source: sasmodels/sasmodels/models/sphere.py @ c1e44e5

Last change on this file since c1e44e5 was c1e44e5, checked in by Paul Kienzle <pkienzle@…>, 5 years ago

Add local link to source files. Refs #1263.

  • Property mode set to 100644
File size: 2.8 KB
Line 
1r"""
2For information about polarised and magnetic scattering, see
3the :ref:`magnetism` documentation.
4
5Definition
6----------
7
8The 1D scattering intensity is calculated in the following way (Guinier, 1955)
9
10.. math::
11
12    I(q) = \frac{\text{scale}}{V} \cdot \left[
13        3V(\Delta\rho) \cdot \frac{\sin(qr) - qr\cos(qr))}{(qr)^3}
14        \right]^2 + \text{background}
15
16where *scale* is a volume fraction, $V$ is the volume of the scatterer,
17$r$ is the radius of the sphere and *background* is the background level.
18*sld* and *sld_solvent* are the scattering length densities (SLDs) of the
19scatterer and the solvent respectively, whose difference is $\Delta\rho$.
20
21Note that if your data is in absolute scale, the *scale* should represent
22the volume fraction (which is unitless) if you have a good fit. If not,
23it should represent the volume fraction times a factor (by which your data
24might need to be rescaled).
25
26The 2D scattering intensity is the same as above, regardless of the
27orientation of $\vec q$.
28
29Validation
30----------
31
32Validation of our code was done by comparing the output of the 1D model
33to the output of the software provided by the NIST (Kline, 2006).
34
35
36References
37----------
38
39.. [#] A Guinier and G. Fournet, *Small-Angle Scattering of X-Rays*, John Wiley and Sons, New York, (1955)
40
41Authorship and Verification
42----------------------------
43
44* **Author:**
45* **Last Modified by:**
46* **Last Reviewed by:** S King and P Parker **Date:** 2013/09/09 and 2014/01/06
47"""
48
49import numpy as np
50from numpy import inf
51
52name = "sphere"
53title = "Spheres with uniform scattering length density"
54description = """\
55P(q)=(scale/V)*[3V(sld-sld_solvent)*(sin(qr)-qr cos(qr))
56                /(qr)^3]^2 + background
57    r: radius of sphere
58    V: The volume of the scatter
59    sld: the SLD of the sphere
60    sld_solvent: the SLD of the solvent
61"""
62category = "shape:sphere"
63
64#             ["name", "units", default, [lower, upper], "type","description"],
65parameters = [["sld", "1e-6/Ang^2", 1, [-inf, inf], "sld",
66               "Layer scattering length density"],
67              ["sld_solvent", "1e-6/Ang^2", 6, [-inf, inf], "sld",
68               "Solvent scattering length density"],
69              ["radius", "Ang", 50, [0, inf], "volume",
70               "Sphere radius"],
71             ]
72
73source = ["lib/sas_3j1x_x.c", "sphere.c"]
74have_Fq = True
75effective_radius_type = ["radius"]
76
77def random():
78    """Return a random parameter set for the model."""
79    radius = 10**np.random.uniform(1.3, 4)
80    pars = dict(
81        radius=radius,
82    )
83    return pars
84
85tests = [
86    [{}, 0.2, 0.726362],
87    [{"scale": 1., "background": 0., "sld": 6., "sld_solvent": 1.,
88      "radius": 120., "radius_pd": 0.2, "radius_pd_n":45},
89     0.2, 0.228843],
90    [{"radius": 120., "radius_pd": 0.2, "radius_pd_n":45},
91     0.1, None, None, 120., None, 1.0],
92    [{"@S": "hardsphere"}, 0.1, None],
93]
Note: See TracBrowser for help on using the repository browser.