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51  <h1>Source code for sas.models.TriaxialEllipsoidModel</h1><div class="highlight"><pre>
52<span class="c">##############################################################################</span>
53<span class="c"># This software was developed by the University of Tennessee as part of the</span>
54<span class="c"># Distributed Data Analysis of Neutron Scattering Experiments (DANSE)</span>
55<span class="c"># project funded by the US National Science Foundation.</span>
56<span class="c">#</span>
57<span class="c"># If you use DANSE applications to do scientific research that leads to</span>
58<span class="c"># publication, we ask that you acknowledge the use of the software with the</span>
59<span class="c"># following sentence:</span>
60<span class="c">#</span>
61<span class="c"># This work benefited from DANSE software developed under NSF award DMR-0520547</span>
62<span class="c">#</span>
63<span class="c"># Copyright 2008-2011, University of Tennessee</span>
64<span class="c">##############################################################################</span>
65
66<span class="sd">&quot;&quot;&quot; </span>
67<span class="sd">Provide functionality for a C extension model</span>
68
69<span class="sd">.. WARNING::</span>
70
71<span class="sd">   THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY</span>
72<span class="sd">   DO NOT MODIFY THIS FILE, MODIFY</span>
73<span class="sd">   src/sas/models/include/triaxial_ellipsoid.h</span>
74<span class="sd">   AND RE-RUN THE GENERATOR SCRIPT</span>
75<span class="sd">&quot;&quot;&quot;</span>
76
77<span class="kn">from</span> <span class="nn">sas.models.BaseComponent</span> <span class="kn">import</span> <span class="n">BaseComponent</span>
78<span class="kn">from</span> <span class="nn">sas.models.sas_extension.c_models</span> <span class="kn">import</span> <span class="n">CTriaxialEllipsoidModel</span>
79
80<div class="viewcode-block" id="create_TriaxialEllipsoidModel"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.TriaxialEllipsoidModel.create_TriaxialEllipsoidModel">[docs]</a><span class="k">def</span> <span class="nf">create_TriaxialEllipsoidModel</span><span class="p">():</span>
81    <span class="sd">&quot;&quot;&quot;</span>
82<span class="sd">       Create a model instance</span>
83<span class="sd">    &quot;&quot;&quot;</span>
84    <span class="n">obj</span> <span class="o">=</span> <span class="n">TriaxialEllipsoidModel</span><span class="p">()</span>
85    <span class="c"># CTriaxialEllipsoidModel.__init__(obj) is called by</span>
86    <span class="c"># the TriaxialEllipsoidModel constructor</span>
87    <span class="k">return</span> <span class="n">obj</span>
88</div>
89<div class="viewcode-block" id="TriaxialEllipsoidModel"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.TriaxialEllipsoidModel.TriaxialEllipsoidModel">[docs]</a><span class="k">class</span> <span class="nc">TriaxialEllipsoidModel</span><span class="p">(</span><span class="n">CTriaxialEllipsoidModel</span><span class="p">,</span> <span class="n">BaseComponent</span><span class="p">):</span>
90    <span class="sd">&quot;&quot;&quot; </span>
91<span class="sd">    Class that evaluates a TriaxialEllipsoidModel model. </span>
92<span class="sd">    This file was auto-generated from src/sas/models/include/triaxial_ellipsoid.h.</span>
93<span class="sd">    Refer to that file and the structure it contains</span>
94<span class="sd">    for details of the model.</span>
95<span class="sd">    </span>
96<span class="sd">    List of default parameters:</span>
97
98<span class="sd">    * scale           = 1.0 </span>
99<span class="sd">    * semi_axisA      = 35.0 [A]</span>
100<span class="sd">    * semi_axisB      = 100.0 [A]</span>
101<span class="sd">    * semi_axisC      = 400.0 [A]</span>
102<span class="sd">    * sldEll          = 1e-06 [1/A^(2)]</span>
103<span class="sd">    * sldSolv         = 6.3e-06 [1/A^(2)]</span>
104<span class="sd">    * background      = 0.0 [1/cm]</span>
105<span class="sd">    * axis_theta      = 57.325 [deg]</span>
106<span class="sd">    * axis_phi        = 57.325 [deg]</span>
107<span class="sd">    * axis_psi        = 0.0 [deg]</span>
108
109<span class="sd">    &quot;&quot;&quot;</span>
110       
111    <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">multfactor</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span>
112        <span class="sd">&quot;&quot;&quot; Initialization &quot;&quot;&quot;</span>
113        <span class="bp">self</span><span class="o">.</span><span class="n">__dict__</span> <span class="o">=</span> <span class="p">{}</span>
114       
115        <span class="c"># Initialize BaseComponent first, then sphere</span>
116        <span class="n">BaseComponent</span><span class="o">.</span><span class="n">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
117        <span class="c">#apply(CTriaxialEllipsoidModel.__init__, (self,)) </span>
118
119        <span class="n">CTriaxialEllipsoidModel</span><span class="o">.</span><span class="n">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
120        <span class="bp">self</span><span class="o">.</span><span class="n">is_multifunc</span> <span class="o">=</span> <span class="bp">False</span>
121                       
122        <span class="c">## Name of the model</span>
123        <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s">&quot;TriaxialEllipsoidModel&quot;</span>
124        <span class="c">## Model description</span>
125        <span class="bp">self</span><span class="o">.</span><span class="n">description</span> <span class="o">=</span> <span class="s">&quot;&quot;&quot;</span>
126<span class="s">        Note: During fitting ensure that the inequality A&lt;B&lt;C is not</span>
127<span class="s">                violated. Otherwise the calculation will</span>
128<span class="s">                not be correct.</span>
129<span class="s">        &quot;&quot;&quot;</span>
130       
131        <span class="c">## Parameter details [units, min, max]</span>
132        <span class="bp">self</span><span class="o">.</span><span class="n">details</span> <span class="o">=</span> <span class="p">{}</span>
133        <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">&#39;scale&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">&#39;&#39;</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span>
134        <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">&#39;semi_axisA&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">&#39;[A]&#39;</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span>
135        <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">&#39;semi_axisB&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">&#39;[A]&#39;</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span>
136        <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">&#39;semi_axisC&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">&#39;[A]&#39;</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span>
137        <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">&#39;sldEll&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">&#39;[1/A^(2)]&#39;</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span>
138        <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">&#39;sldSolv&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">&#39;[1/A^(2)]&#39;</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span>
139        <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">&#39;background&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">&#39;[1/cm]&#39;</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span>
140        <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">&#39;axis_theta&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">&#39;[deg]&#39;</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span>
141        <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">&#39;axis_phi&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">&#39;[deg]&#39;</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span>
142        <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">&#39;axis_psi&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">&#39;[deg]&#39;</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span>
143
144        <span class="c">## fittable parameters</span>
145        <span class="bp">self</span><span class="o">.</span><span class="n">fixed</span> <span class="o">=</span> <span class="p">[</span><span class="s">&#39;axis_psi.width&#39;</span><span class="p">,</span>
146                      <span class="s">&#39;axis_phi.width&#39;</span><span class="p">,</span>
147                      <span class="s">&#39;axis_theta.width&#39;</span><span class="p">,</span>
148                      <span class="s">&#39;semi_axisA.width&#39;</span><span class="p">,</span>
149                      <span class="s">&#39;semi_axisB.width&#39;</span><span class="p">,</span>
150                      <span class="s">&#39;semi_axisC.width&#39;</span><span class="p">]</span>
151       
152        <span class="c">## non-fittable parameters</span>
153        <span class="bp">self</span><span class="o">.</span><span class="n">non_fittable</span> <span class="o">=</span> <span class="p">[]</span>
154       
155        <span class="c">## parameters with orientation</span>
156        <span class="bp">self</span><span class="o">.</span><span class="n">orientation_params</span> <span class="o">=</span> <span class="p">[</span><span class="s">&#39;axis_psi&#39;</span><span class="p">,</span>
157                                   <span class="s">&#39;axis_phi&#39;</span><span class="p">,</span>
158                                   <span class="s">&#39;axis_theta&#39;</span><span class="p">,</span>
159                                   <span class="s">&#39;axis_psi.width&#39;</span><span class="p">,</span>
160                                   <span class="s">&#39;axis_phi.width&#39;</span><span class="p">,</span>
161                                   <span class="s">&#39;axis_theta.width&#39;</span><span class="p">]</span>
162
163        <span class="c">## parameters with magnetism</span>
164        <span class="bp">self</span><span class="o">.</span><span class="n">magnetic_params</span> <span class="o">=</span> <span class="p">[]</span>
165
166        <span class="bp">self</span><span class="o">.</span><span class="n">category</span> <span class="o">=</span> <span class="bp">None</span>
167        <span class="bp">self</span><span class="o">.</span><span class="n">multiplicity_info</span> <span class="o">=</span> <span class="bp">None</span>
168       
169    <span class="k">def</span> <span class="nf">__setstate__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">state</span><span class="p">):</span>
170        <span class="sd">&quot;&quot;&quot;</span>
171<span class="sd">        restore the state of a model from pickle</span>
172<span class="sd">        &quot;&quot;&quot;</span>
173        <span class="bp">self</span><span class="o">.</span><span class="n">__dict__</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">params</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dispersion</span> <span class="o">=</span> <span class="n">state</span>
174       
175    <span class="k">def</span> <span class="nf">__reduce_ex__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">proto</span><span class="p">):</span>
176        <span class="sd">&quot;&quot;&quot;</span>
177<span class="sd">        Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of </span>
178<span class="sd">        c model.</span>
179<span class="sd">        &quot;&quot;&quot;</span>
180        <span class="n">state</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">__dict__</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">params</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dispersion</span><span class="p">)</span>
181        <span class="k">return</span> <span class="p">(</span><span class="n">create_TriaxialEllipsoidModel</span><span class="p">,</span> <span class="nb">tuple</span><span class="p">(),</span> <span class="n">state</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">)</span>
182       
183<div class="viewcode-block" id="TriaxialEllipsoidModel.clone"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.TriaxialEllipsoidModel.TriaxialEllipsoidModel.clone">[docs]</a>    <span class="k">def</span> <span class="nf">clone</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
184        <span class="sd">&quot;&quot;&quot; Return a identical copy of self &quot;&quot;&quot;</span>
185        <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_clone</span><span class="p">(</span><span class="n">TriaxialEllipsoidModel</span><span class="p">())</span>   
186        </div>
187<div class="viewcode-block" id="TriaxialEllipsoidModel.run"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.TriaxialEllipsoidModel.TriaxialEllipsoidModel.run">[docs]</a>    <span class="k">def</span> <span class="nf">run</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span>
188        <span class="sd">&quot;&quot;&quot; </span>
189<span class="sd">        Evaluate the model</span>
190<span class="sd">        </span>
191<span class="sd">        :param x: input q, or [q,phi]</span>
192<span class="sd">        </span>
193<span class="sd">        :return: scattering function P(q)</span>
194<span class="sd">        </span>
195<span class="sd">        &quot;&quot;&quot;</span>
196        <span class="k">return</span> <span class="n">CTriaxialEllipsoidModel</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
197   </div>
198<div class="viewcode-block" id="TriaxialEllipsoidModel.runXY"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.TriaxialEllipsoidModel.TriaxialEllipsoidModel.runXY">[docs]</a>    <span class="k">def</span> <span class="nf">runXY</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span>
199        <span class="sd">&quot;&quot;&quot; </span>
200<span class="sd">        Evaluate the model in cartesian coordinates</span>
201<span class="sd">        </span>
202<span class="sd">        :param x: input q, or [qx, qy]</span>
203<span class="sd">        </span>
204<span class="sd">        :return: scattering function P(q)</span>
205<span class="sd">        </span>
206<span class="sd">        &quot;&quot;&quot;</span>
207        <span class="k">return</span> <span class="n">CTriaxialEllipsoidModel</span><span class="o">.</span><span class="n">runXY</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
208        </div>
209<div class="viewcode-block" id="TriaxialEllipsoidModel.evalDistribution"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.TriaxialEllipsoidModel.TriaxialEllipsoidModel.evalDistribution">[docs]</a>    <span class="k">def</span> <span class="nf">evalDistribution</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">):</span>
210        <span class="sd">&quot;&quot;&quot; </span>
211<span class="sd">        Evaluate the model in cartesian coordinates</span>
212<span class="sd">        </span>
213<span class="sd">        :param x: input q[], or [qx[], qy[]]</span>
214<span class="sd">        </span>
215<span class="sd">        :return: scattering function P(q[])</span>
216<span class="sd">        </span>
217<span class="sd">        &quot;&quot;&quot;</span>
218        <span class="k">return</span> <span class="n">CTriaxialEllipsoidModel</span><span class="o">.</span><span class="n">evalDistribution</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span>
219        </div>
220<div class="viewcode-block" id="TriaxialEllipsoidModel.calculate_ER"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.TriaxialEllipsoidModel.TriaxialEllipsoidModel.calculate_ER">[docs]</a>    <span class="k">def</span> <span class="nf">calculate_ER</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
221        <span class="sd">&quot;&quot;&quot; </span>
222<span class="sd">        Calculate the effective radius for P(q)*S(q)</span>
223<span class="sd">        </span>
224<span class="sd">        :return: the value of the effective radius</span>
225<span class="sd">        </span>
226<span class="sd">        &quot;&quot;&quot;</span>       
227        <span class="k">return</span> <span class="n">CTriaxialEllipsoidModel</span><span class="o">.</span><span class="n">calculate_ER</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
228        </div>
229<div class="viewcode-block" id="TriaxialEllipsoidModel.calculate_VR"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.TriaxialEllipsoidModel.TriaxialEllipsoidModel.calculate_VR">[docs]</a>    <span class="k">def</span> <span class="nf">calculate_VR</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
230        <span class="sd">&quot;&quot;&quot; </span>
231<span class="sd">        Calculate the volf ratio for P(q)*S(q)</span>
232<span class="sd">        </span>
233<span class="sd">        :return: the value of the volf ratio</span>
234<span class="sd">        </span>
235<span class="sd">        &quot;&quot;&quot;</span>       
236        <span class="k">return</span> <span class="n">CTriaxialEllipsoidModel</span><span class="o">.</span><span class="n">calculate_VR</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span>
237              </div>
238<div class="viewcode-block" id="TriaxialEllipsoidModel.set_dispersion"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.TriaxialEllipsoidModel.TriaxialEllipsoidModel.set_dispersion">[docs]</a>    <span class="k">def</span> <span class="nf">set_dispersion</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">parameter</span><span class="p">,</span> <span class="n">dispersion</span><span class="p">):</span>
239        <span class="sd">&quot;&quot;&quot;</span>
240<span class="sd">        Set the dispersion object for a model parameter</span>
241<span class="sd">        </span>
242<span class="sd">        :param parameter: name of the parameter [string]</span>
243<span class="sd">        :param dispersion: dispersion object of type DispersionModel</span>
244<span class="sd">        </span>
245<span class="sd">        &quot;&quot;&quot;</span>
246        <span class="k">return</span> <span class="n">CTriaxialEllipsoidModel</span><span class="o">.</span><span class="n">set_dispersion</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span>
247               <span class="n">parameter</span><span class="p">,</span> <span class="n">dispersion</span><span class="o">.</span><span class="n">cdisp</span><span class="p">)</span>
248       
249   
250<span class="c"># End of file</span>
251</pre></div></div></div>
252
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