source: sasmodels/sasmodels/models/triaxial_ellipsoid.c @ d277229

core_shell_microgelsmagnetic_modelticket-1257-vesicle-productticket_1156ticket_1265_superballticket_822_more_unit_tests
Last change on this file since d277229 was d277229, checked in by grethevj, 6 years ago

Models updated to include choices for effective interaction radii

  • Property mode set to 100644
File size: 3.9 KB
Line 
1//#define INVALID(v) (v.radius_equat_minor > v.radius_equat_major || v.radius_equat_major > v.radius_polar)
2
3static double
4form_volume(double radius_equat_minor, double radius_equat_major, double radius_polar)
5{
6    return M_4PI_3*radius_equat_minor*radius_equat_major*radius_polar;
7}
8
9static double
10radius_from_volume(double radius_equat_minor, double radius_equat_major, double radius_polar)
11{
12    return cbrt(radius_equat_minor*radius_equat_major*radius_polar);
13}
14
15static double
16radius_from_min_dimension(double radius_equat_minor, double radius_equat_major, double radius_polar)
17{
18    const double rad_equat_min = (radius_equat_minor < radius_equat_major ? radius_equat_minor : radius_equat_major);
19    return (rad_equat_min < radius_polar ? rad_equat_min : radius_polar);
20}
21
22static double
23radius_from_max_dimension(double radius_equat_minor, double radius_equat_major, double radius_polar)
24{
25    const double rad_equat_max = (radius_equat_minor < radius_equat_major ? radius_equat_major : radius_equat_minor);
26    return (rad_equat_max > radius_polar ? rad_equat_max : radius_polar);
27}
28
29static double
30effective_radius(int mode, double radius_equat_minor, double radius_equat_major, double radius_polar)
31{
32    if (mode == 1) {
33        return radius_from_volume(radius_equat_minor,radius_equat_major, radius_polar);
34    } else if (mode == 2) {
35        return radius_from_min_dimension(radius_equat_minor,radius_equat_major, radius_polar);
36    } else {
37        return radius_from_max_dimension(radius_equat_minor,radius_equat_major, radius_polar);
38    }
39}
40
41static void
42Fq(double q,
43    double *F1,
44    double *F2,
45    double sld,
46    double sld_solvent,
47    double radius_equat_minor,
48    double radius_equat_major,
49    double radius_polar)
50{
51    const double pa = square(radius_equat_minor/radius_equat_major) - 1.0;
52    const double pc = square(radius_polar/radius_equat_major) - 1.0;
53    // translate a point in [-1,1] to a point in [0, pi/2]
54    const double zm = M_PI_4;
55    const double zb = M_PI_4;
56    double outer_sum_F1 = 0.0;
57    double outer_sum_F2 = 0.0;
58    for (int i=0;i<GAUSS_N;i++) {
59        //const double u = GAUSS_Z[i]*(upper-lower)/2 + (upper + lower)/2;
60        const double phi = GAUSS_Z[i]*zm + zb;
61        const double pa_sinsq_phi = pa*square(sin(phi));
62
63        double inner_sum_F1 = 0.0;
64        double inner_sum_F2 = 0.0;
65        const double um = 0.5;
66        const double ub = 0.5;
67        for (int j=0;j<GAUSS_N;j++) {
68            // translate a point in [-1,1] to a point in [0, 1]
69            const double usq = square(GAUSS_Z[j]*um + ub);
70            const double r = radius_equat_major*sqrt(pa_sinsq_phi*(1.0-usq) + 1.0 + pc*usq);
71            const double fq = sas_3j1x_x(q*r);
72            inner_sum_F1 += GAUSS_W[j] * fq;
73            inner_sum_F2 += GAUSS_W[j] * fq * fq;
74        }
75        outer_sum_F1 += GAUSS_W[i] * inner_sum_F1;  // correcting for dx later
76        outer_sum_F2 += GAUSS_W[i] * inner_sum_F2;  // correcting for dx later
77    }
78    // translate integration ranges from [-1,1] to [lower,upper] and normalize by 4 pi
79    outer_sum_F1 *= 0.25;  // = outer*um*zm*8.0/(4.0*M_PI);
80    outer_sum_F2 *= 0.25;  // = outer*um*zm*8.0/(4.0*M_PI);
81
82    const double volume = form_volume(radius_equat_minor, radius_equat_major, radius_polar);
83    const double contrast = (sld - sld_solvent);
84    *F1 = 1.0e-2 * contrast * volume * outer_sum_F1;
85    *F2 = 1.0e-4 * square(contrast * volume) * outer_sum_F2;
86}
87
88
89static double
90Iqabc(double qa, double qb, double qc,
91    double sld,
92    double sld_solvent,
93    double radius_equat_minor,
94    double radius_equat_major,
95    double radius_polar)
96{
97    const double qr = sqrt(square(radius_equat_minor*qa)
98                           + square(radius_equat_major*qb)
99                           + square(radius_polar*qc));
100    const double fq = sas_3j1x_x(qr);
101    const double vol = form_volume(radius_equat_minor, radius_equat_major, radius_polar);
102    const double drho = (sld - sld_solvent);
103
104    return 1.0e-4 * square(vol * drho * fq);
105}
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