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| 51 | <h1>Source code for sas.models.CoreFourShellModel</h1><div class="highlight"><pre> |
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| 52 | <span class="c">##############################################################################</span> |
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| 53 | <span class="c"># This software was developed by the University of Tennessee as part of the</span> |
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| 54 | <span class="c"># Distributed Data Analysis of Neutron Scattering Experiments (DANSE)</span> |
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| 55 | <span class="c"># project funded by the US National Science Foundation.</span> |
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| 56 | <span class="c">#</span> |
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| 57 | <span class="c"># If you use DANSE applications to do scientific research that leads to</span> |
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| 58 | <span class="c"># publication, we ask that you acknowledge the use of the software with the</span> |
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| 59 | <span class="c"># following sentence:</span> |
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| 60 | <span class="c">#</span> |
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| 61 | <span class="c"># This work benefited from DANSE software developed under NSF award DMR-0520547</span> |
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| 62 | <span class="c">#</span> |
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| 63 | <span class="c"># Copyright 2008-2011, University of Tennessee</span> |
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| 64 | <span class="c">##############################################################################</span> |
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| 65 | |
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| 66 | <span class="sd">""" </span> |
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| 67 | <span class="sd">Provide functionality for a C extension model</span> |
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| 68 | |
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| 69 | <span class="sd">.. WARNING::</span> |
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| 70 | |
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| 71 | <span class="sd"> THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY</span> |
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| 72 | <span class="sd"> DO NOT MODIFY THIS FILE, MODIFY</span> |
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| 73 | <span class="sd"> src/sas/models/include/corefourshell.h</span> |
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| 74 | <span class="sd"> AND RE-RUN THE GENERATOR SCRIPT</span> |
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| 75 | <span class="sd">"""</span> |
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| 76 | |
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| 77 | <span class="kn">from</span> <span class="nn">sas.models.BaseComponent</span> <span class="kn">import</span> <span class="n">BaseComponent</span> |
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| 78 | <span class="kn">from</span> <span class="nn">sas.models.sas_extension.c_models</span> <span class="kn">import</span> <span class="n">CCoreFourShellModel</span> |
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| 79 | |
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| 80 | <div class="viewcode-block" id="create_CoreFourShellModel"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.create_CoreFourShellModel">[docs]</a><span class="k">def</span> <span class="nf">create_CoreFourShellModel</span><span class="p">():</span> |
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| 81 | <span class="sd">"""</span> |
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| 82 | <span class="sd"> Create a model instance</span> |
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| 83 | <span class="sd"> """</span> |
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| 84 | <span class="n">obj</span> <span class="o">=</span> <span class="n">CoreFourShellModel</span><span class="p">()</span> |
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| 85 | <span class="c"># CCoreFourShellModel.__init__(obj) is called by</span> |
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| 86 | <span class="c"># the CoreFourShellModel constructor</span> |
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| 87 | <span class="k">return</span> <span class="n">obj</span> |
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| 88 | </div> |
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| 89 | <div class="viewcode-block" id="CoreFourShellModel"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel">[docs]</a><span class="k">class</span> <span class="nc">CoreFourShellModel</span><span class="p">(</span><span class="n">CCoreFourShellModel</span><span class="p">,</span> <span class="n">BaseComponent</span><span class="p">):</span> |
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| 90 | <span class="sd">""" </span> |
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| 91 | <span class="sd"> Class that evaluates a CoreFourShellModel model. </span> |
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| 92 | <span class="sd"> This file was auto-generated from src/sas/models/include/corefourshell.h.</span> |
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| 93 | <span class="sd"> Refer to that file and the structure it contains</span> |
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| 94 | <span class="sd"> for details of the model.</span> |
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| 95 | <span class="sd"> </span> |
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| 96 | <span class="sd"> List of default parameters:</span> |
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| 97 | |
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| 98 | <span class="sd"> * scale = 1.0 </span> |
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| 99 | <span class="sd"> * rad_core0 = 60.0 [A]</span> |
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| 100 | <span class="sd"> * sld_core0 = 6.4e-06 [1/A^(2)]</span> |
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| 101 | <span class="sd"> * thick_shell1 = 10.0 [A]</span> |
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| 102 | <span class="sd"> * sld_shell1 = 1e-06 [1/A^(2)]</span> |
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| 103 | <span class="sd"> * thick_shell2 = 10.0 [A]</span> |
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| 104 | <span class="sd"> * sld_shell2 = 2e-06 [1/A^(2)]</span> |
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| 105 | <span class="sd"> * thick_shell3 = 10.0 [A]</span> |
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| 106 | <span class="sd"> * sld_shell3 = 3e-06 [1/A^(2)]</span> |
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| 107 | <span class="sd"> * thick_shell4 = 10.0 [A]</span> |
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| 108 | <span class="sd"> * sld_shell4 = 4e-06 [1/A^(2)]</span> |
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| 109 | <span class="sd"> * sld_solv = 6.4e-06 [1/A^(2)]</span> |
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| 110 | <span class="sd"> * background = 0.001 [1/cm]</span> |
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| 111 | <span class="sd"> * M0_sld_shell1 = 0.0 [1/A^(2)]</span> |
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| 112 | <span class="sd"> * M_theta_shell1 = 0.0 [deg]</span> |
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| 113 | <span class="sd"> * M_phi_shell1 = 0.0 [deg]</span> |
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| 114 | <span class="sd"> * M0_sld_shell2 = 0.0 [1/A^(2)]</span> |
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| 115 | <span class="sd"> * M_theta_shell2 = 0.0 [deg]</span> |
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| 116 | <span class="sd"> * M_phi_shell2 = 0.0 [deg]</span> |
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| 117 | <span class="sd"> * M0_sld_shell3 = 0.0 [1/A^(2)]</span> |
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| 118 | <span class="sd"> * M_theta_shell3 = 0.0 [deg]</span> |
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| 119 | <span class="sd"> * M_phi_shell3 = 0.0 [deg]</span> |
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| 120 | <span class="sd"> * M0_sld_shell4 = 0.0 [1/A^(2)]</span> |
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| 121 | <span class="sd"> * M_theta_shell4 = 0.0 [deg]</span> |
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| 122 | <span class="sd"> * M_phi_shell4 = 0.0 [deg]</span> |
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| 123 | <span class="sd"> * M0_sld_core0 = 0.0 [1/A^(2)]</span> |
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| 124 | <span class="sd"> * M_theta_core0 = 0.0 [deg]</span> |
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| 125 | <span class="sd"> * M_phi_core0 = 0.0 [deg]</span> |
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| 126 | <span class="sd"> * M0_sld_solv = 0.0 [1/A^(2)]</span> |
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| 127 | <span class="sd"> * M_theta_solv = 0.0 [deg]</span> |
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| 128 | <span class="sd"> * M_phi_solv = 0.0 [deg]</span> |
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| 129 | <span class="sd"> * Up_frac_i = 0.5 [u/(u+d)]</span> |
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| 130 | <span class="sd"> * Up_frac_f = 0.5 [u/(u+d)]</span> |
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| 131 | <span class="sd"> * Up_theta = 0.0 [deg]</span> |
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| 132 | |
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| 133 | <span class="sd"> """</span> |
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| 134 | |
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| 135 | <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">multfactor</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span> |
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| 136 | <span class="sd">""" Initialization """</span> |
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| 137 | <span class="bp">self</span><span class="o">.</span><span class="n">__dict__</span> <span class="o">=</span> <span class="p">{}</span> |
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| 138 | |
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| 139 | <span class="c"># Initialize BaseComponent first, then sphere</span> |
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| 140 | <span class="n">BaseComponent</span><span class="o">.</span><span class="n">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> |
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| 141 | <span class="c">#apply(CCoreFourShellModel.__init__, (self,)) </span> |
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| 142 | |
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| 143 | <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> |
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| 144 | <span class="bp">self</span><span class="o">.</span><span class="n">is_multifunc</span> <span class="o">=</span> <span class="bp">False</span> |
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| 145 | |
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| 146 | <span class="c">## Name of the model</span> |
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| 147 | <span class="bp">self</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s">"CoreFourShellModel"</span> |
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| 148 | <span class="c">## Model description</span> |
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| 149 | <span class="bp">self</span><span class="o">.</span><span class="n">description</span> <span class="o">=</span> <span class="s">"""</span> |
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| 150 | <span class="s"> Calculates the scattering intensity from a core-4 shell structure.</span> |
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| 151 | <span class="s"> scale = scale factor * volume fraction</span> |
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| 152 | <span class="s"> rad_core0: the radius of the core</span> |
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| 153 | <span class="s"> sld_core0: the SLD of the core</span> |
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| 154 | <span class="s"> thick_shelli: the thickness of the i'th shell from the core</span> |
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| 155 | <span class="s"> sld_shelli: the SLD of the i'th shell from the core</span> |
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| 156 | <span class="s"> sld_solv: the SLD of the solvent</span> |
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| 157 | <span class="s"> background: incoherent background</span> |
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| 158 | <span class="s"> """</span> |
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| 159 | |
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| 160 | <span class="c">## Parameter details [units, min, max]</span> |
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| 161 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span> <span class="o">=</span> <span class="p">{}</span> |
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| 162 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'scale'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">''</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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| 163 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'rad_core0'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[A]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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| 164 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'sld_core0'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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| 165 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'thick_shell1'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[A]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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| 166 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'sld_shell1'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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| 167 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'thick_shell2'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[A]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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| 168 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'sld_shell2'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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| 169 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'thick_shell3'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[A]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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| 170 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'sld_shell3'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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| 171 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'thick_shell4'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[A]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 172 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'sld_shell4'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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| 173 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'sld_solv'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
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| 174 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'background'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/cm]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 175 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M0_sld_shell1'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 176 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_theta_shell1'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 177 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_phi_shell1'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 178 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M0_sld_shell2'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 179 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_theta_shell2'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 180 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_phi_shell2'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 181 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M0_sld_shell3'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 182 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_theta_shell3'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 183 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_phi_shell3'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 184 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M0_sld_shell4'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 185 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_theta_shell4'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 186 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_phi_shell4'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 187 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M0_sld_core0'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 188 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_theta_core0'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 189 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_phi_core0'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 190 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M0_sld_solv'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[1/A^(2)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 191 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_theta_solv'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 192 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'M_phi_solv'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 193 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'Up_frac_i'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[u/(u+d)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 194 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'Up_frac_f'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[u/(u+d)]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 195 | <span class="bp">self</span><span class="o">.</span><span class="n">details</span><span class="p">[</span><span class="s">'Up_theta'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s">'[deg]'</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">]</span> |
|---|
| 196 | |
|---|
| 197 | <span class="c">## fittable parameters</span> |
|---|
| 198 | <span class="bp">self</span><span class="o">.</span><span class="n">fixed</span> <span class="o">=</span> <span class="p">[</span><span class="s">'thick_shell4.width'</span><span class="p">,</span> |
|---|
| 199 | <span class="s">'thick_shell1.width'</span><span class="p">,</span> |
|---|
| 200 | <span class="s">'thick_shell2.width'</span><span class="p">,</span> |
|---|
| 201 | <span class="s">'thick_shell3.width'</span><span class="p">,</span> |
|---|
| 202 | <span class="s">'rad_core0.width'</span><span class="p">]</span> |
|---|
| 203 | |
|---|
| 204 | <span class="c">## non-fittable parameters</span> |
|---|
| 205 | <span class="bp">self</span><span class="o">.</span><span class="n">non_fittable</span> <span class="o">=</span> <span class="p">[]</span> |
|---|
| 206 | |
|---|
| 207 | <span class="c">## parameters with orientation</span> |
|---|
| 208 | <span class="bp">self</span><span class="o">.</span><span class="n">orientation_params</span> <span class="o">=</span> <span class="p">[</span><span class="s">'M0_sld_shell4'</span><span class="p">,</span> |
|---|
| 209 | <span class="s">'M_theta_shell4'</span><span class="p">,</span> |
|---|
| 210 | <span class="s">'M_phi_shell4'</span><span class="p">,</span> |
|---|
| 211 | <span class="s">'M0_sld_shell3'</span><span class="p">,</span> |
|---|
| 212 | <span class="s">'M_theta_shell3'</span><span class="p">,</span> |
|---|
| 213 | <span class="s">'M_phi_shell3'</span><span class="p">,</span> |
|---|
| 214 | <span class="s">'M0_sld_shell2'</span><span class="p">,</span> |
|---|
| 215 | <span class="s">'M_theta_shell2'</span><span class="p">,</span> |
|---|
| 216 | <span class="s">'M_phi_shell2'</span><span class="p">,</span> |
|---|
| 217 | <span class="s">'M0_sld_shell1'</span><span class="p">,</span> |
|---|
| 218 | <span class="s">'M_theta_shell1'</span><span class="p">,</span> |
|---|
| 219 | <span class="s">'M_phi_shell1'</span><span class="p">,</span> |
|---|
| 220 | <span class="s">'M0_sld_core0'</span><span class="p">,</span> |
|---|
| 221 | <span class="s">'M_theta_core0'</span><span class="p">,</span> |
|---|
| 222 | <span class="s">'M_phi_core0'</span><span class="p">,</span> |
|---|
| 223 | <span class="s">'M0_sld_solv'</span><span class="p">,</span> |
|---|
| 224 | <span class="s">'M_theta_solv'</span><span class="p">,</span> |
|---|
| 225 | <span class="s">'M_phi_solv'</span><span class="p">,</span> |
|---|
| 226 | <span class="s">'Up_frac_i'</span><span class="p">,</span> |
|---|
| 227 | <span class="s">'Up_frac_f'</span><span class="p">,</span> |
|---|
| 228 | <span class="s">'Up_theta'</span><span class="p">]</span> |
|---|
| 229 | |
|---|
| 230 | <span class="c">## parameters with magnetism</span> |
|---|
| 231 | <span class="bp">self</span><span class="o">.</span><span class="n">magnetic_params</span> <span class="o">=</span> <span class="p">[</span><span class="s">'M0_sld_shell4'</span><span class="p">,</span> <span class="s">'M_theta_shell4'</span><span class="p">,</span> <span class="s">'M_phi_shell4'</span><span class="p">,</span> <span class="s">'M0_sld_shell3'</span><span class="p">,</span> <span class="s">'M_theta_shell3'</span><span class="p">,</span> <span class="s">'M_phi_shell3'</span><span class="p">,</span> <span class="s">'M0_sld_shell2'</span><span class="p">,</span> <span class="s">'M_theta_shell2'</span><span class="p">,</span> <span class="s">'M_phi_shell2'</span><span class="p">,</span> <span class="s">'M0_sld_shell1'</span><span class="p">,</span> <span class="s">'M_theta_shell1'</span><span class="p">,</span> <span class="s">'M_phi_shell1'</span><span class="p">,</span> <span class="s">'M0_sld_core0'</span><span class="p">,</span> <span class="s">'M_theta_core0'</span><span class="p">,</span> <span class="s">'M_phi_core0'</span><span class="p">,</span> <span class="s">'M0_sld_solv'</span><span class="p">,</span> <span class="s">'M_theta_solv'</span><span class="p">,</span> <span class="s">'M_phi_solv'</span><span class="p">,</span> <span class="s">'Up_frac_i'</span><span class="p">,</span> <span class="s">'Up_frac_f'</span><span class="p">,</span> <span class="s">'Up_theta'</span><span class="p">]</span> |
|---|
| 232 | |
|---|
| 233 | <span class="bp">self</span><span class="o">.</span><span class="n">category</span> <span class="o">=</span> <span class="bp">None</span> |
|---|
| 234 | <span class="bp">self</span><span class="o">.</span><span class="n">multiplicity_info</span> <span class="o">=</span> <span class="bp">None</span> |
|---|
| 235 | |
|---|
| 236 | <span class="k">def</span> <span class="nf">__setstate__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">state</span><span class="p">):</span> |
|---|
| 237 | <span class="sd">"""</span> |
|---|
| 238 | <span class="sd"> restore the state of a model from pickle</span> |
|---|
| 239 | <span class="sd"> """</span> |
|---|
| 240 | <span class="bp">self</span><span class="o">.</span><span class="n">__dict__</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">params</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dispersion</span> <span class="o">=</span> <span class="n">state</span> |
|---|
| 241 | |
|---|
| 242 | <span class="k">def</span> <span class="nf">__reduce_ex__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">proto</span><span class="p">):</span> |
|---|
| 243 | <span class="sd">"""</span> |
|---|
| 244 | <span class="sd"> Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of </span> |
|---|
| 245 | <span class="sd"> c model.</span> |
|---|
| 246 | <span class="sd"> """</span> |
|---|
| 247 | <span class="n">state</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">__dict__</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">params</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dispersion</span><span class="p">)</span> |
|---|
| 248 | <span class="k">return</span> <span class="p">(</span><span class="n">create_CoreFourShellModel</span><span class="p">,</span> <span class="nb">tuple</span><span class="p">(),</span> <span class="n">state</span><span class="p">,</span> <span class="bp">None</span><span class="p">,</span> <span class="bp">None</span><span class="p">)</span> |
|---|
| 249 | |
|---|
| 250 | <div class="viewcode-block" id="CoreFourShellModel.clone"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.clone">[docs]</a> <span class="k">def</span> <span class="nf">clone</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> |
|---|
| 251 | <span class="sd">""" Return a identical copy of self """</span> |
|---|
| 252 | <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_clone</span><span class="p">(</span><span class="n">CoreFourShellModel</span><span class="p">())</span> |
|---|
| 253 | </div> |
|---|
| 254 | <div class="viewcode-block" id="CoreFourShellModel.run"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.run">[docs]</a> <span class="k">def</span> <span class="nf">run</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span> |
|---|
| 255 | <span class="sd">""" </span> |
|---|
| 256 | <span class="sd"> Evaluate the model</span> |
|---|
| 257 | <span class="sd"> </span> |
|---|
| 258 | <span class="sd"> :param x: input q, or [q,phi]</span> |
|---|
| 259 | <span class="sd"> </span> |
|---|
| 260 | <span class="sd"> :return: scattering function P(q)</span> |
|---|
| 261 | <span class="sd"> </span> |
|---|
| 262 | <span class="sd"> """</span> |
|---|
| 263 | <span class="k">return</span> <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span> |
|---|
| 264 | </div> |
|---|
| 265 | <div class="viewcode-block" id="CoreFourShellModel.runXY"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.runXY">[docs]</a> <span class="k">def</span> <span class="nf">runXY</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="o">=</span><span class="mf">0.0</span><span class="p">):</span> |
|---|
| 266 | <span class="sd">""" </span> |
|---|
| 267 | <span class="sd"> Evaluate the model in cartesian coordinates</span> |
|---|
| 268 | <span class="sd"> </span> |
|---|
| 269 | <span class="sd"> :param x: input q, or [qx, qy]</span> |
|---|
| 270 | <span class="sd"> </span> |
|---|
| 271 | <span class="sd"> :return: scattering function P(q)</span> |
|---|
| 272 | <span class="sd"> </span> |
|---|
| 273 | <span class="sd"> """</span> |
|---|
| 274 | <span class="k">return</span> <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">runXY</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span> |
|---|
| 275 | </div> |
|---|
| 276 | <div class="viewcode-block" id="CoreFourShellModel.evalDistribution"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.evalDistribution">[docs]</a> <span class="k">def</span> <span class="nf">evalDistribution</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">):</span> |
|---|
| 277 | <span class="sd">""" </span> |
|---|
| 278 | <span class="sd"> Evaluate the model in cartesian coordinates</span> |
|---|
| 279 | <span class="sd"> </span> |
|---|
| 280 | <span class="sd"> :param x: input q[], or [qx[], qy[]]</span> |
|---|
| 281 | <span class="sd"> </span> |
|---|
| 282 | <span class="sd"> :return: scattering function P(q[])</span> |
|---|
| 283 | <span class="sd"> </span> |
|---|
| 284 | <span class="sd"> """</span> |
|---|
| 285 | <span class="k">return</span> <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">evalDistribution</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">x</span><span class="p">)</span> |
|---|
| 286 | </div> |
|---|
| 287 | <div class="viewcode-block" id="CoreFourShellModel.calculate_ER"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.calculate_ER">[docs]</a> <span class="k">def</span> <span class="nf">calculate_ER</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> |
|---|
| 288 | <span class="sd">""" </span> |
|---|
| 289 | <span class="sd"> Calculate the effective radius for P(q)*S(q)</span> |
|---|
| 290 | <span class="sd"> </span> |
|---|
| 291 | <span class="sd"> :return: the value of the effective radius</span> |
|---|
| 292 | <span class="sd"> </span> |
|---|
| 293 | <span class="sd"> """</span> |
|---|
| 294 | <span class="k">return</span> <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">calculate_ER</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> |
|---|
| 295 | </div> |
|---|
| 296 | <div class="viewcode-block" id="CoreFourShellModel.calculate_VR"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.calculate_VR">[docs]</a> <span class="k">def</span> <span class="nf">calculate_VR</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> |
|---|
| 297 | <span class="sd">""" </span> |
|---|
| 298 | <span class="sd"> Calculate the volf ratio for P(q)*S(q)</span> |
|---|
| 299 | <span class="sd"> </span> |
|---|
| 300 | <span class="sd"> :return: the value of the volf ratio</span> |
|---|
| 301 | <span class="sd"> </span> |
|---|
| 302 | <span class="sd"> """</span> |
|---|
| 303 | <span class="k">return</span> <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">calculate_VR</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> |
|---|
| 304 | </div> |
|---|
| 305 | <div class="viewcode-block" id="CoreFourShellModel.set_dispersion"><a class="viewcode-back" href="../../../dev/api/sas.models.html#sas.models.CoreFourShellModel.CoreFourShellModel.set_dispersion">[docs]</a> <span class="k">def</span> <span class="nf">set_dispersion</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">parameter</span><span class="p">,</span> <span class="n">dispersion</span><span class="p">):</span> |
|---|
| 306 | <span class="sd">"""</span> |
|---|
| 307 | <span class="sd"> Set the dispersion object for a model parameter</span> |
|---|
| 308 | <span class="sd"> </span> |
|---|
| 309 | <span class="sd"> :param parameter: name of the parameter [string]</span> |
|---|
| 310 | <span class="sd"> :param dispersion: dispersion object of type DispersionModel</span> |
|---|
| 311 | <span class="sd"> </span> |
|---|
| 312 | <span class="sd"> """</span> |
|---|
| 313 | <span class="k">return</span> <span class="n">CCoreFourShellModel</span><span class="o">.</span><span class="n">set_dispersion</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> |
|---|
| 314 | <span class="n">parameter</span><span class="p">,</span> <span class="n">dispersion</span><span class="o">.</span><span class="n">cdisp</span><span class="p">)</span> |
|---|
| 315 | |
|---|
| 316 | |
|---|
| 317 | <span class="c"># End of file</span> |
|---|
| 318 | </pre></div></div></div> |
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| 357 | © Copyright 2013, The SasView Project. |
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| 358 | Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3. |
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| 359 | </div> |
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| 360 | </body> |
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| 361 | </html> |
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