source: sasmodels/sasmodels/models/triaxial_ellipsoid.c @ ee60aa7

core_shell_microgelsmagnetic_modelticket-1257-vesicle-productticket_1156ticket_1265_superballticket_822_more_unit_tests
Last change on this file since ee60aa7 was ee60aa7, checked in by Paul Kienzle <pkienzle@…>, 6 years ago

clean up effective radius functions; improve mono_gauss_coil accuracy; start moving VR into C

  • Property mode set to 100644
File size: 4.0 KB
Line 
1//#define INVALID(v) (v.radius_equat_minor > v.radius_equat_major || v.radius_equat_major > v.radius_polar)
2
3static double
4form_volume(double radius_equat_minor, double radius_equat_major, double radius_polar)
5{
6    return M_4PI_3*radius_equat_minor*radius_equat_major*radius_polar;
7}
8
9static double
10radius_from_volume(double radius_equat_minor, double radius_equat_major, double radius_polar)
11{
12    return cbrt(radius_equat_minor*radius_equat_major*radius_polar);
13}
14
15static double
16radius_from_min_dimension(double radius_equat_minor, double radius_equat_major, double radius_polar)
17{
18    const double rad_equat_min = (radius_equat_minor < radius_equat_major ? radius_equat_minor : radius_equat_major);
19    return (rad_equat_min < radius_polar ? rad_equat_min : radius_polar);
20}
21
22static double
23radius_from_max_dimension(double radius_equat_minor, double radius_equat_major, double radius_polar)
24{
25    const double rad_equat_max = (radius_equat_minor < radius_equat_major ? radius_equat_major : radius_equat_minor);
26    return (rad_equat_max > radius_polar ? rad_equat_max : radius_polar);
27}
28
29static double
30effective_radius(int mode, double radius_equat_minor, double radius_equat_major, double radius_polar)
31{
32    switch (mode) {
33    case 1: // equivalent sphere
34        return radius_from_volume(radius_equat_minor,radius_equat_major, radius_polar);
35    case 2: // min radius
36        return radius_from_min_dimension(radius_equat_minor,radius_equat_major, radius_polar);
37    case 3: // max radius
38        return radius_from_max_dimension(radius_equat_minor,radius_equat_major, radius_polar);
39    }
40}
41
42static void
43Fq(double q,
44    double *F1,
45    double *F2,
46    double sld,
47    double sld_solvent,
48    double radius_equat_minor,
49    double radius_equat_major,
50    double radius_polar)
51{
52    const double pa = square(radius_equat_minor/radius_equat_major) - 1.0;
53    const double pc = square(radius_polar/radius_equat_major) - 1.0;
54    // translate a point in [-1,1] to a point in [0, pi/2]
55    const double zm = M_PI_4;
56    const double zb = M_PI_4;
57    double outer_sum_F1 = 0.0;
58    double outer_sum_F2 = 0.0;
59    for (int i=0;i<GAUSS_N;i++) {
60        //const double u = GAUSS_Z[i]*(upper-lower)/2 + (upper + lower)/2;
61        const double phi = GAUSS_Z[i]*zm + zb;
62        const double pa_sinsq_phi = pa*square(sin(phi));
63
64        double inner_sum_F1 = 0.0;
65        double inner_sum_F2 = 0.0;
66        const double um = 0.5;
67        const double ub = 0.5;
68        for (int j=0;j<GAUSS_N;j++) {
69            // translate a point in [-1,1] to a point in [0, 1]
70            const double usq = square(GAUSS_Z[j]*um + ub);
71            const double r = radius_equat_major*sqrt(pa_sinsq_phi*(1.0-usq) + 1.0 + pc*usq);
72            const double fq = sas_3j1x_x(q*r);
73            inner_sum_F1 += GAUSS_W[j] * fq;
74            inner_sum_F2 += GAUSS_W[j] * fq * fq;
75        }
76        outer_sum_F1 += GAUSS_W[i] * inner_sum_F1;  // correcting for dx later
77        outer_sum_F2 += GAUSS_W[i] * inner_sum_F2;  // correcting for dx later
78    }
79    // translate integration ranges from [-1,1] to [lower,upper] and normalize by 4 pi
80    outer_sum_F1 *= 0.25;  // = outer*um*zm*8.0/(4.0*M_PI);
81    outer_sum_F2 *= 0.25;  // = outer*um*zm*8.0/(4.0*M_PI);
82
83    const double volume = form_volume(radius_equat_minor, radius_equat_major, radius_polar);
84    const double contrast = (sld - sld_solvent);
85    *F1 = 1.0e-2 * contrast * volume * outer_sum_F1;
86    *F2 = 1.0e-4 * square(contrast * volume) * outer_sum_F2;
87}
88
89
90static double
91Iqabc(double qa, double qb, double qc,
92    double sld,
93    double sld_solvent,
94    double radius_equat_minor,
95    double radius_equat_major,
96    double radius_polar)
97{
98    const double qr = sqrt(square(radius_equat_minor*qa)
99                           + square(radius_equat_major*qb)
100                           + square(radius_polar*qc));
101    const double fq = sas_3j1x_x(qr);
102    const double vol = form_volume(radius_equat_minor, radius_equat_major, radius_polar);
103    const double drho = (sld - sld_solvent);
104
105    return 1.0e-4 * square(vol * drho * fq);
106}
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