"""
    Data manipulations for 2D data sets.
    Using the meta data information, various types of averaging
    are performed in Q-space 
"""

"""
This software was developed by the University of Tennessee as part of the
Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
project funded by the US National Science Foundation. 

See the license text in license.txt

copyright 2008, University of Tennessee
"""
#TODO: copy the meta data from the 2D object to the resulting 1D object

from data_info import plottable_2D, Data1D
import math
import numpy

def get_q(dx, dy, det_dist, wavelength):
    """
        @param dx: x-distance from beam center [mm]
        @param dy: y-distance from beam center [mm]
        @return: q-value at the given position
    """
    # Distance from beam center in the plane of detector
    plane_dist = math.sqrt(dx*dx + dy*dy)
    # Half of the scattering angle
    theta      = 0.5*math.atan(plane_dist/det_dist)
    return (4.0*math.pi/wavelength)*math.sin(theta)

def get_q_compo(dx, dy, det_dist, wavelength,compo=None):
    #This reduces tiny error at very large q.
    #Implementation of this func is not started yet.<--ToDo
    if dy==0:
        if dx>=0:
            angle_xy=0
        else:
            angle_xy=math.pi
    else:
        angle_xy=math.atan(dx/dy)
        
    if compo=="x":
        out=get_q(dx, dy, det_dist, wavelength)*cos(angle_xy)
    elif compo=="y":
        out=get_q(dx, dy, det_dist, wavelength)*sin(angle_xy)
    else:
        out=get_q(dx, dy, det_dist, wavelength)
    return out
    
class _Slab(object):
    """
        Compute average I(Q) for a region of interest
    """
    def __init__(self, x_min=0.0, x_max=0.0, y_min=0.0, y_max=0.0, bin_width=0.001):
        # Minimum Qx value [A-1]
        self.x_min = x_min
        # Maximum Qx value [A-1]
        self.x_max = x_max
        # Minimum Qy value [A-1]
        self.y_min = y_min
        # Maximum Qy value [A-1]
        self.y_max = y_max
        # Bin width (step size) [A-1]
        self.bin_width = bin_width
        # If True, I(|Q|) will be return, otherwise, negative q-values are allowed
        self.fold = False
        
    def __call__(self, data2D): return NotImplemented
        
    def _avg(self, data2D, maj):
        """
             Compute average I(Q_maj) for a region of interest.
             The major axis is defined as the axis of Q_maj.
             The minor axis is the axis that we average over.
             
             @param data2D: Data2D object
             @param maj_min: min value on the major axis
             @return: Data1D object
        """
        if len(data2D.detector) != 1:
            raise RuntimeError, "_Slab._avg: invalid number of detectors: %g" % len(data2D.detector)
        
        pixel_width_x = data2D.detector[0].pixel_size.x
        pixel_width_y = data2D.detector[0].pixel_size.y
        det_dist    = data2D.detector[0].distance
        wavelength  = data2D.source.wavelength
        center_x    = data2D.detector[0].beam_center.x/pixel_width_x
        center_y    = data2D.detector[0].beam_center.y/pixel_width_y
                
        # Build array of Q intervals
        if maj=='x':
            nbins = int(math.ceil((self.x_max-self.x_min)/self.bin_width))
            qbins = self.bin_width*numpy.arange(nbins)+self.x_min
        elif maj=='y':
            nbins = int(math.ceil((self.y_max-self.y_min)/self.bin_width))
            qbins = self.bin_width*numpy.arange(nbins)+self.y_min            
        else:
            raise RuntimeError, "_Slab._avg: unrecognized axis %s" % str(maj)
                                
        x  = numpy.zeros(nbins)
        y  = numpy.zeros(nbins)
        err_y = numpy.zeros(nbins)
        y_counts = numpy.zeros(nbins)
                                                
        for i in range(numpy.size(data2D.data,1)):
            # Min and max x-value for the pixel
            minx = pixel_width_x*(i - center_x)
            maxx = pixel_width_x*(i+1.0 - center_x)
            
            qxmin = get_q(minx, 0.0, det_dist, wavelength)
            qxmax = get_q(maxx, 0.0, det_dist, wavelength)
            
            # Get the count fraction in x for that pixel
            frac_min = get_pixel_fraction_square(self.x_min, qxmin, qxmax)
            frac_max = get_pixel_fraction_square(self.x_max, qxmin, qxmax)
            frac_x = frac_max - frac_min
            
            if frac_x == 0: 
                continue
            
            if maj=='x':
                dx = pixel_width_x*(i+0.5 - center_x)
                q_value = get_q(dx, 0.0, det_dist, wavelength)
                if self.fold==False and dx<0:
                    q_value = -q_value
                i_q = int(math.ceil((q_value-self.x_min)/self.bin_width)) - 1
                
                if i_q<0 or i_q>=nbins:
                    continue
                        
            for j in range(numpy.size(data2D.data,0)):
                # Min and max y-value for the pixel
                miny = pixel_width_y*(j - center_y)
                maxy = pixel_width_y*(j+1.0 - center_y)

                qymin = get_q(0.0, miny, det_dist, wavelength)
                qymax = get_q(0.0, maxy, det_dist, wavelength)
                
                # Get the count fraction in x for that pixel
                frac_min = get_pixel_fraction_square(self.y_min, qymin, qymax)
                frac_max = get_pixel_fraction_square(self.y_max, qymin, qymax)
                frac_y = frac_max - frac_min
                
                frac = frac_x * frac_y
                
                if frac == 0:
                    continue

                if maj=='y':
                    dy = pixel_width_y*(j+0.5 - center_y)
                    q_value = get_q(0.0, dy, det_dist, wavelength)
                    if self.fold==False and dy<0:
                        q_value = -q_value
                    i_q = int(math.ceil((q_value-self.y_min)/self.bin_width)) - 1
                    
                    if i_q<0 or i_q>=nbins:
                        continue
            
                x[i_q]          = q_value
                y[i_q]         += frac * data2D.data[j][i]
                if data2D.err_data == None or data2D.err_data[j][i]==0.0:
                    err_y[i_q] += frac * frac * math.fabs(data2D.data[j][i])
                else:
                    err_y[i_q] += frac * frac * data2D.err_data[j][i] * data2D.err_data[j][i]
                y_counts[i_q]  += frac

        # Average the sums
        for i in range(nbins):
            if y_counts[i]>0:
                err_y[i] = math.sqrt(err_y[i])/y_counts[i]
                y[i]     = y[i]/y_counts[i]
        
        return Data1D(x=x, y=y, dy=err_y)
        
class SlabY(_Slab):
    """
        Compute average I(Qy) for a region of interest
    """
    def __call__(self, data2D):
        """
             Compute average I(Qy) for a region of interest
             
             @param data2D: Data2D object
             @return: Data1D object
        """
        return self._avg(data2D, 'y')
        
class SlabX(_Slab):
    """
        Compute average I(Qx) for a region of interest
    """
    def __call__(self, data2D):
        """
             Compute average I(Qx) for a region of interest
             
             @param data2D: Data2D object
             @return: Data1D object
        """
        return self._avg(data2D, 'x') 
        
class Boxsum(object):
    """
        Perform the sum of counts in a 2D region of interest.
    """
    def __init__(self, x_min=0.0, x_max=0.0, y_min=0.0, y_max=0.0):
        # Minimum Qx value [A-1]
        self.x_min = x_min
        # Maximum Qx value [A-1]
        self.x_max = x_max
        # Minimum Qy value [A-1]
        self.y_min = y_min
        # Maximum Qy value [A-1]
        self.y_max = y_max

    def __call__(self, data2D):
        """
             Perform the sum in the region of interest 
             
             @param data2D: Data2D object
             @return: number of counts, error on number of counts
        """
        y, err_y, y_counts = self._sum(data2D)
        
        # Average the sums
        counts = 0 if y_counts==0 else y
        error  = 0 if y_counts==0 else math.sqrt(err_y)
        
        return counts, error
        
    def _sum(self, data2D):
        """
             Perform the sum in the region of interest 
             @param data2D: Data2D object
             @return: number of counts, error on number of counts, number of entries summed
        """
        if len(data2D.detector) != 1:
            raise RuntimeError, "Circular averaging: invalid number of detectors: %g" % len(data2D.detector)
        
        pixel_width_x = data2D.detector[0].pixel_size.x
        pixel_width_y = data2D.detector[0].pixel_size.y
        det_dist    = data2D.detector[0].distance
        wavelength  = data2D.source.wavelength
        center_x    = data2D.detector[0].beam_center.x/pixel_width_x
        center_y    = data2D.detector[0].beam_center.y/pixel_width_y
                
        y  = 0.0
        err_y = 0.0
        y_counts = 0.0
        sign=1
        for i in range(numpy.size(data2D.data,1)):
            # Min and max x-value for the pixel
            minx = pixel_width_x*(i - center_x)
            maxx = pixel_width_x*(i+1.0 - center_x)
            if minx>=0:
                sign=1
            else:
                sign=-1           
            qxmin = sign*get_q(minx, 0.0, det_dist, wavelength)
            if maxx>=0:
                sign=1
            else:
                sign=-1
            qxmax = sign*get_q(maxx, 0.0, det_dist, wavelength)
            
            # Get the count fraction in x for that pixel
            frac_min = get_pixel_fraction_square(self.x_min, qxmin, qxmax)
            frac_max = get_pixel_fraction_square(self.x_max, qxmin, qxmax)
            frac_x = frac_max - frac_min
            
            for j in range(numpy.size(data2D.data,0)):
                # Min and max y-value for the pixel
                miny = pixel_width_y*(j - center_y)
                maxy = pixel_width_y*(j+1.0 - center_y)
                if miny>=0:
                    sign=1
                else:
                    sign=-1           

                qymin = sign*get_q(0.0, miny, det_dist, wavelength)
                if maxy>=0:
                    sign=1
                else:
                    sign=-1           
                
                qymax = sign*get_q(0.0, maxy, det_dist, wavelength)
                
                # Get the count fraction in x for that pixel
                frac_min = get_pixel_fraction_square(self.y_min, qymin, qymax)
                frac_max = get_pixel_fraction_square(self.y_max, qymin, qymax)
                frac_y = frac_max - frac_min
                
                frac = frac_x * frac_y

                y += frac * data2D.data[j][i]
                if data2D.err_data == None or data2D.err_data[j][i]==0.0:
                    err_y += frac * frac * math.fabs(data2D.data[j][i])
                else:
                    err_y += frac * frac * data2D.err_data[j][i] * data2D.err_data[j][i]
                y_counts += frac
        
        return y, err_y, y_counts
      
class Boxavg(Boxsum):
    """
        Perform the average of counts in a 2D region of interest.
    """
    def __init__(self, x_min=0.0, x_max=0.0, y_min=0.0, y_max=0.0):
        super(Boxavg, self).__init__(x_min=x_min, x_max=x_max, y_min=y_min, y_max=y_max)

    def __call__(self, data2D):
        """
             Perform the sum in the region of interest 
             
             @param data2D: Data2D object
             @return: average counts, error on average counts
        """
        y, err_y, y_counts = self._sum(data2D)
        
        # Average the sums
        counts = 0 if y_counts==0 else y/y_counts
        error  = 0 if y_counts==0 else math.sqrt(err_y)/y_counts
        
        return counts, error
        
def get_pixel_fraction_square(x, xmin, xmax):
    """
         Return the fraction of the length 
         from xmin to x. 
         
             A            B
         +-----------+---------+
         xmin        x         xmax
         
         @param x: x-value
         @param xmin: minimum x for the length considered
         @param xmax: minimum x for the length considered
         @return: (x-xmin)/(xmax-xmin) when xmin < x < xmax
         
    """
    if x<=xmin:
        return 0.0
    if x>xmin and x<xmax:
        return (x-xmin)/(xmax-xmin)
    else:
        return 1.0


class CircularAverage(object):
    """
        Perform circular averaging on 2D data
        
        The data returned is the distribution of counts
        as a function of Q
    """
    def __init__(self, r_min=0.0, r_max=0.0, bin_width=0.001):
        # Minimum radius included in the average [A-1]
        self.r_min = r_min
        # Maximum radius included in the average [A-1]
        self.r_max = r_max
        # Bin width (step size) [A-1]
        self.bin_width = bin_width

    def __call__(self, data2D):
        """
            Perform circular averaging on the data
            
            @param data2D: Data2D object
            @return: Data1D object
        """
        if len(data2D.detector) != 1:
            raise RuntimeError, "Circular averaging: invalid number of detectors: %g" % len(data2D.detector)
        
        pixel_width_x = data2D.detector[0].pixel_size.x
        pixel_width_y = data2D.detector[0].pixel_size.y
        det_dist    = data2D.detector[0].distance
        wavelength  = data2D.source.wavelength
        center_x    = data2D.detector[0].beam_center.x/pixel_width_x
        center_y    = data2D.detector[0].beam_center.y/pixel_width_y
        
        # Find out the maximum Q range
        xwidth = numpy.size(data2D.data,1)*pixel_width_x
        dx_max = xwidth - data2D.detector[0].beam_center.x
        if xwidth-dx_max>dx_max:
            dx_max = xwidth-dx_max
            
        ywidth = numpy.size(data2D.data,0)*pixel_width_y
        dy_max = ywidth - data2D.detector[0].beam_center.y
        if ywidth-dy_max>dy_max:
            dy_max = ywidth-dy_max
        
        qmax = get_q(dx_max, dy_max, det_dist, wavelength)
        
        # Build array of Q intervals
        nbins = int(math.ceil((qmax-self.r_min)/self.bin_width))
        qbins = self.bin_width*numpy.arange(nbins)+self.r_min
        
        x  = numpy.zeros(nbins)
        y  = numpy.zeros(nbins)
        err_y = numpy.zeros(nbins)
        y_counts = numpy.zeros(nbins)
        
        for i in range(numpy.size(data2D.data,1)):
            dx = pixel_width_x*(i+0.5 - center_x)
            
            # Min and max x-value for the pixel
            minx = pixel_width_x*(i - center_x)
            maxx = pixel_width_x*(i+1.0 - center_x)
            
            for j in range(numpy.size(data2D.data,0)):
                dy = pixel_width_y*(j+0.5 - center_y)
            
                q_value = get_q(dx, dy, det_dist, wavelength)
            
                # Min and max y-value for the pixel
                miny = pixel_width_y*(j - center_y)
                maxy = pixel_width_y*(j+1.0 - center_y)
                
                # Calculate the q-value for each corner
                # q_[x min or max][y min or max]
                q_00 = get_q(minx, miny, det_dist, wavelength)
                q_01 = get_q(minx, maxy, det_dist, wavelength)
                q_10 = get_q(maxx, miny, det_dist, wavelength)
                q_11 = get_q(maxx, maxy, det_dist, wavelength)
                
                # Look for intercept between each side of the pixel
                # and the constant-q ring for qmax
                frac_max = get_pixel_fraction(self.r_max, q_00, q_01, q_10, q_11)
                
                # Look for intercept between each side of the pixel
                # and the constant-q ring for qmin
                frac_min = get_pixel_fraction(self.r_min, q_00, q_01, q_10, q_11)
                
                # We are interested in the region between qmin and qmax
                # therefore the fraction of the surface of the pixel
                # that we will use to calculate the number of counts to 
                # include is given by:
                frac = frac_max - frac_min

                i_q = int(math.ceil((q_value-self.r_min)/self.bin_width)) - 1
            
                x[i_q]          = q_value
                y[i_q]         += frac * data2D.data[j][i]
                if data2D.err_data == None or data2D.err_data[j][i]==0.0:
                    err_y[i_q] += frac * frac * math.fabs(data2D.data[j][i])
                else:
                    err_y[i_q] += frac * frac * data2D.err_data[j][i] * data2D.err_data[j][i]
                y_counts[i_q]  += frac
        
        # Average the sums
        for i in range(nbins):
            if y_counts[i]>0:
                err_y[i] = math.sqrt(err_y[i])/y_counts[i]
                y[i]     = y[i]/y_counts[i]
        
        return Data1D(x=x, y=y, dy=err_y)
    

class Ring(object):
    """
        Defines a ring on a 2D data set.
        The ring is defined by r_min, r_max, and
        the position of the center of the ring.
        
        The data returned is the distribution of counts
        around the ring as a function of phi.
        
    """
    
    def __init__(self, r_min=0, r_max=0, center_x=0, center_y=0):
        # Minimum radius
        self.r_min = r_min
        # Maximum radius
        self.r_max = r_max
        # Center of the ring in x
        self.center_x = center_x
        # Center of the ring in y
        self.center_y = center_y
        # Number of angular bins
        self.nbins_phi = 20
        
    def __call__(self, data2D):
        """
            Apply the ring to the data set.
            Returns the angular distribution for a given q range
            
            @param data2D: Data2D object
            @return: Data1D object
        """
        if data2D.__class__.__name__ not in ["Data2D", "plottable_2D"]:
            raise RuntimeError, "Ring averaging only take plottable_2D objects"
        
        data = data2D.data
        qmin = self.r_min
        qmax = self.r_max
        
        if len(data2D.detector) != 1:
            raise RuntimeError, "Ring averaging: invalid number of detectors: %g" % len(data2D.detector)
        pixel_width_x = data2D.detector[0].pixel_size.x
        pixel_width_y = data2D.detector[0].pixel_size.y
        det_dist = data2D.detector[0].distance
        wavelength = data2D.source.wavelength
        #center_x = self.center_x/pixel_width_x
        #center_y = self.center_y/pixel_width_y
        center_x    = data2D.detector[0].beam_center.x/pixel_width_x
        center_y    = data2D.detector[0].beam_center.y/pixel_width_y
        
        
        phi_bins   = numpy.zeros(self.nbins_phi)
        phi_counts = numpy.zeros(self.nbins_phi)
        phi_values = numpy.zeros(self.nbins_phi)
        phi_err    = numpy.zeros(self.nbins_phi)
        
        for i in range(numpy.size(data,1)):
            dx = pixel_width_x*(i+0.5 - center_x)
            
            # Min and max x-value for the pixel
            minx = pixel_width_x*(i - center_x)
            maxx = pixel_width_x*(i+1.0 - center_x)
            
            for j in range(numpy.size(data,0)):
                dy = pixel_width_y*(j+0.5 - center_y)
            
                q_value = get_q(dx, dy, det_dist, wavelength)
            
                # Min and max y-value for the pixel
                miny = pixel_width_y*(j - center_y)
                maxy = pixel_width_y*(j+1.0 - center_y)
                
                # Calculate the q-value for each corner
                # q_[x min or max][y min or max]
                q_00 = get_q(minx, miny, det_dist, wavelength)
                q_01 = get_q(minx, maxy, det_dist, wavelength)
                q_10 = get_q(maxx, miny, det_dist, wavelength)
                q_11 = get_q(maxx, maxy, det_dist, wavelength)
                
                # Look for intercept between each side of the pixel
                # and the constant-q ring for qmax
                frac_max = get_pixel_fraction(qmax, q_00, q_01, q_10, q_11)
                
                # Look for intercept between each side of the pixel
                # and the constant-q ring for qmin
                frac_min = get_pixel_fraction(qmin, q_00, q_01, q_10, q_11)
                
                # We are interested in the region between qmin and qmax
                # therefore the fraction of the surface of the pixel
                # that we will use to calculate the number of counts to 
                # include is given by:
                
                frac = frac_max - frac_min

                i_phi = int(math.ceil(self.nbins_phi*(math.atan2(dy, dx)+math.pi)/(2.0*math.pi))) - 1
            
                phi_bins[i_phi] += frac * data[j][i]
                
                if data2D.err_data == None or data2D.err_data[j][i]==0.0:
                    phi_err[i_phi] += frac * frac * math.fabs(data2D.data[j][i])
                else:
                    phi_err[i_phi] += frac * frac * data2D.err_data[j][i] * data2D.err_data[j][i]
                phi_counts[i_phi] += frac
        
        for i in range(self.nbins_phi):
            phi_bins[i] = phi_bins[i] / phi_counts[i]
            phi_err[i] = math.sqrt(phi_err[i]) / phi_counts[i]
            phi_values[i] = 2.0*math.pi/self.nbins_phi*(1.0*i + 0.5)-math.pi # move the pi back to -pi <-->+pi
            
        return Data1D(x=phi_values, y=phi_bins, dy=phi_err)
    
def get_pixel_fraction(qmax, q_00, q_01, q_10, q_11):
    """
        Returns the fraction of the pixel defined by
        the four corners (q_00, q_01, q_10, q_11) that 
        has q < qmax.
        
                q_01                q_11
        y=1         +--------------+
                    |              |
                    |              |
                    |              |
        y=0         +--------------+
                q_00                q_01
        
                    x=0            x=1
        
    """
    
    # y side for x = minx
    x_0 = get_intercept(qmax, q_00, q_01)
    # y side for x = maxx
    x_1 = get_intercept(qmax, q_10, q_11)
    
    # x side for y = miny
    y_0 = get_intercept(qmax, q_00, q_10)
    # x side for y = maxy
    y_1 = get_intercept(qmax, q_01, q_11)
    
    # surface fraction for a 1x1 pixel
    frac_max = 0
    
    if x_0 and x_1:
        frac_max = (x_0+x_1)/2.0
    
    elif y_0 and y_1:
        frac_max = (y_0+y_1)/2.0
    
    elif x_0 and y_0:
        if q_00 < q_10:
            frac_max = x_0*y_0/2.0
        else:
            frac_max = 1.0-x_0*y_0/2.0
    
    elif x_0 and y_1:
        if q_00 < q_10:
            frac_max = x_0*y_1/2.0
        else:
            frac_max = 1.0-x_0*y_1/2.0
    
    elif x_1 and y_0:
        if q_00 > q_10:
            frac_max = x_1*y_0/2.0
        else:
            frac_max = 1.0-x_1*y_0/2.0
    
    elif x_1 and y_1:
        if q_00 < q_10:
            frac_max = 1.0 - (1.0-x_1)*(1.0-y_1)/2.0
        else:
            frac_max = (1.0-x_1)*(1.0-y_1)/2.0
            
    # If we make it here, there is no intercept between
    # this pixel and the constant-q ring. We only need
    # to know if we have to include it or exclude it.
    elif (q_00+q_01+q_10+q_11)/4.0 < qmax:
        frac_max = 1.0
   
    return frac_max
             
def get_intercept(q, q_0, q_1):
    """
        Returns the fraction of the side at which the
        q-value intercept the pixel, None otherwise.
        The values returned is the fraction ON THE SIDE
        OF THE LOWEST Q.
        
        
        
                A        B    
         +-----------+--------+
         0                    1     <--- pixel size
         
        Q_0 -------- Q ----- Q_1    <--- equivalent Q range
        
        
        if Q_1 > Q_0, A is returned
        if Q_1 < Q_0, B is returned
        
        if Q is outside the range of [Q_0, Q_1], None is returned
         
    """
    if q_1 > q_0:
        if (q > q_0 and q <= q_1):
            return (q-q_0)/(q_1 - q_0)    
    else:
        if (q > q_1 and q <= q_0):
            return (q-q_1)/(q_0 - q_1)
    return None
    
#This class can be removed.
class _Sectorold:
    """
        Defines a sector region on a 2D data set.
        The sector is defined by r_min, r_max, phi_min, phi_max,
        and the position of the center of the ring.         
        Phi is defined between 0 and 2pi
    """
    def __init__(self, r_min, r_max, phi_min, phi_max,nbins=20):
        self.r_min = r_min
        self.r_max = r_max
        self.phi_min = phi_min
        self.phi_max = phi_max
        self.nbins = nbins
        
    def _agv(self, data2D, run='phi'):
        """
            Perform sector averaging.
            
            @param data2D: Data2D object
            @param run:  define the varying parameter ('phi' or 'q')
            @return: Data1D object
        """
        if data2D.__class__.__name__ not in ["Data2D", "plottable_2D"]:
            raise RuntimeError, "Ring averaging only take plottable_2D objects"
                   
        data = data2D.data      
        qmax = self.r_max
        qmin = self.r_min
        
        if len(data2D.detector) != 1:
            raise RuntimeError, "Ring averaging: invalid number of detectors: %g" % len(data2D.detector)
        pixel_width_x = data2D.detector[0].pixel_size.x
        pixel_width_y = data2D.detector[0].pixel_size.y
        det_dist      = data2D.detector[0].distance
        wavelength    = data2D.source.wavelength
        center_x      = data2D.detector[0].beam_center.x/pixel_width_x
        center_y      = data2D.detector[0].beam_center.y/pixel_width_y
        
        y        = numpy.zeros(self.nbins)
        y_counts = numpy.zeros(self.nbins)
        x        = numpy.zeros(self.nbins)
        y_err    = numpy.zeros(self.nbins)
        
        for i in range(numpy.size(data,1)):
            dx = pixel_width_x*(i+0.5 - center_x)
            
            # Min and max x-value for the pixel
            minx = pixel_width_x*(i - center_x)
            maxx = pixel_width_x*(i+1.0 - center_x)
            
            for j in range(numpy.size(data,0)):
                dy = pixel_width_y*(j+0.5 - center_y)
            
                q_value = get_q(dx, dy, det_dist, wavelength)

                # Min and max y-value for the pixel
                miny = pixel_width_y*(j - center_y)
                maxy = pixel_width_y*(j+1.0 - center_y)
                
                # Calculate the q-value for each corner
                # q_[x min or max][y min or max]
                q_00 = get_q(minx, miny, det_dist, wavelength)
                q_01 = get_q(minx, maxy, det_dist, wavelength)
                q_10 = get_q(maxx, miny, det_dist, wavelength)
                q_11 = get_q(maxx, maxy, det_dist, wavelength)
                
                # Look for intercept between each side of the pixel
                # and the constant-q ring for qmax
                frac_max = get_pixel_fraction(qmax, q_00, q_01, q_10, q_11)
                
                # Look for intercept between each side of the pixel
                # and the constant-q ring for qmin
                frac_min = get_pixel_fraction(qmin, q_00, q_01, q_10, q_11)
                
                # We are interested in the region between qmin and qmax
                # therefore the fraction of the surface of the pixel
                # that we will use to calculate the number of counts to 
                # include is given by:
                
                frac = frac_max - frac_min

                # Compute phi and check whether it's within the limits
                phi_value=math.atan2(dy,dx)+math.pi
 #               if phi_value<self.phi_min or phi_value>self.phi_max:                
                if phi_value<self.phi_min or phi_value>self.phi_max:
                    continue
                                                    
                # Check which type of averaging we need
                if run.lower()=='phi': 
                    i_bin = int(math.ceil(self.nbins*(phi_value-self.phi_min)/(self.phi_max-self.phi_min))) - 1
                else:
                    # If we don't need this pixel, skip the rest of the work
                    #TODO: an improvement here would be to compute the average
                    # Q for the pixel from the part that is covered by
                    # the ring defined by q_min/q_max rather than the complete
                    # pixel 
                    if q_value<self.r_min or q_value>self.r_max:
                        continue
                    i_bin = int(math.ceil(self.nbins*(q_value-self.r_min)/(self.r_max-self.r_min))) - 1
            
                try:
                    y[i_bin] += frac * data[j][i]
                except:
                    import sys
                    print sys.exc_value
                    print i_bin, frac
                
                if data2D.err_data == None or data2D.err_data[j][i]==0.0:
                    y_err[i_bin] += frac * frac * math.fabs(data2D.data[j][i])
                else:
                    y_err[i_bin] += frac * frac * data2D.err_data[j][i] * data2D.err_data[j][i]
                y_counts[i_bin] += frac
        
        for i in range(self.nbins):
            y[i] = y[i] / y_counts[i]
            y_err[i] = math.sqrt(y_err[i]) / y_counts[i]
            # Check which type of averaging we need
            if run.lower()=='phi':
                x[i] = (self.phi_max-self.phi_min)/self.nbins*(1.0*i + 0.5)+self.phi_min
            else:
                x[i] = (self.r_max-self.r_min)/self.nbins*(1.0*i + 0.5)+self.r_min
            
        return Data1D(x=x, y=y, dy=y_err)
        
class _Sector:
    """
        Defines a sector region on a 2D data set.
        The sector is defined by r_min, r_max, phi_min, phi_max,
        and the position of the center of the ring 
        where phi_min and phi_max are defined by the right and left lines wrt central line
        and phi_max could be less than phi_min. 
       
        Phi is defined between 0 and 2pi
    """
    def __init__(self, r_min, r_max, phi_min, phi_max,nbins=20):
        self.r_min = r_min
        self.r_max = r_max
        self.phi_min = phi_min
        self.phi_max = phi_max
        self.nbins = nbins
        
    def _agv(self, data2D, run='phi'):
        """
            Perform sector averaging.
            
            @param data2D: Data2D object
            @param run:  define the varying parameter ('phi' or 'q')
            @return: Data1D object
        """
        if data2D.__class__.__name__ not in ["Data2D", "plottable_2D"]:
            raise RuntimeError, "Ring averaging only take plottable_2D objects"
                   
        data = data2D.data      
        qmax = self.r_max
        qmin = self.r_min
        
        if len(data2D.detector) != 1:
            raise RuntimeError, "Ring averaging: invalid number of detectors: %g" % len(data2D.detector)
        pixel_width_x = data2D.detector[0].pixel_size.x
        pixel_width_y = data2D.detector[0].pixel_size.y
        det_dist      = data2D.detector[0].distance
        wavelength    = data2D.source.wavelength
        center_x      = data2D.detector[0].beam_center.x/pixel_width_x
        center_y      = data2D.detector[0].beam_center.y/pixel_width_y
        
        y        = numpy.zeros(self.nbins)
        y_counts = numpy.zeros(self.nbins)
        x        = numpy.zeros(self.nbins)
        y_err    = numpy.zeros(self.nbins)
        
        # This If finds qmax within ROI defined by sector lines
        temp=0 #to find qmax within ROI or phimax and phimin
        temp0=1000000
        temp1=0
        for i in range(numpy.size(data,1)):  
            dx = pixel_width_x*(i+0.5 - center_x)                  
            for j in range(numpy.size(data,0)):
                    
                dy = pixel_width_y*(j+0.5 - center_y)
                q_value = get_q(dx, dy, det_dist, wavelength)
                # Compute phi and check whether it's within the limits
                phi_value=math.atan2(dy,dx)+math.pi
                if self.phi_max>2*math.pi:
                    self.phi_max=self.phi_max-2*math.pi
                if self.phi_min<0:
                    self.phi_max=self.phi_max+2*math.pi
                
                #In case of two ROI (symmetric major and minor regions)(for 'q2')
                if run.lower()=='q2':
                    if ((self.phi_max>=0 and self.phi_max<math.pi)and (self.phi_min>=0 and self.phi_min<math.pi)):
                        temp_max=self.phi_max+math.pi
                        temp_min=self.phi_min+math.pi
                    else:
                        temp_max=self.phi_max
                        temp_min=self.phi_min
                       
                    if ((temp_max>=math.pi and temp_max<2*math.pi)and (temp_min>=math.pi and temp_min<2*math.pi)):
                        if (phi_value<temp_min  or phi_value>temp_max):
                             if (phi_value<temp_min-math.pi  or phi_value>temp_max-math.pi):
                                 continue
                    if (self.phi_max<self.phi_min):
                        tmp_max=self.phi_max+math.pi
                        tmp_min=self.phi_min-math.pi
                    else:
                        tmp_max=self.phi_max
                        tmp_min=self.phi_min
                    if (tmp_min<math.pi and tmp_max>math.pi):
                        if((phi_value>tmp_max and phi_value<tmp_min+math.pi)or (phi_value>tmp_max-math.pi and phi_value<tmp_min)):
                            continue
                #In case of one ROI (major only)(i.e.,for 'q' and 'phi')
                else: 
                    if (self.phi_max>=self.phi_min):
                        if (phi_value<self.phi_min  or phi_value>self.phi_max):
                            continue
                    else:
                        if (phi_value<self.phi_min and phi_value>self.phi_max):
                            continue   
                if q_value<qmin or q_value>qmax:
                        continue                    
                        
                if run.lower()=='phi':
                    if temp1<phi_value:
                        temp1=phi_value
                    if temp0>phi_value:
                        temp0=phi_value   
                                                                                         
                elif temp<q_value:
                    temp=q_value
                    
        if run.lower()=='phi':
            self.phi_max=temp1
            self.phi_min=temp0
        else:
            qmax=temp
                 
        for i in range(numpy.size(data,1)):
            dx = pixel_width_x*(i+0.5 - center_x)
            
            # Min and max x-value for the pixel
            minx = pixel_width_x*(i - center_x)
            maxx = pixel_width_x*(i+1.0 - center_x)
            
            for j in range(numpy.size(data,0)):
                dy = pixel_width_y*(j+0.5 - center_y)
            
                q_value = get_q(dx, dy, det_dist, wavelength)

                # Min and max y-value for the pixel
                miny = pixel_width_y*(j - center_y)
                maxy = pixel_width_y*(j+1.0 - center_y)
                
                # Calculate the q-value for each corner
                # q_[x min or max][y min or max]
                q_00 = get_q(minx, miny, det_dist, wavelength)
                q_01 = get_q(minx, maxy, det_dist, wavelength)
                q_10 = get_q(maxx, miny, det_dist, wavelength)
                q_11 = get_q(maxx, maxy, det_dist, wavelength)
                
                # Compute phi and check whether it's within the limits
                phi_value=math.atan2(dy,dx)+math.pi
                if self.phi_max>2*math.pi:
                    self.phi_max=self.phi_max-2*math.pi
                if self.phi_min<0:
                    self.phi_max=self.phi_max+2*math.pi
                    
                # Look for intercept between each side of the pixel
                # and the constant-q ring for qmax
                frac_max = get_pixel_fraction(qmax, q_00, q_01, q_10, q_11)
                
                # Look for intercept between each side of the pixel
                # and the constant-q ring for qmin
                frac_min = get_pixel_fraction(qmin, q_00, q_01, q_10, q_11)
                
                # We are interested in the region between qmin and qmax
                # therefore the fraction of the surface of the pixel
                # that we will use to calculate the number of counts to 
                # include is given by:
                
                frac = frac_max - frac_min

                #In case of two ROI (symmetric major and minor regions)(for 'q2')
                if run.lower()=='q2':
                    if ((self.phi_max>=0 and self.phi_max<math.pi)and (self.phi_min>=0 and self.phi_min<math.pi)):
                        temp_max=self.phi_max+math.pi
                        temp_min=self.phi_min+math.pi
                    else:
                        temp_max=self.phi_max
                        temp_min=self.phi_min
                       
                    if ((temp_max>=math.pi and temp_max<2*math.pi)and (temp_min>=math.pi and temp_min<2*math.pi)):
                        if (phi_value<temp_min  or phi_value>temp_max):
                            if (phi_value<temp_min-math.pi  or phi_value>temp_max-math.pi):
                                continue
                    if (self.phi_max<self.phi_min):
                        tmp_max=self.phi_max+math.pi
                        tmp_min=self.phi_min-math.pi
                    else:
                        tmp_max=self.phi_max
                        tmp_min=self.phi_min
                    if (tmp_min<math.pi and tmp_max>math.pi):
                        if((phi_value>tmp_max and phi_value<tmp_min+math.pi)or (phi_value>tmp_max-math.pi and phi_value<tmp_min)):
                            continue
                #In case of one ROI (major only)(i.e.,for 'q' and 'phi')
                else: 
                    if (self.phi_max>=self.phi_min):
                        if (phi_value<self.phi_min  or phi_value>self.phi_max):
                            continue
                            
                    else:
                        if (phi_value<self.phi_min and phi_value>self.phi_max):
                            continue
                #print "qmax=",qmax,qmin       

                if q_value<qmin or q_value>qmax:
                    continue
                                                    
                # Check which type of averaging we need
                if run.lower()=='phi': 
                    i_bin = int(math.ceil(self.nbins*(phi_value-self.phi_min)/(self.phi_max-self.phi_min))) - 1
                else:
                    # If we don't need this pixel, skip the rest of the work
                    #TODO: an improvement here would be to compute the average
                    # Q for the pixel from the part that is covered by
                    # the ring defined by q_min/q_max rather than the complete
                    # pixel 
                    i_bin = int(math.ceil(self.nbins*(q_value-qmin)/(qmax-qmin))) - 1
                           
                try:
                    y[i_bin] += frac * data[j][i]
                except:
                    import sys
                    print sys.exc_value
                    print i_bin, frac
                
                if data2D.err_data == None or data2D.err_data[j][i]==0.0:
                    y_err[i_bin] += frac * frac * math.fabs(data2D.data[j][i])
                else:
                    y_err[i_bin] += frac * frac * data2D.err_data[j][i] * data2D.err_data[j][i]
                y_counts[i_bin] += frac
        
        for i in range(self.nbins):
            y[i] = y[i] / y_counts[i]
            y_err[i] = math.sqrt(y_err[i]) / y_counts[i]
            # Check which type of averaging we need
            if run.lower()=='phi':
                #Calculate x[i] and put back the origin of angle back to the right hand side (from the left).
                x[i] = ((self.phi_max-self.phi_min)/self.nbins*(1.0*i + 0.5)+self.phi_min-2*math.pi)*180/math.pi
                if x[i]<0:
                    x[i]=360+x[i]
            else:
                x[i] = (qmax-qmin)/self.nbins*(1.0*i + 0.5)+qmin
            
        return Data1D(x=x, y=y, dy=y_err)
                
class SectorPhi(_Sector):
    """
        Sector average as a function of phi.
        I(phi) is return and the data is averaged over Q.
        
        A sector is defined by r_min, r_max, phi_min, phi_max.
        The number of bin in phi also has to be defined.
    """
    def __call__(self, data2D):
        """
            Perform sector average and return I(phi).
            
            @param data2D: Data2D object
            @return: Data1D object
        """
        return self._agv(data2D, 'phi')

class SectorQold(_Sector):
    """
        Sector average as a function of Q.
        I(Q) is return and the data is averaged over phi.
        
        A sector is defined by r_min, r_max, phi_min, phi_max.
        The number of bin in Q also has to be defined.
    """
    def __call__(self, data2D):
        """
            Perform sector average and return I(Q).
            
            @param data2D: Data2D object
            @return: Data1D object
        """
        return self._agv(data2D, 'q')
    
class SectorQ(_Sector):
    """
        Sector average as a function of Q for both symatric wings.
        I(Q) is return and the data is averaged over phi.
        
        A sector is defined by r_min, r_max, phi_min, phi_max.
        r_min, r_max, phi_min, phi_max >0.  
        The number of bin in Q also has to be defined.
    """
    def __call__(self, data2D):
        """
            Perform sector average and return I(Q).
            
            @param data2D: Data2D object
            @return: Data1D object
        """
        return self._agv(data2D, 'q2')
if __name__ == "__main__": 

    from loader import Loader
    

    d = Loader().load('test/MAR07232_rest.ASC')
    #d = Loader().load('test/MP_New.sans')

    
    r = SectorQ(r_min=.000001, r_max=.01, phi_min=0.0, phi_max=2*math.pi)
    o = r(d)
    
    s = Ring(r_min=.000001, r_max=.01) 
    p = s(d)
    
    for i in range(len(o.x)):
        print o.x[i], o.y[i], o.dy[i]