id="sas.calculator.sas_gen.MagSLD.get_sldn"> |
---|
766 | <tt class="descname">get_sldn</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#MagSLD.get_sldn"><span class="viewcode-link">[source]</span></a></dt> |
---|
767 | <dd><p>Returns nuclear sld</p> |
---|
768 | </dd></dl> |
---|
769 | |
---|
770 | <dl class="attribute"> |
---|
771 | <dt id="sas.calculator.sas_gen.MagSLD.pos_x"> |
---|
772 | <tt class="descname">pos_x</tt><em class="property"> = None</em></dt> |
---|
773 | <dd></dd></dl> |
---|
774 | |
---|
775 | <dl class="attribute"> |
---|
776 | <dt id="sas.calculator.sas_gen.MagSLD.pos_y"> |
---|
777 | <tt class="descname">pos_y</tt><em class="property"> = None</em></dt> |
---|
778 | <dd></dd></dl> |
---|
779 | |
---|
780 | <dl class="attribute"> |
---|
781 | <dt id="sas.calculator.sas_gen.MagSLD.pos_z"> |
---|
782 | <tt class="descname">pos_z</tt><em class="property"> = None</em></dt> |
---|
783 | <dd></dd></dl> |
---|
784 | |
---|
785 | <dl class="method"> |
---|
786 | <dt id="sas.calculator.sas_gen.MagSLD.set_conect_lines"> |
---|
787 | <tt class="descname">set_conect_lines</tt><big>(</big><em>line_x</em>, <em>line_y</em>, <em>line_z</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#MagSLD.set_conect_lines"><span class="viewcode-link">[source]</span></a></dt> |
---|
788 | <dd><p>Set bonding line data if taken from pdb</p> |
---|
789 | </dd></dl> |
---|
790 | |
---|
791 | <dl class="method"> |
---|
792 | <dt id="sas.calculator.sas_gen.MagSLD.set_nodes"> |
---|
793 | <tt class="descname">set_nodes</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#MagSLD.set_nodes"><span class="viewcode-link">[source]</span></a></dt> |
---|
794 | <dd><p>Set xnodes, ynodes, and znodes</p> |
---|
795 | </dd></dl> |
---|
796 | |
---|
797 | <dl class="method"> |
---|
798 | <dt id="sas.calculator.sas_gen.MagSLD.set_pix_type"> |
---|
799 | <tt class="descname">set_pix_type</tt><big>(</big><em>pix_type</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#MagSLD.set_pix_type"><span class="viewcode-link">[source]</span></a></dt> |
---|
800 | <dd><p>Set pixel type |
---|
801 | :Param pix_type: string, ‘pixel’ or ‘atom’</p> |
---|
802 | </dd></dl> |
---|
803 | |
---|
804 | <dl class="method"> |
---|
805 | <dt id="sas.calculator.sas_gen.MagSLD.set_pixel_symbols"> |
---|
806 | <tt class="descname">set_pixel_symbols</tt><big>(</big><em>symbol='pixel'</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#MagSLD.set_pixel_symbols"><span class="viewcode-link">[source]</span></a></dt> |
---|
807 | <dd><p>Set pixel |
---|
808 | :Params pixel: str; pixel or atomic symbol, or array of strings</p> |
---|
809 | </dd></dl> |
---|
810 | |
---|
811 | <dl class="method"> |
---|
812 | <dt id="sas.calculator.sas_gen.MagSLD.set_pixel_volumes"> |
---|
813 | <tt class="descname">set_pixel_volumes</tt><big>(</big><em>vol</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#MagSLD.set_pixel_volumes"><span class="viewcode-link">[source]</span></a></dt> |
---|
814 | <dd><p>Set pixel volumes |
---|
815 | :Params pixel: str; pixel or atomic symbol, or array of strings</p> |
---|
816 | </dd></dl> |
---|
817 | |
---|
818 | <dl class="method"> |
---|
819 | <dt id="sas.calculator.sas_gen.MagSLD.set_sldms"> |
---|
820 | <tt class="descname">set_sldms</tt><big>(</big><em>sld_mx</em>, <em>sld_my</em>, <em>sld_mz</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#MagSLD.set_sldms"><span class="viewcode-link">[source]</span></a></dt> |
---|
821 | <dd><p>Sets (|m|, m_theta, m_phi)</p> |
---|
822 | </dd></dl> |
---|
823 | |
---|
824 | <dl class="method"> |
---|
825 | <dt id="sas.calculator.sas_gen.MagSLD.set_sldn"> |
---|
826 | <tt class="descname">set_sldn</tt><big>(</big><em>sld_n</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#MagSLD.set_sldn"><span class="viewcode-link">[source]</span></a></dt> |
---|
827 | <dd><p>Sets neutron SLD</p> |
---|
828 | </dd></dl> |
---|
829 | |
---|
830 | <dl class="method"> |
---|
831 | <dt id="sas.calculator.sas_gen.MagSLD.set_stepsize"> |
---|
832 | <tt class="descname">set_stepsize</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#MagSLD.set_stepsize"><span class="viewcode-link">[source]</span></a></dt> |
---|
833 | <dd><p>Set xtepsize, ystepsize, and zstepsize</p> |
---|
834 | </dd></dl> |
---|
835 | |
---|
836 | <dl class="attribute"> |
---|
837 | <dt id="sas.calculator.sas_gen.MagSLD.sld_mx"> |
---|
838 | <tt class="descname">sld_mx</tt><em class="property"> = None</em></dt> |
---|
839 | <dd></dd></dl> |
---|
840 | |
---|
841 | <dl class="attribute"> |
---|
842 | <dt id="sas.calculator.sas_gen.MagSLD.sld_my"> |
---|
843 | <tt class="descname">sld_my</tt><em class="property"> = None</em></dt> |
---|
844 | <dd></dd></dl> |
---|
845 | |
---|
846 | <dl class="attribute"> |
---|
847 | <dt id="sas.calculator.sas_gen.MagSLD.sld_mz"> |
---|
848 | <tt class="descname">sld_mz</tt><em class="property"> = None</em></dt> |
---|
849 | <dd></dd></dl> |
---|
850 | |
---|
851 | <dl class="attribute"> |
---|
852 | <dt id="sas.calculator.sas_gen.MagSLD.sld_n"> |
---|
853 | <tt class="descname">sld_n</tt><em class="property"> = None</em></dt> |
---|
854 | <dd></dd></dl> |
---|
855 | |
---|
856 | </dd></dl> |
---|
857 | |
---|
858 | <dl class="class"> |
---|
859 | <dt id="sas.calculator.sas_gen.OMF2SLD"> |
---|
860 | <em class="property">class </em><tt class="descclassname">sas.calculator.sas_gen.</tt><tt class="descname">OMF2SLD</tt><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#OMF2SLD"><span class="viewcode-link">[source]</span></a></dt> |
---|
861 | <dd><p>Convert OMFData to MAgData</p> |
---|
862 | <dl class="method"> |
---|
863 | <dt id="sas.calculator.sas_gen.OMF2SLD.get_magsld"> |
---|
864 | <tt class="descname">get_magsld</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#OMF2SLD.get_magsld"><span class="viewcode-link">[source]</span></a></dt> |
---|
865 | <dd><p>return MagSLD</p> |
---|
866 | </dd></dl> |
---|
867 | |
---|
868 | <dl class="method"> |
---|
869 | <dt id="sas.calculator.sas_gen.OMF2SLD.get_omfdata"> |
---|
870 | <tt class="descname">get_omfdata</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#OMF2SLD.get_omfdata"><span class="viewcode-link">[source]</span></a></dt> |
---|
871 | <dd><p>Return all data</p> |
---|
872 | </dd></dl> |
---|
873 | |
---|
874 | <dl class="method"> |
---|
875 | <dt id="sas.calculator.sas_gen.OMF2SLD.get_output"> |
---|
876 | <tt class="descname">get_output</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#OMF2SLD.get_output"><span class="viewcode-link">[source]</span></a></dt> |
---|
877 | <dd><p>Return output</p> |
---|
878 | </dd></dl> |
---|
879 | |
---|
880 | <dl class="method"> |
---|
881 | <dt id="sas.calculator.sas_gen.OMF2SLD.remove_null_points"> |
---|
882 | <tt class="descname">remove_null_points</tt><big>(</big><em>remove=False</em>, <em>recenter=False</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#OMF2SLD.remove_null_points"><span class="viewcode-link">[source]</span></a></dt> |
---|
883 | <dd><p>Removes any mx, my, and mz = 0 points</p> |
---|
884 | </dd></dl> |
---|
885 | |
---|
886 | <dl class="method"> |
---|
887 | <dt id="sas.calculator.sas_gen.OMF2SLD.set_data"> |
---|
888 | <tt class="descname">set_data</tt><big>(</big><em>omfdata</em>, <em>shape='rectangular'</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#OMF2SLD.set_data"><span class="viewcode-link">[source]</span></a></dt> |
---|
889 | <dd><p>Set all data</p> |
---|
890 | </dd></dl> |
---|
891 | |
---|
892 | </dd></dl> |
---|
893 | |
---|
894 | <dl class="class"> |
---|
895 | <dt id="sas.calculator.sas_gen.OMFData"> |
---|
896 | <em class="property">class </em><tt class="descclassname">sas.calculator.sas_gen.</tt><tt class="descname">OMFData</tt><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#OMFData"><span class="viewcode-link">[source]</span></a></dt> |
---|
897 | <dd><p>OMF Data.</p> |
---|
898 | <dl class="method"> |
---|
899 | <dt id="sas.calculator.sas_gen.OMFData.set_m"> |
---|
900 | <tt class="descname">set_m</tt><big>(</big><em>mx</em>, <em>my</em>, <em>mz</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#OMFData.set_m"><span class="viewcode-link">[source]</span></a></dt> |
---|
901 | <dd><p>Set the Mx, My, Mz values</p> |
---|
902 | </dd></dl> |
---|
903 | |
---|
904 | </dd></dl> |
---|
905 | |
---|
906 | <dl class="class"> |
---|
907 | <dt id="sas.calculator.sas_gen.OMFReader"> |
---|
908 | <em class="property">class </em><tt class="descclassname">sas.calculator.sas_gen.</tt><tt class="descname">OMFReader</tt><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#OMFReader"><span class="viewcode-link">[source]</span></a></dt> |
---|
909 | <dd><p>Class to load omf/ascii files (3 columns w/header).</p> |
---|
910 | <dl class="attribute"> |
---|
911 | <dt id="sas.calculator.sas_gen.OMFReader.ext"> |
---|
912 | <tt class="descname">ext</tt><em class="property"> = ['.omf', '.OMF']</em></dt> |
---|
913 | <dd></dd></dl> |
---|
914 | |
---|
915 | <dl class="method"> |
---|
916 | <dt id="sas.calculator.sas_gen.OMFReader.read"> |
---|
917 | <tt class="descname">read</tt><big>(</big><em>path</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#OMFReader.read"><span class="viewcode-link">[source]</span></a></dt> |
---|
918 | <dd><p>Load data file |
---|
919 | :param path: file path |
---|
920 | :return: x, y, z, sld_n, sld_mx, sld_my, sld_mz</p> |
---|
921 | </dd></dl> |
---|
922 | |
---|
923 | <dl class="attribute"> |
---|
924 | <dt id="sas.calculator.sas_gen.OMFReader.type"> |
---|
925 | <tt class="descname">type</tt><em class="property"> = ['OMF files (*.OMF, *.omf)|*.omf']</em></dt> |
---|
926 | <dd></dd></dl> |
---|
927 | |
---|
928 | <dl class="attribute"> |
---|
929 | <dt id="sas.calculator.sas_gen.OMFReader.type_name"> |
---|
930 | <tt class="descname">type_name</tt><em class="property"> = 'OMF ASCII'</em></dt> |
---|
931 | <dd></dd></dl> |
---|
932 | |
---|
933 | </dd></dl> |
---|
934 | |
---|
935 | <dl class="class"> |
---|
936 | <dt id="sas.calculator.sas_gen.PDBReader"> |
---|
937 | <em class="property">class </em><tt class="descclassname">sas.calculator.sas_gen.</tt><tt class="descname">PDBReader</tt><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#PDBReader"><span class="viewcode-link">[source]</span></a></dt> |
---|
938 | <dd><p>PDB reader class: limited for reading the lines starting with ‘ATOM’</p> |
---|
939 | <dl class="attribute"> |
---|
940 | <dt id="sas.calculator.sas_gen.PDBReader.ext"> |
---|
941 | <tt class="descname">ext</tt><em class="property"> = ['.pdb', '.PDB']</em></dt> |
---|
942 | <dd></dd></dl> |
---|
943 | |
---|
944 | <dl class="method"> |
---|
945 | <dt id="sas.calculator.sas_gen.PDBReader.read"> |
---|
946 | <tt class="descname">read</tt><big>(</big><em>path</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#PDBReader.read"><span class="viewcode-link">[source]</span></a></dt> |
---|
947 | <dd><p>Load data file</p> |
---|
948 | <table class="docutils field-list" frame="void" rules="none"> |
---|
949 | <col class="field-name" /> |
---|
950 | <col class="field-body" /> |
---|
951 | <tbody valign="top"> |
---|
952 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>path</strong> – file path</td> |
---|
953 | </tr> |
---|
954 | <tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body">MagSLD</td> |
---|
955 | </tr> |
---|
956 | <tr class="field-odd field"><th class="field-name" colspan="2">Raises RuntimeError:</th></tr> |
---|
957 | <tr class="field-odd field"><td> </td><td class="field-body">when the file can’t be opened</td> |
---|
958 | </tr> |
---|
959 | </tbody> |
---|
960 | </table> |
---|
961 | </dd></dl> |
---|
962 | |
---|
963 | <dl class="attribute"> |
---|
964 | <dt id="sas.calculator.sas_gen.PDBReader.type"> |
---|
965 | <tt class="descname">type</tt><em class="property"> = ['pdb files (*.PDB, *.pdb)|*.pdb']</em></dt> |
---|
966 | <dd></dd></dl> |
---|
967 | |
---|
968 | <dl class="attribute"> |
---|
969 | <dt id="sas.calculator.sas_gen.PDBReader.type_name"> |
---|
970 | <tt class="descname">type_name</tt><em class="property"> = 'PDB'</em></dt> |
---|
971 | <dd></dd></dl> |
---|
972 | |
---|
973 | <dl class="method"> |
---|
974 | <dt id="sas.calculator.sas_gen.PDBReader.write"> |
---|
975 | <tt class="descname">write</tt><big>(</big><em>path</em>, <em>data</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#PDBReader.write"><span class="viewcode-link">[source]</span></a></dt> |
---|
976 | <dd><p>Write</p> |
---|
977 | </dd></dl> |
---|
978 | |
---|
979 | </dd></dl> |
---|
980 | |
---|
981 | <dl class="class"> |
---|
982 | <dt id="sas.calculator.sas_gen.SLDReader"> |
---|
983 | <em class="property">class </em><tt class="descclassname">sas.calculator.sas_gen.</tt><tt class="descname">SLDReader</tt><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#SLDReader"><span class="viewcode-link">[source]</span></a></dt> |
---|
984 | <dd><p>Class to load ascii files (7 columns).</p> |
---|
985 | <dl class="attribute"> |
---|
986 | <dt id="sas.calculator.sas_gen.SLDReader.ext"> |
---|
987 | <tt class="descname">ext</tt><em class="property"> = ['.sld', '.SLD', '.txt', '.TXT', '.*']</em></dt> |
---|
988 | <dd></dd></dl> |
---|
989 | |
---|
990 | <dl class="method"> |
---|
991 | <dt id="sas.calculator.sas_gen.SLDReader.read"> |
---|
992 | <tt class="descname">read</tt><big>(</big><em>path</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#SLDReader.read"><span class="viewcode-link">[source]</span></a></dt> |
---|
993 | <dd><p>Load data file</p> |
---|
994 | <table class="docutils field-list" frame="void" rules="none"> |
---|
995 | <col class="field-name" /> |
---|
996 | <col class="field-body" /> |
---|
997 | <tbody valign="top"> |
---|
998 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><p class="first"><strong>path</strong> – file path</p> |
---|
999 | </td> |
---|
1000 | </tr> |
---|
1001 | <tr class="field-even field"><th class="field-name">Return MagSLD:</th><td class="field-body"><p class="first">x, y, z, sld_n, sld_mx, sld_my, sld_mz</p> |
---|
1002 | </td> |
---|
1003 | </tr> |
---|
1004 | <tr class="field-odd field"><th class="field-name">Raises:</th><td class="field-body"><ul class="first last simple"> |
---|
1005 | <li><strong>RuntimeError</strong> – when the file can’t be opened</li> |
---|
1006 | <li><strong>ValueError</strong> – when the length of the data vectors are inconsistent</li> |
---|
1007 | </ul> |
---|
1008 | </td> |
---|
1009 | </tr> |
---|
1010 | </tbody> |
---|
1011 | </table> |
---|
1012 | </dd></dl> |
---|
1013 | |
---|
1014 | <dl class="attribute"> |
---|
1015 | <dt id="sas.calculator.sas_gen.SLDReader.type"> |
---|
1016 | <tt class="descname">type</tt><em class="property"> = ['sld files (*.SLD, *.sld)|*.sld', 'txt files (*.TXT, *.txt)|*.txt', 'all files (*.*)|*.*']</em></dt> |
---|
1017 | <dd></dd></dl> |
---|
1018 | |
---|
1019 | <dl class="attribute"> |
---|
1020 | <dt id="sas.calculator.sas_gen.SLDReader.type_name"> |
---|
1021 | <tt class="descname">type_name</tt><em class="property"> = 'SLD ASCII'</em></dt> |
---|
1022 | <dd></dd></dl> |
---|
1023 | |
---|
1024 | <dl class="method"> |
---|
1025 | <dt id="sas.calculator.sas_gen.SLDReader.write"> |
---|
1026 | <tt class="descname">write</tt><big>(</big><em>path</em>, <em>data</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#SLDReader.write"><span class="viewcode-link">[source]</span></a></dt> |
---|
1027 | <dd><p>Write sld file</p> |
---|
1028 | <table class="docutils field-list" frame="void" rules="none"> |
---|
1029 | <col class="field-name" /> |
---|
1030 | <col class="field-body" /> |
---|
1031 | <tbody valign="top"> |
---|
1032 | <tr class="field-odd field"><th class="field-name">Param path:</th><td class="field-body">file path</td> |
---|
1033 | </tr> |
---|
1034 | <tr class="field-even field"><th class="field-name">Param data:</th><td class="field-body">MagSLD data object</td> |
---|
1035 | </tr> |
---|
1036 | </tbody> |
---|
1037 | </table> |
---|
1038 | </dd></dl> |
---|
1039 | |
---|
1040 | </dd></dl> |
---|
1041 | |
---|
1042 | <dl class="function"> |
---|
1043 | <dt id="sas.calculator.sas_gen.mag2sld"> |
---|
1044 | <tt class="descclassname">sas.calculator.sas_gen.</tt><tt class="descname">mag2sld</tt><big>(</big><em>mag</em>, <em>v_unit=None</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#mag2sld"><span class="viewcode-link">[source]</span></a></dt> |
---|
1045 | <dd><p>Convert magnetization to magnatic SLD |
---|
1046 | sldm = Dm * mag where Dm = gamma * classical elec. radius/(2*Bohr magneton) |
---|
1047 | Dm ~ 2.853E-12 [A^(-2)] ==> Shouldn’t be 2.90636E-12 [A^(-2)]???</p> |
---|
1048 | </dd></dl> |
---|
1049 | |
---|
1050 | <dl class="function"> |
---|
1051 | <dt id="sas.calculator.sas_gen.test"> |
---|
1052 | <tt class="descclassname">sas.calculator.sas_gen.</tt><tt class="descname">test</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#test"><span class="viewcode-link">[source]</span></a></dt> |
---|
1053 | <dd></dd></dl> |
---|
1054 | |
---|
1055 | <dl class="function"> |
---|
1056 | <dt id="sas.calculator.sas_gen.test_load"> |
---|
1057 | <tt class="descclassname">sas.calculator.sas_gen.</tt><tt class="descname">test_load</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#test_load"><span class="viewcode-link">[source]</span></a></dt> |
---|
1058 | <dd></dd></dl> |
---|
1059 | |
---|
1060 | <dl class="function"> |
---|
1061 | <dt id="sas.calculator.sas_gen.transform_center"> |
---|
1062 | <tt class="descclassname">sas.calculator.sas_gen.</tt><tt class="descname">transform_center</tt><big>(</big><em>pos_x</em>, <em>pos_y</em>, <em>pos_z</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/sas_gen.html#transform_center"><span class="viewcode-link">[source]</span></a></dt> |
---|
1063 | <dd><p>re-center</p> |
---|
1064 | <table class="docutils field-list" frame="void" rules="none"> |
---|
1065 | <col class="field-name" /> |
---|
1066 | <col class="field-body" /> |
---|
1067 | <tbody valign="top"> |
---|
1068 | <tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">posx, posy, posz [arrays]</td> |
---|
1069 | </tr> |
---|
1070 | </tbody> |
---|
1071 | </table> |
---|
1072 | </dd></dl> |
---|
1073 | |
---|
1074 | </div> |
---|
1075 | <div class="section" id="module-sas.calculator.slit_length_calculator"> |
---|
1076 | <span id="sas-calculator-slit-length-calculator-module"></span><h2>sas.calculator.slit_length_calculator module</h2> |
---|
1077 | <p>This module is a small tool to allow user to quickly |
---|
1078 | determine the slit length value of data.</p> |
---|
1079 | <dl class="class"> |
---|
1080 | <dt id="sas.calculator.slit_length_calculator.SlitlengthCalculator"> |
---|
1081 | <em class="property">class </em><tt class="descclassname">sas.calculator.slit_length_calculator.</tt><tt class="descname">SlitlengthCalculator</tt><a class="reference internal" href="../../_modules/sas/calculator/slit_length_calculator.html#SlitlengthCalculator"><span class="viewcode-link">[source]</span></a></dt> |
---|
1082 | <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">object</span></tt></p> |
---|
1083 | <p>compute slit length from SAXSess beam profile (1st col. Q , 2nd col. I , |
---|
1084 | and 3rd col. dI.: don’t need the 3rd)</p> |
---|
1085 | <dl class="method"> |
---|
1086 | <dt id="sas.calculator.slit_length_calculator.SlitlengthCalculator.calculate_slit_length"> |
---|
1087 | <tt class="descname">calculate_slit_length</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/slit_length_calculator.html#SlitlengthCalculator.calculate_slit_length"><span class="viewcode-link">[source]</span></a></dt> |
---|
1088 | <dd><p>Calculate slit length.</p> |
---|
1089 | <table class="docutils field-list" frame="void" rules="none"> |
---|
1090 | <col class="field-name" /> |
---|
1091 | <col class="field-body" /> |
---|
1092 | <tbody valign="top"> |
---|
1093 | <tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">the slit length calculated value.</td> |
---|
1094 | </tr> |
---|
1095 | </tbody> |
---|
1096 | </table> |
---|
1097 | </dd></dl> |
---|
1098 | |
---|
1099 | <dl class="method"> |
---|
1100 | <dt id="sas.calculator.slit_length_calculator.SlitlengthCalculator.get_slit_length_unit"> |
---|
1101 | <tt class="descname">get_slit_length_unit</tt><big>(</big><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/slit_length_calculator.html#SlitlengthCalculator.get_slit_length_unit"><span class="viewcode-link">[source]</span></a></dt> |
---|
1102 | <dd><table class="docutils field-list" frame="void" rules="none"> |
---|
1103 | <col class="field-name" /> |
---|
1104 | <col class="field-body" /> |
---|
1105 | <tbody valign="top"> |
---|
1106 | <tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">the slit length unit.</td> |
---|
1107 | </tr> |
---|
1108 | </tbody> |
---|
1109 | </table> |
---|
1110 | </dd></dl> |
---|
1111 | |
---|
1112 | <dl class="method"> |
---|
1113 | <dt id="sas.calculator.slit_length_calculator.SlitlengthCalculator.set_data"> |
---|
1114 | <tt class="descname">set_data</tt><big>(</big><em>x=None</em>, <em>y=None</em><big>)</big><a class="reference internal" href="../../_modules/sas/calculator/slit_length_calculator.html#SlitlengthCalculator.set_data"><span class="viewcode-link">[source]</span></a></dt> |
---|
1115 | <dd><blockquote> |
---|
1116 | <div>Receive two vector x, y and prepare the slit calculator for |
---|
1117 | computation.</div></blockquote> |
---|
1118 | <table class="docutils field-list" frame="void" rules="none"> |
---|
1119 | <col class="field-name" /> |
---|
1120 | <col class="field-body" /> |
---|
1121 | <tbody valign="top"> |
---|
1122 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> |
---|
1123 | <li><strong>x</strong> – array</li> |
---|
1124 | <li><strong>y</strong> – array</li> |
---|
1125 | </ul> |
---|
1126 | </td> |
---|
1127 | </tr> |
---|
1128 | </tbody> |
---|
1129 | </table> |
---|
1130 | </dd></dl> |
---|
1131 | |
---|
1132 | </dd></dl> |
---|
1133 | |
---|
1134 | </div> |
---|
1135 | <div class="section" id="module-sas.calculator"> |
---|
1136 | <span id="module-contents"></span><h2>Module contents</h2> |
---|
1137 | </div> |
---|
1138 | </div> |
---|
1139 | |
---|
1140 | |
---|
1141 | </div> |
---|
1142 | </div> |
---|
1143 | </div> |
---|
1144 | <div class="sphinxsidebar"> |
---|
1145 | <div class="sphinxsidebarwrapper"> |
---|
1146 | <h3><a href="../../index.html">Table Of Contents</a></h3> |
---|
1147 | <ul> |
---|
1148 | <li><a class="reference internal" href="#">sas.calculator package</a><ul> |
---|
1149 | <li><a class="reference internal" href="#submodules">Submodules</a></li> |
---|
1150 | <li><a class="reference internal" href="#module-sas.calculator.instrument">sas.calculator.instrument module</a></li> |
---|
1151 | <li><a class="reference internal" href="#module-sas.calculator.kiessig_calculator">sas.calculator.kiessig_calculator module</a></li> |
---|
1152 | <li><a class="reference internal" href="#module-sas.calculator.resolution_calculator">sas.calculator.resolution_calculator module</a></li> |
---|
1153 | <li><a class="reference internal" href="#module-sas.calculator.sas_gen">sas.calculator.sas_gen module</a></li> |
---|
1154 | <li><a class="reference internal" href="#module-sas.calculator.slit_length_calculator">sas.calculator.slit_length_calculator module</a></li> |
---|
1155 | <li><a class="reference internal" href="#module-sas.calculator">Module contents</a></li> |
---|
1156 | </ul> |
---|
1157 | </li> |
---|
1158 | </ul> |
---|
1159 | |
---|
1160 | <h4>Previous topic</h4> |
---|
1161 | <p class="topless"><a href="sas.html" |
---|
1162 | title="previous chapter">sas package</a></p> |
---|
1163 | <h4>Next topic</h4> |
---|
1164 | <p class="topless"><a href="sas.data_util.html" |
---|
1165 | title="next chapter">sas.data_util package</a></p> |
---|
1166 | <h3>This Page</h3> |
---|
1167 | <ul class="this-page-menu"> |
---|
1168 | <li><a href="../../_sources/dev/api/sas.calculator.txt" |
---|
1169 | rel="nofollow">Show Source</a></li> |
---|
1170 | </ul> |
---|
1171 | <div id="searchbox" style="display: none"> |
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